Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20pahari_20[refseq_20GCF_5F900095145.1_202017-04-28] 2,581 sequences; 2,475,012,951 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq4 91.5 1e-13 seq1 82.4 7e-11 >seq4 Length=164141553 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 131911 CAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATC 131970 ||| || | ||| | | | ||||| ||||| ||||||||||| || ||||| ||| Sbjct 18056557 CAACACAAGATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCCGACAAAGTACGGCCATC 18056616 Query 131971 TTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATC 132030 ||| ||||| ||||| | | |||| | | ||| ||||| ||||| || ||||| ||||| Sbjct 18056617 TTCCAGCTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 18056676 Query 132031 GGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGT 132090 || || || | | ||| | ||| || | || || || |||| ||| | || Sbjct 18056677 CTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGT 18056736 Query 132091 TTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||| || || || || || | ||||||||||| Sbjct 18056737 TTTTCCCGTAAGGGTCTTCACAAAAATCTGCAT 18056769 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 131911 CAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATC 131970 ||| || | ||| | | | ||||| ||||| ||||||||||| || ||||| ||| Sbjct 99334570 CAACACAAGATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCCGACAAAGTACGGCCATC 99334629 Query 131971 TTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATC 132030 ||| ||||| ||||| | | |||| | | ||| ||||| ||||| || ||||| ||||| Sbjct 99334630 TTCCAGCTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 99334689 Query 132031 GGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGT 132090 || || || | | ||| | ||| || | || || || |||| ||| | || Sbjct 99334690 CTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGT 99334749 Query 132091 TTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||| || || || || || | ||||||||||| Sbjct 99334750 TTTTCCCGTAAGGGTCTTCACAAAAATCTGCAT 99334782 >seq1 Length=172151128 Score = 82.4 bits (90), Expect = 7e-11 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 147503 TGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGAT 147562 |||||| || ||||| | ||||||||||||||||| ||| |||| || ||||| | Sbjct 73310442 TGTACTCTACTATTTCTGTACACAGGTTGCTGCATTTGATGGTCCCCAGGTTCTGCTGGT 73310383 Query 147563 TGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGG 147602 |||| ||||| || || | |||||| |||||||||| || Sbjct 73310382 TGCTCTTCCGGTTACAGGAATCTTTGTAGAGCATGTATGG 73310343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476595823331160