Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20pahari_20[refseq_20GCF_5F900095145.1_202017-04-28] 2,581 sequences; 2,475,012,951 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq15 170 2e-37 seq2 141 1e-28 seq8 132 6e-26 seq13 93.3 5e-14 >seq15 Length=89017189 Score = 170 bits (188), Expect = 2e-37 Identities = 229/319 (72%), Gaps = 0/319 (0%) Strand=Plus/Minus Query 171072 GTGGTGACCCAGGATGAGAGGGTGCTGCTGAACACGCCAGCCTCCCTGAAATGCTCCCTG 171131 ||||||||||||||||| || | ||| |||| | || ||| | ||| || ||| Sbjct 40022362 GTGGTGACCCAGGATGAAAGAAAGGCACTGCACACAACTGCATCCTTACGATGTTCTCTG 40022303 Query 171132 CAGACTTCTCAGGAGGTGCTGATTGTCACCTGGCAGAAAATCAAGCCCACCATTCCAGAG 171191 | || || ||||| ||||||| || |||||||||| || | | ||||| Sbjct 40022302 AAAACATCCCAGGAACCCTTGATTGTGACATGGCAGAAAAAGAAAGCTGTAAGCCCAGAA 40022243 Query 171192 AACATGATAACTTTTAGCAAAGACCACGGGGTGGTGGTCCAGCCGGCTTATAAGGACAAG 171251 |||||| | || | |||||| ||| ||||| || ||||||| || || || |||| | Sbjct 40022242 AACATGGTCACCTACAGCAAAACCCATGGGGTTGTAATCCAGCCTGCCTACAAAGACAGG 40022183 Query 171252 ATAAACATCACCCAGCTTGGACTCCAAAACTCAACCATCACTTTTTGGAATACCACCTTA 171311 |||||| |||| |||| |||||| ||||| | |||||| || ||||| || || || Sbjct 40022182 ATAAACGTCACTGAGCTGGGACTCTGGAACTCCAGCATCACCTTCTGGAACACAACGTTG 40022123 Query 171312 GAGGACGAGGGGTGCTACAACTGCCTCTTTAACACCTTTGGGTCTGGGAAAATCTCGGGG 171371 || || ||||| ||||||| || ||||| ||||| ||||| ||| |||| |||| || Sbjct 40022122 GAAGATGAGGGTTGCTACATGTGTCTCTTCAACACGTTTGGTTCTCAGAAAGTCTCAGGA 40022063 Query 171372 GTGGCCTGCCTCACCCTCT 171390 || ||||| ||||||| Sbjct 40022062 ACAGCTTGCCTTACCCTCT 40022044 Score = 141 bits (156), Expect = 1e-28 Identities = 183/253 (72%), Gaps = 0/253 (0%) Strand=Plus/Minus Query 171393 GTGCAGCCCACTGTGTTTCTGCATTATAAATTTTTTGATGACCACCTGAACATCACCTGT 171452 || ||||||| || || || || || | |||||| |||||||| |||||||| || Sbjct 40019942 GTACAGCCCATAGTACACCTTCACTACAACTATTTTGAAGACCACCTAAACATCACTTGC 40019883 Query 171453 TCTGCCAATGCCCGCCCGCCACCTCAGATTTTTTGGAAGATTTCGGGGTCAGAAATTGAA 171512 ||||| | ||||||||| | ||| || | |||||| | ||| ||| |||||| Sbjct 40019882 TCTGCGACTGCCCGCCCAGCCCCTGCCATCTCCTGGAAGGGCACTGGGACAGGAATTGAG 40019823 Query 171513 AACAGTAGCGAGGTTCTTTCCCATTCTAATGGAACTACTTCTGTAACCAGTGTACTCCAA 171572 || |||| |||| || | |||||| ||||| ||||| || || ||||| | |||| Sbjct 40019822 AATAGTACCGAGAGTCACTTCCATTCAAATGGGACTACGTCCGTCACCAGCATCCTCCGG 40019763 Query 171573 GTTAAAGACCCCAAGAGTCAGTTGGGAAAGGAGGTTATCTGCCAAGTGTGGCACCTGGGA 171632 || ||||||||||| | ||| | || ||||| || |||||||| || | ||||||| Sbjct 40019762 GTCAAAGACCCCAAAACTCAAGTCGGGAAGGAAGTGATCTGCCAGGTTTTATACCTGGGG 40019703 Query 171633 AATGTAACTAACT 171645 | ||| ||| ||| Sbjct 40019702 ACTGTGACTGACT 40019690 >seq2 Length=163939365 Score = 141 bits (156), Expect = 1e-28 Identities = 128/161 (80%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 146986 AGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGG 147045 ||||| || | || || | ||||||||||||||| | |||||||| ||||||||||| Sbjct 24269900 AGGCCTGTGATATGTGCAATCATGTAGGTGAGCAGAGCATAGCTGGCAATGTTGAAGGGC 24269959 Query 147046 ACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCGGCC 147105 || ||||| ||||| || || ||||||||||| |||||||| || |||||||| | || Sbjct 24269960 ACACCCAGACCCATATCTCCTGACCTCTGGTAAAGCTGGCAAGATAGCTCCCCATTCACC 24270019 Query 147106 ACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCAT 147146 || || |||||||| ||| ||||| || ||||| ||||| Sbjct 24270020 ACATAGAACTGGCAGAGGGCATGGCAAGGAGGCAGTGCCAT 24270060 Score = 82.4 bits (90), Expect = 9e-11 Identities = 110/153 (72%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 147283 GCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGC 147342 || ||||| |||||||| ||||| || || ||||| |||||||| || || || | Sbjct 24274819 GCTCCAAAATGCCTCCATTGGAAACCATAAACTGGGCCCAGGTCCCCTTCCTGTCGGGCA 24274878 Query 147343 GAGAAGCCCGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCCC 147402 || || ||| | | ||||| || ||||||| | ||| |||||||| | ||||||| Sbjct 24274879 GAAAATCCCAAGCTGTCCAGAAAGTCTCGGGACCCATTGGCATCCCAGATTCTCACTCCC 24274938 Query 147403 TTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCC 147435 |||| ||| | || |||| | ||||| ||| Sbjct 24274939 TTGGAGGACAATTCTTTAGCATTTGTGGATCCC 24274971 >seq8 Length=167013402 Score = 132 bits (146), Expect = 6e-26 Identities = 128/167 (77%), Gaps = 12/167 (7%) Strand=Plus/Plus Query 178231 AGGGTTACTTGGGTTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACTTGGAGGAGGTGA 178290 ||||||||||||||||||| ||||| ||||| ||||| ||||||||| ||| || |||| Sbjct 105296524 AGGGTTACTTGGGTTGCCAAGCCTTATCAGAAATGATCCAGTTTTACCTGGTAGAAGTGA 105296583 Query 178291 TGCCTCAGGCCGAGAATCACAGCGGGGGTGGAGGCCCGGACATTAAGGAGCATGTAAACT 178350 |||| || || ||||| || |||||||| || ||||||||| | || | Sbjct 105296584 TGCCCCAAGCAGAGAAGCA------------TGGCCCGGAAATCAAGGAGCATTTGAATT 105296631 Query 178351 CTCTGGGGGAAAAGCTAAAGACCCTTAGAGTGAGGCTGCGGCGATGT 178397 | ||||| || ||||| |||||||| || || |||||||||| ||| Sbjct 105296632 CCCTGGGAGAGAAGCTGAAGACCCTCAGGATGCGGCTGCGGCGCTGT 105296678 >seq13 Length=116904986 Score = 93.3 bits (102), Expect = 5e-14 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 |||||| |||||||| | |||| | || ||||||| | ||||| | || |||||||| Sbjct 116676067 GTACTCCCTGGTGTTCATCATTGGTGTGATAGGCAATGTCTTGGTGGTTCTGGTCCTCAT 116676008 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGC 8720 | | |||||||||| | |||||||| ||||| ||||||||||||||| Sbjct 116676007 ACAACACAAGAGGCTTCAAAACATGACCAGCATCTACCTGTTCAACCTGGC 116675957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583469175218400