Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20pahari_20[refseq_20GCF_5F900095145.1_202017-04-28] 2,581 sequences; 2,475,012,951 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq4 143 2e-29 seq1 122 8e-23 seq15 98.7 9e-16 seq9 98.7 9e-16 seq8 89.7 5e-13 seq28 87.8 2e-12 seq6 87.8 2e-12 >seq4 Length=164141553 Score = 143 bits (158), Expect = 2e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| || | |||||||| | ||| | ||| ||||||||| |||||||| || | | Sbjct 18056543 CCACCCCGAAGTCTCAACACAAGATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCCGAC 18056602 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || | || |||||||||||||| ||||| ||||||| |||||| || | |||| Sbjct 18056603 AAAGTACGGCCATCTTCCAGCTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGGAGGA 18056662 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||||| ||| |||||| ||| | | || | | ||||| | ||| ||| Sbjct 18056663 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACC 18056722 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | |||||| ||||| ||||| | || |||||||| |||||||| Sbjct 18056723 TCGAGCGTGATGGTTTTTCCCGTAAGGGTCTTCACAAAAATCTGCAT 18056769 Score = 143 bits (158), Expect = 2e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| || | |||||||| | ||| | ||| ||||||||| |||||||| || | | Sbjct 99334556 CCACCCCGAAGTCTCAACACAAGATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCCGAC 99334615 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || | || |||||||||||||| ||||| ||||||| |||||| || | |||| Sbjct 99334616 AAAGTACGGCCATCTTCCAGCTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGGAGGA 99334675 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||||| ||| |||||| ||| | | || | | ||||| | ||| ||| Sbjct 99334676 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACC 99334735 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | |||||| ||||| ||||| | || |||||||| |||||||| Sbjct 99334736 TCGAGCGTGATGGTTTTTCCCGTAAGGGTCTTCACAAAAATCTGCAT 99334782 Score = 98.7 bits (108), Expect = 9e-16 Identities = 152/216 (70%), Gaps = 1/216 (0%) Strand=Plus/Plus Query 35522 CTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCG 35581 |||||||| | || | || |||| ||||||||||||| || | ||| || | | Sbjct 31007717 CTCAACACAAGGTGAAGGATAGACTCCGTTTGAATGTTGTAGTCAGACAAAGTACAGCCA 31007776 Query 35582 TCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTG 35641 || |||||||||||||| ||||| ||||||| |||||| || | | ||| | || || Sbjct 31007777 TCTTCCAGCTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGGAAGAAGTCCTTCATTA 31007836 Query 35642 TCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATC 35701 | | |||||| ||| | | || | | ||||| | ||| | ||| | ||||| Sbjct 31007837 TTCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAAACTCGAGTGTGATG 31007896 Query 35702 GTTTTAC-CCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||||| | || | | || ||||||||||||||||| Sbjct 31007897 GTTTTTCTCCATAAGGGTCTTCACAAATATCTGCAT 31007932 >seq1 Length=172151128 Score = 122 bits (134), Expect = 8e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 35522 CTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCG 35581 |||||| | | ||| | ||| |||||||||||||||||| | ||| || || | Sbjct 144045278 CTCAACCCAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAGAAAGACAAAGTACGGCCA 144045337 Query 35582 TCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTG 35641 || |||||||||||||||||||| ||||| | ||||| || | ||||| | ||||| Sbjct 144045338 TCTTCCAGCTGCTTACCCGCAAAGATCAATCTCTGCTCATCAGGAGGAATTCCTTCCTTA 144045397 Query 35642 TCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATC 35701 ||| |||||| ||| | | || | | ||||| | ||| |||| | | |||| Sbjct 144045398 TCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTTGAGCTTGATG 144045457 Query 35702 GTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||||| ||||| || || |||||||| |||||||| Sbjct 144045458 GTTTTTCCCGTAAAGGTCTTCACAAAAATCTGCAT 144045492 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/193 (70%), Gaps = 1/193 (1%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||||||||||||||| || | ||| || || |||| |||||||||||| | ||||| Sbjct 19506323 CTCCTTTTGAATGTTGTAGTCAGACAAAGTGCGGCCGTCTTCCAGCTGCTTA-CAGCAAA 19506265 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 | || || ||||| || | | | | | ||||| ||| || ||| ||| | ||| Sbjct 19506264 GAGCAGCCTCTGCTAATCAGGACGGATTCCTTCCTTATCCTGGACCTTGGCCTTTACAGT 19506205 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| | ||| ||||| | ||||| || || || | | || ||||| Sbjct 19506204 TTCTGTAGTGTCCGAGGGTTCAACCTCGAGTGTGATGGTCTTCCCAATAAGGGTCTTCAC 19506145 Query 35725 AAATATCTGCATT 35737 ||| |||||||| Sbjct 19506144 AAAAGTCTGCATT 19506132 >seq15 Length=89017189 Score = 98.7 bits (108), Expect = 9e-16 Identities = 161/231 (70%), Gaps = 1/231 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||| | | |||||||| | ||| | || ||||||||||||||| || || Sbjct 12733322 CCACCAGGAAGGCTCAACACAAGATGAAGGGTGAACTCCTTTTGAATGTTATAGTCAAAG 12733263 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 ||| | || | || |||||||||||||| ||||| |||| || ||||| || | |||| Sbjct 12733262 AAGTATGGC-CATCTTCCAGCTGCTTACCAGCAAAGATCAGCCTGTGCTGATCAGGAGGA 12733204 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||||| ||| | |||| ||| | | || ||| ||||| | ||| || Sbjct 12733203 ATTCCTTCCTTATCCTGGGTCTTGGCCTTTACATTTTACACAGTGTCCAGGGGTTCAGCC 12733144 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTCTG 35740 | | |||||| || || ||| | | | |||||||| ||||||||| || Sbjct 12733143 TTGAGCGTGATGGTCTTCCCCATTAGGATCTTCACAAAAATCTGCATTGTG 12733093 >seq9 Length=107150856 Score = 98.7 bits (108), Expect = 9e-16 Identities = 161/232 (69%), Gaps = 5/232 (2%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||| | | |||||||| | ||| | ||| |||||||||| |||||| || | | Sbjct 72218606 CCACCAGGAAGTCTCAACACAAGATGAAGGGTAGACTCCTTTTGAGGGTTGTAGTCAGAC 72218665 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || | | || ||||||||||| || ||||| ||||||| |||||| || | |||| Sbjct 72218666 AAAGTACAGCCATCTTCCAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGATCAGGAGGA 72218725 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||||| ||| |||||| ||| | | || | | ||||| | || ||| Sbjct 72218726 AGTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCTGAGGGCTCAACC 72218785 Query 35690 TCCACCGTGATCGTTTT-----ACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 | | | |||| ||||| |||| | | | |||||||| |||||||| Sbjct 72218786 TTGAGCATGATGGTTTTCCCCAACCCCTAAGGGACTTCACAAAAATCTGCAT 72218837 Score = 98.7 bits (108), Expect = 9e-16 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGT---AACGTACTCTCCTTTTGAATGTTGTAATCG 35566 |||||||| | |||||||| | || | ||| |||||||||||||||||| || Sbjct 86261792 CCACCACGAAGTCTCAACACAAGGTGAGGAAGGGTAGACTCCTTTTGAATGTTGTAGTCA 86261851 Query 35567 GCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAA 35626 | ||| || || || |||||||||||||| ||||| ||||||| |||||| || | | Sbjct 86261852 GACAAAGTACGGCGATCTTCCAGCTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGGA 86261911 Query 35627 GGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCC 35686 ||| | ||||| ||| | |||| ||| | | | | | ||||| | ||| Sbjct 86261912 -GAAGTCCTTCCTTATCCTAGGTCTTGGACTTTACATTATCTATAGTGTCCGAGGGTTCA 86261970 Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| | |||||| | || || || | || |||||||| |||||||| Sbjct 86261971 TCCTCGAGCGTGATGGCCTTCCCTGTAAGGGTCTTCACAAAAATCTGCAT 86262020 >seq8 Length=167013402 Score = 89.7 bits (98), Expect = 5e-13 Identities = 157/226 (69%), Gaps = 12/226 (5%) Strand=Plus/Minus Query 35511 CACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCA 35570 ||||||| | |||||||| | ||| | ||| ||||||||||||| |||| || | || Sbjct 14199146 CACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATGGTGTAGTCAGACA 14199087 Query 35571 AGGTTC-GCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || | ||| || |||||||| ||||| ||||| ||||||| || ||| || | |||| Sbjct 14199086 AAGTACAGCT-ATCTTCCAGCTGTTTACCAGCAAAGATCAACCTCT-CTGATCAGGAGGA 14199029 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | ||||| | |||| ||| | | || | ||||| | ||| ||| Sbjct 14199028 A---------TGTCCTGGGTCTTGGCCTTTACATTTTCTTTAGTGTCTGAGGGTTCAACC 14198978 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCA 35735 || | |||||| || || | || | || |||||||| ||||||| Sbjct 14198977 TCTAGCGTGATGGTCTTCCTGGTAAGGGTCTTCACAAAGATCTGCA 14198932 Score = 86.0 bits (94), Expect = 6e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 |||| |||||||||||| || | ||| | | |||| |||||||||||||| ||||| Sbjct 32070993 TCCTATTGAATGTTGTAGTCAGACAAATTACAGCCGTCTTCCAGCTGCTTACCAGCAAAA 32070934 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTT 35652 ||| || | ||||||| | ||||| |||||||| ||| |||||| Sbjct 32070933 TTCAGCCTCAGCTGGTCAGGAGGAATTCTCTCCTTATCCTGGATCTT 32070887 >seq28 Length=148379591 Score = 87.8 bits (96), Expect = 2e-12 Identities = 137/195 (70%), Gaps = 1/195 (1%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || || || ||||||||||| | | ||| | | || ||||| ||||| || ||||| Sbjct 9098657 TCTTTCTGGATGTTGTAATCAGAGAGGGTGCTGCCATCTTCCAGATGCTTGCCTGCAAA- 9098715 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 || | || || ||| || | |||| | ||| || ||| |||||| ||||| || Sbjct 9098716 ATGAGCCTCTACTGATCAGGGGGAATGTACTCTTTATCCTGGATCTTGGCCTTCACGGTC 9098775 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||| || | |||||||||| ||||| || || || |||| || |||||| Sbjct 9098776 TCGATAGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACA 9098835 Query 35726 AATATCTGCATTCTG 35740 || || |||||| || Sbjct 9098836 AAGATGTGCATTTTG 9098850 >seq6 Length=146485248 Score = 87.8 bits (96), Expect = 2e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 35522 CTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCG 35581 |||||||| | ||| | | |||||||||||||||||| || | ||| | | | Sbjct 104811128 CTCAACACAAGATGAAGGATGGACTCCTTTTGAATGTTGTAGTCAGACAAAATACAGCCA 104811069 Query 35582 TCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTG 35641 || || |||||||| || ||||| ||||||| |||||| || | ||||| || ||||| Sbjct 104811068 TCTTCTAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGATCAGGAGGAATTCTTTCCTTA 104811009 Query 35642 TCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATC 35701 ||| |||||| ||| | | || | | ||||| | ||| ||| | | ||||| Sbjct 104811008 TCCTGGATCTTGACCTTTACATTTTCTATAGTGTCCAAGGGTTCAACCCCAAGTGTGATG 104810949 Query 35702 GTTTTACCCGTCAAAGTTTTCACAAA 35727 || || ||| | | | |||||||| Sbjct 104810948 GTCTTCCCCATAATTCTCTTCACAAA 104810923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450779056271480