Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20pahari_20[refseq_20GCF_5F900095145.1_202017-04-28] 2,581 sequences; 2,475,012,951 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1997 269 4e-67 seq9 228 1e-54 seq10 129 8e-25 seq1 123 3e-23 seq21 111 2e-19 >seq1997 Length=85722 Score = 269 bits (298), Expect = 4e-67 Identities = 604/895 (67%), Gaps = 23/895 (3%) Strand=Plus/Plus Query 39310 TGACATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCC 39369 |||||| ||||||| | | | ||||| || | ||||| || || || || || || Sbjct 33351 TGACATGGCTCCCATCCTCTTACACTCACCTACTCACTTCTCAAAGAAGTTTGTCTTTCC 33410 Query 39370 TTCCAATGATATATTTTCCATGAAATCAAACGGATTAGTTGCATTAT--AtttttttttA 39427 ||| | ||| | ||||||| ||| ||||| ||||| || || | | | | || ||| Sbjct 33411 TTCTAGTGAAACATTTTCCTTGACGTCAAATGGATTT-TTCCACTCTGAAAATCTTGTTA 33469 Query 39428 AATCCTAATTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCA 39487 | || | || ||| || || | | |||||| ||||| ||||||| Sbjct 33470 AGACCCAGCTCCAGTGTCAGCCTGTCAGTCAAAAATTCAATGTACTGCTTCATCAAAGTG 33529 Query 39488 CAATTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCT 39547 |||||| | || | ||| || || || | |||| ||| || ||||||| || || Sbjct 33530 CAATTCGTCCCGAAGAGCTTCACAGGCAAGGCCTTCGTGAGGAACTCTTGCTCTATCCTA 33589 Query 39548 ACGGCCTCTGTTATTATCGATGTTACTACCTCATC-ACTCGGTGGATGCAATAAATGTTT 39606 || | | || |||| | ||||| | || | | | | | || | || || Sbjct 33590 ACCGTGTTGGTGTTTATTTCTTTTACTCTTTGCTCCAATGGCTTG-TGTACCTGGTGCTT 33648 Query 39607 AAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTA-CTAATTAATTCGTTAG 39665 ||||| || ||| ||||| || |||| ||||| ||||| ||||| | || || | Sbjct 33649 GAACATCGGGCGGGCAAAGTCCCAGTGTAAACCCTCGTCTCTTGCTAATAAGCTCATTGG 33708 Query 39666 AAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAAT-ATGGCAGCAAAAGAT 39724 ||||||| || || ||||| |||| || || |||||||| | | || | |||||||| Sbjct 33709 AAAATGTAAGGCCTGGCATCAGACTGCGATTCTTGAGCCAGAGTTATCGATGCAAAAGAA 33768 Query 39725 CCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTA 39784 |||||||||||||| | ||| || ||||| | |||| || ||||| || ||| Sbjct 33769 CCAGAAAAGAAGATTCTTTCCACCATGGCAAAGACCACAACTCATTCTCC--AA--TGTC 33824 Query 39785 TC--ATTAT----GT-----ATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAG 39833 | ||| | || ||||| | ||||| ||||| |||||||| ||||||| Sbjct 33825 CCCAATTCTCCTTGTCCCCAATCCAACACAAGGCCCAGTCAGCCTTCTTCTTCACACAAG 33884 Query 39834 GCATTGTTTCTATAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTAT 39893 ||||||||| |||||||| |||||||| | | |||| | |||||||| || || | Sbjct 33885 GCATTGTTTAAATAGCATTGAAGAGATATTCTCTTTCCTTGGGATCTTTAATGTAAGTGT 33944 Query 39894 CTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAA 39953 | || | ||||| |||||||| || | | ||| || || || || || || || || | Sbjct 33945 CCATAAGGAGACTGTACATTTCAGAGTATACGTTCTCCATGGCAATTTGGAAGCCATAGA 34004 Query 39954 AACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCA 40013 |||| | || || |||| ||| || ||| | ||||| ||| |||| |||||||| | Sbjct 34005 AACAGCGGGCCTCTGTAACTTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTGA 34064 Query 40014 CTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGG 40073 |||| ||| |||| |||||||| |||| || || |||| || | | ||||||| Sbjct 34065 CTATGCCACCACTCATTGCAAAAAA-GCCAGAACGTGAGATATAAGATGTCTCTCATCGG 34123 Query 40074 GTGTCAATTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAA 40133 || || | ||||||| | ||| | || || || || || || || || ||||||| Sbjct 34124 GTTTCTGATCTTTCCAGTGTTGAATAGCCTTGGAAATGTCCACCTCCTCGGCAGTCCAAA 34183 Query 40134 ACGACGCCTCTGCCTTTTTGTACATGTTCCATATATCACGATATTGTATTGGAAA 40188 | || | ||| || || |||||||| | || |||||| | |||| || ||||| Sbjct 34184 AGGAGGTCTCAGCTTTCTTGTACATTTGCCTGATATCATGGTATTCAATGGGAAA 34238 >seq9 Length=107150856 Score = 228 bits (252), Expect = 1e-54 Identities = 624/949 (66%), Gaps = 29/949 (3%) Strand=Plus/Plus Query 39271 TTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCT----TGTGACATAACTCCCATTT 39326 ||| |||||| |||| || | ||| ||| |||| | | ||| | |||| ||| Sbjct 26404177 TTAGAAGTCAGCATCCAAGGTGAAAGAATTCTCTTATCAAATTCGACCTGACTCTCATCC 26404236 Query 39327 TTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTT 39386 | || || || || | || ||||| || || || || || |||| | ||| ||||||| Sbjct 26404237 TCTGCTACTCGCCTCCTCGCTTCTCAAAGAAGTTTGTCTTTCCTTGTAGTGAAATATTTT 26404296 Query 39387 CCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAATCA 39446 ||||||| ||||| ||||| | | | | | || ||||| || | || || | Sbjct 26404297 CCATGAAGTCAAATGGATTTTCTACTCTGAAAATCTTATTAAAACCCAGCTCCAGCATAA 26404356 Query 39447 ATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGTT 39506 || || || |||||||| | ||| ||||||| ||||||| | ||||||| Sbjct 26404357 GCCTGTCGGCCACAAATTCAAAGTACTGCTTCATCAAAGTGTAATTCATCCAGATGAGTT 26404416 Query 39507 TAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTATCG 39566 | || || | |||| | || ||| | | || || || | | | ||||| Sbjct 26404417 TCACAGGCAAGGCCTTGATGAGGAACGCCTGCTCTATCCTAACCACGTTGGCGATTATTT 26404476 Query 39567 ATGTTACTACCT-CATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAGGCGAAG 39625 | || || || | | | | | | || | | || || || || | |||| | ||| Sbjct 26404477 CTTTTCCTCTCTGCTTTGATGGCTTG-TGTACCAGGTGCTTGAAAATCAGGCAGACAAAG 26404535 Query 39626 TCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGC--A 39683 || || | || ||||| ||||| ||||| | || || | |||||| || || ||| | Sbjct 26404536 TCCCAGTATAAACCCTCGTCTCTGCTAATAAGCTCATTGGGAAATGTAAGGCCTGGCTCA 26404595 Query 39684 TTAGA----------CCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAG 39733 || || || || || |||||||| ||| | ||||| | |||||||| Sbjct 26404596 TTGGAAAATGTAAGTCCCCGTTTCTTGAGCCAGAATGTCAGTGCAAATGGACCAGAAAAA 26404655 Query 39734 AAGA--TGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTAT 39791 || | | ||||||| | ||||| || |||| ||| | ||| | || || | Sbjct 26404656 AAAAAATTGCTTCTACCTCGGCAAAGGCCACAACTCTTTGTCCCCAG--TGCATTGTCCC 26404713 Query 39792 GTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCAT 39851 |||| | ||||||||||| ||||| || ||||||||||||||| ||||||| Sbjct 26404714 CACTCCAAGGCAAGGCCCAATCAGCATTCTTTTT---ACAAGGCATTGTTTCAATAGCAT 26404770 Query 39852 TAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACA 39911 | |||||||| | | |||| | ||||||| || || || || | ||||| || | Sbjct 26404771 TGAAGAGATACTCTCTTTCTTTGGGGTCTTTAATGTAAGTGTCAATAAGGAGACTGTATA 26404830 Query 39912 TTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAA 39971 |||| || || |||||||| || || || || || || || ||||| | | || |||| Sbjct 26404831 TTTCAGAGTGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGTCTCTGTAA 26404890 Query 39972 TTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGG 40031 ||| || ||| | |||| | |||| |||||| | ||||| ||||||| | | Sbjct 26404891 CTTGAACTTCTTGGCTGAATC---GCTCCAAGTTTTCACTGACTATGCCATCACACACTG 26404947 Query 40032 CAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGT 40091 |||| || |||| || || |||||||| | | |||| |||| |||| | ||||| Sbjct 26404948 CAAAGAAAGCCAGAACGTGAGCAATAAAATGTCTCTCATGGGGT-TCAAAGCTTCCCAGT 26405006 Query 40092 CATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTT 40151 | ||||| || || | || || | ||||| |||||||| || ||||| || || | Sbjct 26405007 GCTGAATATCCTTGGAAAGGTCCACCTTCTCAGCAGTCCAAAAGGAGGCCTCAGCTTTCT 26405066 Query 40152 TGTACATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAATCT 40200 ||||||| | ||| |||||| | || | || ||||| | | |||| || Sbjct 26405067 TGTACATCTGCCAGATATCATGGTACTCAATGGGAAAGACAGCAAAGCT 26405115 >seq10 Length=113323912 Score = 129 bits (142), Expect = 8e-25 Identities = 110/136 (81%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||||||||| ||||| | || || |||||||| || || ||||| || || || || | Sbjct 23466445 CCTCATCTCTGCTAATAAGCTCATTGGAAAATGTAAGGCCCGGCATCAGTCCCCGTTTCT 23466386 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 ||||||| ||||| | |||||||| |||||||||||||| |||||||| || ||||| | Sbjct 23466385 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTACGGCGGCAAAGG 23466326 Query 39759 CAACAAGTCTCTCTCC 39774 | |||| || |||||| Sbjct 23466325 CCACAACTCGCTCTCC 23466310 >seq1 Length=172151128 Score = 123 bits (136), Expect = 3e-23 Identities = 107/133 (80%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778 ||||||||||| || || ||||| |||||||| || ||||||||||| || || | || Sbjct 73314772 TGAAATTCCCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGCTCAATGGAC 73314713 Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838 |||||||| |||||||| ||||| ||||| ||||| ||||| || || | | |||||| Sbjct 73314712 TCATTATTCCCCAGAATCTGAGCCGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAACTG 73314653 Query 68839 TTTCTAAGACCAT 68851 ||||| | ||||| Sbjct 73314652 TTTCTTATACCAT 73314640 Score = 104 bits (114), Expect = 3e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 68947 GATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAAT 69006 ||||| | ||||||||| || || || || | ||||||||||| || || |||| Sbjct 73311703 GATCCCTCATATGTTTCGTAGGGGCCACACTCCTTGGCTAGTTCACAGCTGGCTTCTAGG 73311644 Query 69007 GCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCG 69066 || || |||||||| ||||| || |||| |||||| | || |||||| | || || Sbjct 73311643 GCTCCATAATAAATGGTTTCAAAGATCTGCTTATTTAATAACTGGGCTTCTGGGCTCTCA 73311584 Query 69067 AATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGT 69126 || ||||| | || || || |||||||| || || || |||||||| || || || Sbjct 73311583 AAGGGATATCTCATGAGGATGAAAGCATCTGCTAAACCTTGTACCCCAATTCCAATGGGC 73311524 Query 69127 CTATGTCTCTTATTTGA 69143 | ||| | |||||||| Sbjct 73311523 CGATGGCGTTTATTTGA 73311507 Score = 98.7 bits (108), Expect = 1e-15 Identities = 101/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 68441 TCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATAT 68500 |||| |||||||| |||||||| || |||||| || | || || || |||||||| | Sbjct 73318266 TCCAACCGTAGAAGTGCATACTAGTGAGTTTGCCGTAGTTGGGCTCAGCAATATGAATGT 73318207 Query 68501 TCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCT 68560 | | || || ||||||||||||||||| ||||| || || ||||| || | || | ||| Sbjct 73318206 TTAAAGACTGGCTTTGATCGATGAAAGCACCTCTCTCGGCTGCCATCTTGAGAACAGTCT 73318147 Query 68561 TTTGAGGAATTT 68572 | |||| |||| Sbjct 73318146 TCTGAGAGATTT 73318135 Score = 96.9 bits (106), Expect = 5e-15 Identities = 122/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 70334 CACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAA 70393 |||| || | ||| |||||||| ||||| | || || | |||||| || ||||| |||| Sbjct 73299686 CACTGAACACTTTCTTTGTTTCTTTGTGCAGGTTAGAGACGGCTATCCTTGCTGCCAGAA 73299627 Query 70394 TAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTATCTA 70453 | ||||||||||| || | || || | || || ||| | || ||||| | || || | Sbjct 73299626 TGGCATAGTCAGGGTGCTTCGTGGTCAAGGTCGCGGCTGTCTCAGCAGCCAGGGTGTCCA 73299567 Query 70454 ATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 70501 ||| | || || || || |||| || ||||| || |||||||||| Sbjct 73299566 GTTCCACTGTGGTGACCCCACTATACAGGCCTTGGATTACTTTCATGG 73299519 Score = 86.0 bits (94), Expect = 9e-12 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 68482 GGATCGGCTATATGAATATTCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCC 68541 || || || |||||||| || | || || ||||||||||||||||| ||||| || || Sbjct 73318121 GGCTCAGCAATATGAATGTTTAAAGACTGGCTTTGATCGATGAAAGCACCTCTCTCGGCT 73318062 Query 68542 GCCATTTTTATAATACTCTTTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATA 68601 ||||| || | || | |||| |||| |||||||| | |||||| | | || || | Sbjct 73318061 GCCATCTTGAGAACAGTCTTCTGAGAGATTTCCCACACGGTCTTATAGAGTTGCTTCAGG 73318002 Query 68602 TCATCTGGAA 68611 ||||| |||| Sbjct 73318001 TCATCAGGAA 73317992 >seq21 Length=68186955 Score = 111 bits (122), Expect = 2e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 39641 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTG 39700 ||||| || || || | ||| || ||||| || ||||||||||| || || | ||| || Sbjct 4933595 TCATCCCTGCTGATCAGTTCATTTGAAAAAGTCAGTCCAGGCATGAGGCCTCTCTTCTTT 4933654 Query 39701 AGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCA 39760 ||||| ||||| |||||||| |||||||| ||||| || |||||||| || ||||| || Sbjct 4933655 AGCCAGAATATCGCAGCAAATGATCCAGAGAAGAAAATTCCTTCTACAGCAGCAAAGGCT 4933714 Query 39761 ACAAGTCTCTCTCC 39774 || | ||| || || Sbjct 4933715 ACCACTCTTTCCCC 4933728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686886638604840