Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20pahari_20[refseq_20GCF_5F900095145.1_202017-04-28] 2,581 sequences; 2,475,012,951 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq1997 210 2e-49 seq9 178 1e-39 seq21 102 6e-17 seq10 98.7 8e-16 seq2 96.9 3e-15 >seq1997 Length=85722 Score = 210 bits (232), Expect = 2e-49 Identities = 404/586 (69%), Gaps = 20/586 (3%) Strand=Plus/Minus Query 43706 GTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTT 43765 || ||||| ||| |||| ||||| || ||||||||||||| ||||| || | || ||| Sbjct 34241 GTCTTTCCCATTGAATACCATGATATCAGGCAAATGTACAAGAAAGCTGAGACCTCCTTT 34182 Query 43766 TGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGATTGCATTA-AAACC 43824 ||||| || || || || || | | || | | ||| |||| | || | ||||| Sbjct 34181 TGGACTGCCGAGGAGGTGGACATTTCCAAGGCTATTCAACACTGGAAAG-ATCAGAAACC 34123 Query 43825 ACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGT 43884 | || | |||| |||||||| ||| |||| |||||||| ||| | || ||||| Sbjct 34122 CGATGAGAGACATCTTATATCTCACGTTCTGGC-TTTTTTGCAATGAGTGGTGGCATAGT 34064 Query 43885 CAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTT 43944 ||||||||| ||||| || ||| |||||||||||| | |||| || || ||||| Sbjct 34063 CAATGAAAACTTGGTGGAGCGATTTAGCCAAGAAGTTCAAGTTACAGAGGCCCGCTGTTT 34004 Query 43945 TTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGA 44004 ||||| || ||||||||||| || || | | || |||||||||||||| || || || Sbjct 34003 CTATGGCTTCCAAATTGCCATGGAGAACGTATACTCTGAAATGTACAGTCTCCTTATGGA 33944 Query 44005 TACGTACATCAAAGAT----GGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAG 44060 || ||||| |||||| || | ||||| ||| | || ||||| || ||||| Sbjct 33943 CACTTACATTAAAGATCCCAAGGAAAGAGAA-TATC---TCTTCAATGCTATTTAAACAA 33888 Query 44061 TACCTGCGATTAAACATAAAGCAGACTGGGCC----CTTAAAT---GGATAAATTCAAAT 44113 | ||| | || | || || ||||||||| || || ||| || || | Sbjct 33887 TGCCTTGTGTGAAGAAGAAGGCTGACTGGGCCTTGTGTTGGATTGGGGACAAGGAGAATT 33828 Query 44114 GATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGA 44173 | |||||||| || |||| | ||||| | |||||| | || |||||||| || Sbjct 33827 GGGGACATTGGAGAATGAGTTGTGGTCTTTGCCATGGTGGAAAGAATCTTCTTTTCTGGT 33768 Query 44174 TCGTTTGCGGCCAT-ATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTC 44232 || ||||| | || | | ||| | ||||| || || ||||||| || | || ||||| Sbjct 33767 TCTTTTGCATCGATAACTCTGGCTCAAGAATCGCAGTCTGATGCCAGGCCTTACATTTTC 33708 Query 44233 AAATGAG-TTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGC 44277 |||||| ||| || | || || || ||||| || || ||||| Sbjct 33707 CAATGAGCTTATTAGCAAGAGACGAGGGTTTACACTGGGACTTTGC 33662 >seq9 Length=107150856 Score = 178 bits (196), Expect = 1e-39 Identities = 590/908 (65%), Gaps = 36/908 (4%) Strand=Plus/Minus Query 43697 AGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAG 43756 || |||| || ||||| ||| | || ||||| || ||||| |||||||| ||||| || Sbjct 26405115 AGCTTTGCTGTCTTTCCCATTGAGTACCATGATATCTGGCAGATGTACAAGAAAGCTGAG 26405056 Query 43757 GCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTT--AGCACATTGGATTG 43814 || || |||||||| || || | || || | | || || | ||||| ||| | Sbjct 26405055 GCCTCCTTTTGGACTGCTGAGAAGGTGGACCTTTCCAAGGATATTCAGCAC--TGGGAAG 26404998 Query 43815 CATTAAAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCG 43874 | || || || || || | ||||||||| || ||| |||| || ||||| | | | | Sbjct 26404997 CTTTGAACCC-CATGAGAGACATTTTATTGCTCACGTTCTGGCTTTCTTTGCAGTGTGTG 26404939 Query 43875 ACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAG 43934 | || ||||||| |||||| |||| || || || |||||||||||| | |||| Sbjct 26404938 ATGGCATAGTCAGTGAAAACTTGG--AG-CGATTCAGCCAAGAAGTTCAAGTTACAGAGA 26404882 Query 43935 CACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTC 43994 | || ||||| ||||| || ||||||||||| ||||| || || || ||||| ||||||| Sbjct 26404881 CCCGCTGTTTCTATGGCTTCCAAATTGCCATGGAAAACATACACTCTGAAATATACAGTC 26404822 Query 43995 TTCTGATAGATACGTACATCAAAGATGGGCACGAGA---AGCATCGATTGTTTAATGCGA 44051 | || || || || ||||| ||||| | || | || ||| | || ||||| | Sbjct 26404821 TCCTTATTGACACTTACATTAAAGACCCCAAAGAAAGAGAGTATC---TCTTCAATGCTA 26404765 Query 44052 TAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAA 44111 | |||||| | ||| |||| | || || || |||||| | |||| | Sbjct 26404764 TTGAAACAATGCCT---TGTAAAAAGAATGCTGATTGGGCCTTGCCTTGGAGTGGGGACA 26404708 Query 44112 ATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCA--TTTTCTTTTC 44169 ||| | ||| || || |||| || ||||| | || |||| | |||| ||||| Sbjct 26404707 ATG--CACTGGGGACAAAGAGTTGTGGCCTTTGCCGAGGTAGAAGCAATTTTTTTTTTTC 26404650 Query 44170 AGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGG--TTTGAT----------GCC 44217 || | ||||| | ||| ||| | |||||||| || || || ||| Sbjct 26404649 TGGTCCATTTGCACTGACATTCTGGCTCAAGAAACGGGGACTTACATTTTCCAATGAGCC 26404590 Query 44218 TGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGC 44277 || | || ||| | |||||| | || || | || || || ||| | || || |||| Sbjct 26404589 AGGCCTTACATTTCCCAATGAGCTTATTAGCAGAGACGAGGGTTTATACTGGGACTTTGT 26404530 Query 44278 TTGCTTGTTACTTGGATATCTAGGAGACGATAAGCCTTCATGTAAGACAATTACAGATAT 44337 ||| || | | | || | | || ||||| ||| ||| | | ||| || Sbjct 26404529 CTGCCTGATTTTCAAGCACCTGGTACAC---AAGCCATCAAAGCAGAGAGGAAAAGAAAT 26404473 Query 44338 TGTTGTAGAGGCAGTAAAGATAGAACAAGAATTTATGACAACAGCATTACCTGTAAATTT 44397 | | | | || | |||||| || | || | | | || || ||||| || | Sbjct 26404472 AATCGCCAACGTGGTTAGGATAGAGCAGGCGTTCCTCATCAAGGCCTTGCCTGTGAAACT 26404413 Query 44398 AATAGGAATGAATGAACTTTTGATGAACCAATATATTGAATACATTGCAGATCGTTTACT 44457 || | |||||| | ||||||||| || || |||||| | || || | | | Sbjct 26404412 CATCTGGATGAATTACACTTTGATGAAGCAGTACTTTGAATTTGTGGCCGACAGGCTTAT 26404353 Query 44458 TTTGGAACTGGGTTGCGATAAACACTATATTGTACAAAACCCGTTTGATTTTATGGAAAA 44517 |||| ||||||| |||| | | ||| |||| || ||||| || |||||||| Sbjct 26404352 GCTGGAGCTGGGTTTTAATAAGATTTTCAGAGTAGAAAATCCATTTGACTTCATGGAAAA 26404293 Query 44518 TATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAACGCGTTGGAGAATATCAGCGAAT 44577 |||||| | |||| || |||||||| ||||| || || | || || || ||| | || Sbjct 26404292 TATTTCACTACAAGGAAAGACAAACTTCTTTGAGAAGCGAGGAGGCGAGTAGCAGAGGAT 26404233 Query 44578 GGGCGTCA 44585 | | |||| Sbjct 26404232 GAGAGTCA 26404225 >seq21 Length=68186955 Score = 102 bits (112), Expect = 6e-17 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182 || ||| || | || || ||||| | ||| ||||| |||||||| || ||||| ||||| Sbjct 4933728 GGGGAAAGAGTGGTAGCCTTTGCTGCTGTAGAAGGAATTTTCTTCTCTGGATCATTTGCT 4933669 Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242 || ||||| ||| ||||||| |||| | |||||||| |||| ||||||||||| | Sbjct 4933668 GCGATATTCTGGCTAAAGAAGAGAGGCCTCATGCCTGGACTGACTTTTTCAAATGAACTG 4933609 Query 44243 ATAAGTCGTGATGAAG 44258 || || | ||||||| Sbjct 4933608 ATCAGCAGGGATGAAG 4933593 Score = 89.7 bits (98), Expect = 4e-13 Identities = 104/140 (74%), Gaps = 3/140 (2%) Strand=Plus/Minus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 |||| || |||||||||||||| || ||||| || ||||| |||||||| || ||||| | Sbjct 4922337 AAAATCCCTTTGATTTTATGGAGAACATTTCCTTAGAAGGGAAAACAAATTTCTTTGAGA 4922278 Query 44553 AACGCGTTGGAGAATATCAGCGAATGGGCGTCATG---ATAACAAGTGACAATAAATTTA 44609 |||| ||| || ||||||||| | | |||||| ||| | || ||| || | Sbjct 4922277 AACGAGTTTCTGAGTATCAGCGATTTGCAGTCATGGCCGAAACCACAGATAATGTCTTCA 4922218 Query 44610 CTACGGATGAAGATTTCTAA 44629 | ||||| |||||||||| Sbjct 4922217 CCTTGGATGCAGATTTCTAA 4922198 >seq10 Length=113323912 Score = 98.7 bits (108), Expect = 8e-16 Identities = 86/107 (80%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972 |||||||||||| | |||| || || ||||| ||||| || ||||||||||| ||||| Sbjct 23465226 CAAGAAGTTCAAGTTACAGAGGCCCGCTGTTTCTATGGCTTCCAAATTGCCATGGAAAAC 23465285 Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGA 44019 || || || |||||||| ||||| || || || || ||||| ||||| Sbjct 23465286 ATACACTCTGAAATGTATAGTCTCCTTATTGACACTTACATTAAAGA 23465332 >seq2 Length=163939365 Score = 96.9 bits (106), Expect = 3e-15 Identities = 112/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 41047 TGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGT 41106 |||||||| |||| ||||| ||| | || ||||| || || ||||| || || | Sbjct 24270062 TGATGGCACTGCCTCCTTGCCATGCCCTCTGCCAGTTCTATGTGGTGAATGGGGAGCTAT 24270003 Query 41107 CATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGA 41166 | || || | || || || ||||| || ||||| || || || || || ||||| || | Sbjct 24270002 CTTGCCAGCTTTACCAGAGGTCAGGAGATATGGGTCTGGGTGTGCCCTTCAACATTGCCA 24269943 Query 41167 GTTATGCTCTGCTCACGTATATGATTGCACA 41197 | |||||||||||||| || ||||||||||| Sbjct 24269942 GCTATGCTCTGCTCACCTACATGATTGCACA 24269912 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397443497648905