Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20pahari_20[refseq_20GCF_5F900095145.1_202017-04-28] 2,581 sequences; 2,475,012,951 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq9 93.3 4e-14 seq28 86.0 5e-12 seq13 84.2 2e-11 >seq9 Length=107150856 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| ||||||| |||| |||| || || || || ||||| || || |||||||| Sbjct 83841054 TGCCACCGCGCAGACGCAGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCCG 83841113 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | | || | | || || |||||||| |||||| | || || | ||| || || || | Sbjct 83841114 AGAGGGTGTGGCCATCCTCCAGCTGTTTGCCGGCGAATATCAGCCTCTGCTGGTCAGGTG 83841173 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | || || || || ||||||| || | | || | ||||| ||| || | Sbjct 83841174 GGATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGA 83841233 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || ||||| || | ||||||||||| || ||||| ||||| ||||| Sbjct 83841234 CCTCAAGAGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 83841282 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| ||||||| |||| |||| || || || || ||||| || || |||||||| Sbjct 80898442 TGCCACCGCGCAGACGCAGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCCG 80898501 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | | || | | || || | |||||| ||||| | || || | ||| || || || | Sbjct 80898502 AGAGGGTGTGGCCATCCTCCACCTGTTTGCCGGCAAATATCAGCCTCTGCTGGTCAGGTG 80898561 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | || || || || ||||||| || | | || | ||||| ||| || | Sbjct 80898562 GGATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGA 80898621 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || ||||| || | ||||||||||| || ||||| ||||| ||||| Sbjct 80898622 CCTCAAGAGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 80898670 >seq28 Length=148379591 Score = 86.0 bits (94), Expect = 5e-12 Identities = 138/197 (70%), Gaps = 1/197 (1%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || |||||||| || || ||||| || | | ||| | ||||| || || || || Sbjct 9098651 GTTGAGTCTTTCTGGATGTTGTAATCAGAGAGGGTGCTGCCATCTTCCAGATGCTTGCCT 9098710 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || ||||||| | || ||||| || || | ||||||||| ||||||| ||| Sbjct 9098711 GCA-AAATGAGCCTCTACTGATCAGGGGGAATGTACTCTTTATCCTGGATCTTGGCCTTC 9098769 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | ||| || | |||||| ||| || || || || || || | ||||| ||||| || Sbjct 9098770 ACGGTCTCGATAGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 9098829 Query 27231 TTCACAAAGATTTGCAT 27247 ||||||||||| ||||| Sbjct 9098830 TTCACAAAGATGTGCAT 9098846 >seq13 Length=116904986 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| ||||||| | || |||| | || || || ||||| || || ||||||| Sbjct 35782728 TGCCACCGCGCAGACACAGCACCAGGTACAAGGTGGACTCTTTCTGGATGTTGTAGTGCA 35782787 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 || | |||| | || || |||| ||| | ||| | || || | ||| || || || | Sbjct 35782788 ACAGGGTGCGGCCATCCTCCAGCTCTTTGCTGGCAAATATCAGCCTCTGCTGGTCAGGTG 35782847 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | || || || || ||||||| || | | || | ||||| ||| |||| Sbjct 35782848 GGATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCAA 35782907 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || ||||| || | ||||||||||| || ||||||||||| ||||| Sbjct 35782908 CCTCAAGAGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 35782956 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424921033290072