Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20pahari_20[refseq_20GCF_5F900095145.1_202017-04-28] 2,581 sequences; 2,475,012,951 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq1 109 7e-19 seq10 82.4 1e-10 >seq1 Length=172151128 Score = 109 bits (120), Expect = 7e-19 Identities = 105/135 (78%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 111265 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCC 111324 |||||| ||| |||||||||| ||||||||||| | |||| | || || ||||| Sbjct 73310456 CTCATCTTTACTGGTGTACTCTACTATTTCTGTACACAGGTTGCTGCATTTGATGGTCCC 73310397 Query 111325 CAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 111384 || |||| ||||| |||||| ||| || | ||| |||||||||||||| || || || Sbjct 73310396 CAGGTTCTGCTGGTTGCTCTTCCGGTTACAGGAATCTTTGTAGAGCATGTATGGGGTACC 73310337 Query 111385 CGTCTCCGTCTGTGA 111399 |||||||||||| || Sbjct 73310336 CGTCTCCGTCTGGGA 73310322 >seq10 Length=113323912 Score = 82.4 bits (90), Expect = 1e-10 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 122370 ATAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCAT 122429 ||| ||||| || ||||||||||||||||| |||||||| || || || |||||||| Sbjct 23467781 ATACTCCCCTACTCGCTTCTCAAAGAAGTTCGTCTTCCCTTCGAGTGAGATATTTTCCAT 23467722 Query 122430 AAAGTCAAATGGATT 122444 |||||||||||||| Sbjct 23467721 GAAGTCAAATGGATT 23467707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628011738117600