Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20pahari_20[refseq_20GCF_5F900095145.1_202017-04-28] 2,581 sequences; 2,475,012,951 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq21 87.8 2e-12 >seq21 Length=68186955 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/110 (79%), Gaps = 2/110 (2%) Strand=Plus/Minus Query 59989 TAGCTTTTGCATGC-GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGG 60047 |||| ||||| ||| || |||||||| ||||||||||| || || ||| || |||||| Sbjct 4933715 TAGCCTTTGC-TGCTGTAGAAGGAATTTTCTTCTCTGGATCATTTGCTGCGATATTCTGG 4933657 Query 60048 CTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGAT 60097 || || ||| | ||||||||||| || |||| ||| || || || ||||| Sbjct 4933656 CTAAAGAAGAGAGGCCTCATGCCTGGACTGACTTTTTCAAATGAACTGAT 4933607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548507103218640