Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20pahari_20[refseq_20GCF_5F900095145.1_202017-04-28] 2,581 sequences; 2,475,012,951 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq1 109 7e-19 >seq1 Length=172151128 Score = 109 bits (120), Expect = 7e-19 Identities = 231/343 (67%), Gaps = 4/343 (1%) Strand=Plus/Minus Query 13683 GAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAAGATCGAGATGTTC 13742 |||||||| | ||||| || || || || |||||| | || || || || || ||| | Sbjct 129345994 GAAGAGGTAGGCTTTCCAATTGCATATTCCATCGTGGTTCATCATAAAATTGAAATGCTT 129345935 Query 13743 GAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTCCACGTGGACTCC 13802 || | ||||||||||||||||| | || ||||| |||||||| | ||||||||| Sbjct 129345934 GACAGGCTCCTGAGGGCCATCTATGTGCCTCAGAATTTCTACTGCATTCACGTGGACAGA 129345875 Query 13803 AAGTCCGGCGA--CGAGTTCATCCGGGGCGTCTCGGCCATCGCCAGGTGCTTCCCTAACG 13860 || | | || | || | ||| | || || |||||| ||||| ||| | Sbjct 129345874 AAAGCAGAGGAATCCTTTTTAGCCGCG--GTGCAGGGCATCGCATCCTGCTTTGATAATG 129345817 Query 13861 TGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGTCGCGTGCAGGCCG 13920 | ||||| || | || | || || || | ||||||||||| || |||| | Sbjct 129345816 TCTTTGTGGCCAGCCAGTTGGAGAGTGTTGTTTATGCATCCTGGAGTCGGGTTAAGGCTG 129345757 Query 13921 ACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGGTACCTGCTCAACC 13980 |||||| ||||||| ||||||| || | || |||| |||| || |||| | Sbjct 129345756 ACCTCAACTGCATGAAGGACCTGTACAGAATGAATGCAAACTGGAAGTACTTGATCAATC 129345697 Query 13981 TGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGT 14023 | || || ||||| ||||| | || ||||| ||||| || || Sbjct 129345696 TTTGTGGTATGGATTTCCCTATTAAAACCAATCTGGAAATTGT 129345654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658717947426560