Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20pahari_20[refseq_20GCF_5F900095145.1_202017-04-28] 2,581 sequences; 2,475,012,951 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq17 141 8e-29 seq9 141 8e-29 seq4 89.7 4e-13 >seq17 Length=88915856 Score = 141 bits (156), Expect = 8e-29 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || || |||| |||||| | || ||||||||||| || || Sbjct 64220211 CATGCAGATCTTTGTGAAGACCCTGATGGGCAAGACCATCACTCTTGAAGTAGAGCCCAG 64220152 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || | || |||| ||||| || || |||||||| |||||| | ||||| || || Sbjct 64220151 TGATACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCCTCCCACCTGACCA 64220092 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | | |||| ||||||||||| |||| || | | ||| | || |||||||| Sbjct 64220091 GCAGAGGCTGATATTTGCCGGCAAACAGCTGGAGGATGGCTGCACCCTGTCTGATTACAA 64220032 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || ||||| ||||| || |||| ||||| ||||||||||||| Sbjct 64220031 CACCCAGAAAGAGTCCACCTTGCACCTGGTGCTGCGTCTGCGGGGTGGCAT 64219981 >seq9 Length=107150856 Score = 141 bits (156), Expect = 8e-29 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || ||||| |||||| | || |||||||| || || || Sbjct 83841283 CATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACTCTTGAGGTCGAGCCCAG 83841224 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || |||| ||||| || || |||||||| |||||||| ||||| || || Sbjct 83841223 TGACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCACCTGACCA 83841164 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | | |||| |||||||||||| |||| || | ||| | || || ||||| Sbjct 83841163 GCAGAGGCTGATATTCGCCGGCAAACAGCTGGAGGATGGCCACACCCTCTCGGACTACAA 83841104 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || || ||||| ||||| || |||| ||||| |||| |||||||| Sbjct 83841103 CATCCAGAAAGAGTCCACCTTGCACCTGGTGCTGCGTCTGCGCGGTGGCAT 83841053 Score = 138 bits (152), Expect = 1e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || ||||| |||||| | || |||||||| || || || Sbjct 80898671 CATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACTCTTGAGGTCGAGCCCAG 80898612 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || |||| ||||| || || |||||||| |||||||| ||||| || || Sbjct 80898611 TGACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCACCTGACCA 80898552 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | | |||| ||||||||||| |||| || | ||| | || || ||||| Sbjct 80898551 GCAGAGGCTGATATTTGCCGGCAAACAGGTGGAGGATGGCCACACCCTCTCGGACTACAA 80898492 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || || ||||| ||||| || |||| ||||| |||| |||||||| Sbjct 80898491 CATCCAGAAAGAGTCCACCTTGCACCTGGTGCTGCGTCTGCGCGGTGGCAT 80898441 >seq4 Length=164141553 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || || || || || | || || || || || ||||| || Sbjct 18056769 ATGCAGATTTTTGTGAAGACCCTTACGGGAAAAACCATCACGCTCGAGGTTGAACCCTCG 18056710 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || || || || || ||||| || || || ||||| Sbjct 18056709 GACACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 18056650 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | || || || || ||||||| | || | || || |||||| Sbjct 18056649 CAGAGGTTGATCTTTGCTGGTAAGCAGCTGGAAGATGGCCGTACTTTGTCGGACTACAAC 18056590 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || ||||||||||| ||| | ||| | || ||| | | |||||||| Sbjct 18056589 ATCCAAAAGGAGTCTACCCTTCATCTTGTGTTGAGACTTCGGGGTGG 18056543 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || || || || || | || || || || || ||||| || Sbjct 99334782 ATGCAGATTTTTGTGAAGACCCTTACGGGAAAAACCATCACGCTCGAGGTTGAACCCTCG 99334723 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || || || || || ||||| || || || ||||| Sbjct 99334722 GACACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 99334663 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | || || || || ||||||| | || | || || |||||| Sbjct 99334662 CAGAGGTTGATCTTTGCTGGTAAGCAGCTGGAAGATGGCCGTACTTTGTCGGACTACAAC 99334603 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || ||||||||||| ||| | ||| | || ||| | | |||||||| Sbjct 99334602 ATCCAAAAGGAGTCTACCCTTCATCTTGTGTTGAGACTTCGGGGTGG 99334556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434904368445120