Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20pahari_20[refseq_20GCF_5F900095145.1_202017-04-28] 2,581 sequences; 2,475,012,951 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq2 149 6e-31 >seq2 Length=163939365 Score = 149 bits (164), Expect = 6e-31 Identities = 132/165 (80%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 6616 GACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAA 6675 || ||| || |||||||| ||||||||||| || || ||||||||||| ||||| || | Sbjct 24269908 GATATGTGCAATCATGTAGGTGAGCAGAGCATAGCTGGCAATGTTGAAGGGCACACCCAG 24269967 Query 6676 CCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAA 6735 ||||| ||||| || | || || |||||||| || |||||||||||| | || ||||| Sbjct 24269968 ACCCATATCTCCTGACCTCTGGTAAAGCTGGCAAGATAGCTCCCCATTCACCACATAGAA 24270027 Query 6736 TTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 |||||||||| ||||| || || || |||||||| || ||||| Sbjct 24270028 CTGGCAGAGGGCATGGCAAGGAGGCAGTGCCATCAGGGGAAGATC 24270072 Score = 149 bits (164), Expect = 6e-31 Identities = 132/165 (80%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 ||||| || |||||||| || || || ||||| |||||||||| ||||| || | |||| Sbjct 24270072 GATCTTCCCCTGATGGCACTGCCTCCTTGCCATGCCCTCTGCCAGTTCTATGTGGTGAAT 24270013 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 |||||||| || |||||||| || || | || ||||| ||||| | || ||||| ||| Sbjct 24270012 GGGGAGCTATCTTGCCAGCTTTACCAGAGGTCAGGAGATATGGGTCTGGGTGTGCCCTTC 24269953 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTC 34729 |||||||| || || ||||||||||| |||||||| || ||| || Sbjct 24269952 AACATTGCCAGCTATGCTCTGCTCACCTACATGATTGCACATATC 24269908 Score = 84.2 bits (92), Expect = 2e-11 Identities = 75/94 (80%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 6782 TTCGGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCG 6841 || |||||||| || ||||| | ||| ||||||||||||||||| || | |||||| Sbjct 24270778 TTTGGGTTCCAGGCACACATGATGATTCTTCTGTCATCAGGGTTGGTTTTGATGGTGTCA 24270837 Query 6842 ATCACGTACTGCAGCTGGTCCGCTCCCTGTCCCG 6875 ||||| | ||||||||||| |||| ||||||| Sbjct 24270838 ATCACTTTTTGCAGCTGGTCTACTCCTTGTCCCG 24270871 Score = 84.2 bits (92), Expect = 2e-11 Identities = 75/94 (80%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 34470 CGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTTGAAGCGGAACCCTGATG 34529 ||||||| |||| ||||||||||| | ||||| |||||| | || |||||||||| Sbjct 24270871 CGGGACAAGGAGTAGACCAGCTGCAAAAAGTGATTGACACCATCAAAACCAACCCTGATG 24270812 Query 34530 ACAGAAGGATCGTGATGTGCGCGTGGAACCCGAA 34563 ||||||| ||| | ||||| || |||||||| || Sbjct 24270811 ACAGAAGAATCATCATGTGTGCCTGGAACCCAAA 24270778 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 ||||| || ||||| || ||||| ||||| || || || ||||||| ||| || |||| Sbjct 24274813 TACTCTGCTCCAAAATGCCTCCATTGGAAACCATAAACTGGGCCCAGGTCCCCTTCCTGT 24274872 Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 || | | || ||| |||||||||||||||| ||||| | || |||||||| || Sbjct 24274873 CGGGCAGAAAATCCCAAGCTGTCCAGAAAGTCTCGGGACCCATTGGCATCCCAGATTCTC 24274932 Query 7019 ACCCCCCGGGACGA 7032 || ||| ||| || Sbjct 24274933 ACTCCCTTGGAGGA 24274946 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 34313 TCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGG 34372 || ||| ||| |||| |||||||| || | ||||| |||||||||||||||| | Sbjct 24274946 TCCTCCAAGGGAGTGAGAATCTGGGATGCCAATGGGTCCCGAGACTTTCTGGACAGCTTG 24274887 Query 34373 GGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACAC 34432 || || | | || |||| || ||| ||||||| || || || ||||| ||||| || Sbjct 24274886 GGATTTTCTGCCCGACAGGAAGGGGACCTGGGCCCAGTTTATGGTTTCCAATGGAGGCAT 24274827 Query 34433 TTTGGGGCGGAGTA 34446 ||||| || ||||| Sbjct 24274826 TTTGGAGCAGAGTA 24274813 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448247937934320