Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20pahari_20[refseq_20GCF_5F900095145.1_202017-04-28] 2,581 sequences; 2,475,012,951 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq15 165 7e-36 seq8 122 7e-23 seq2 105 6e-18 seq25 104 2e-17 >seq15 Length=89017189 Score = 165 bits (182), Expect = 7e-36 Identities = 178/236 (75%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 1290 ATTGTAACATGGCAAAAAGTTAAAGCATCAAGCCCAGAAAACATGGCCACTTTTAGTAAT 1349 ||||| |||||||| ||| ||||| ||||||||||||||||| ||| | || || Sbjct 40022281 ATTGTGACATGGCAGAAAAAGAAAGCTGTAAGCCCAGAAAACATGGTCACCTACAGCAAA 40022222 Query 1350 GACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATAAAATGAACATAACTGAGCTTGGA 1409 ||| |||||||| | ||||| || |||||||| | || ||| | |||||||| ||| Sbjct 40022221 ACCCATGGGGTTGTAATCCAGCCTGCCTACAAAGACAGGATAAACGTCACTGAGCTGGGA 40022162 Query 1410 CTACAAAACACAACTATAACCTTCTGGAACACAACATTGGATGATGAAGGGTGCTACAAG 1469 || ||| | | || ||||||||||||||||| ||||| ||||| || ||||||| | Sbjct 40022161 CTCTGGAACTCCAGCATCACCTTCTGGAACACAACGTTGGAAGATGAGGGTTGCTACATG 40022102 Query 1470 TGTTTATTTAACACTTTTGGATCTGGGAAGATGTCAGGAATAGGGTGTCTAACCCT 1525 ||| | || ||||| ||||| ||| ||| | ||||||| || || || ||||| Sbjct 40022101 TGTCTCTTCAACACGTTTGGTTCTCAGAAAGTCTCAGGAACAGCTTGCCTTACCCT 40022046 >seq8 Length=167013402 Score = 122 bits (134), Expect = 7e-23 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || || |||||| | |||||||| ||||||||| | ||||| || ||||||||| Sbjct 82717623 GTGGTGGAGGAACTCTTCAGGGATGGGGTGAACTGGGGGAGGATTGTGGCCTTCTTTGAG 82717564 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 || ||||| || ||||||||||| |||||||| || | || | |||| || |||||| Sbjct 82717563 TTCGGTGGGGTCATGTGTGTGGAGAGCGTCAACAGGGAGATGTCACCCCTGGTGGACAAC 82717504 Query 3365 ATTGCCGCGTGGATGACAGA 3384 || ||| ||||||||| || Sbjct 82717503 ATCGCCCTGTGGATGACTGA 82717484 >seq2 Length=163939365 Score = 105 bits (116), Expect = 6e-18 Identities = 120/161 (75%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 118534 AGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGA 118593 || ||||| | || ||||||||||| || | || | |||||||| | || || || Sbjct 24269900 AGGCCTGTGATATGTGCAATCATGTAGGTGAGCAGAGCATAGCTGGCAATGTTGAAGGGC 24269959 Query 118594 ACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCA 118653 |||||||||||||| ||| |||| |||||||| | |||||||| |||||||| || | Sbjct 24269960 ACACCCAGACCCATATCTCCTGACCTCTGGTAAAGCTGGCAAGATAGCTCCCCATTCACC 24270019 Query 118654 ACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCAT 118694 ||||| ||||| | | | || || |||||||| |||| Sbjct 24270020 ACATAGAACTGGCAGAGGGCATGGCAAGGAGGCAGTGCCAT 24270060 >seq25 Length=55716805 Score = 104 bits (114), Expect = 2e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 3248 GTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAGTTT 3307 || || || |||||| | |||||||| ||||||||| | || | || ||||||||||| Sbjct 31973494 GTGGAGGAACTCTTCAGGGATGGGGTGAACTGGGGGAGGATCATGGCCTTCTTTGAGTTC 31973553 Query 3308 GGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAACATT 3367 ||||| || ||||||||||| |||||||| || | || | |||| || |||| ||| Sbjct 31973554 GGTGGGGTCATGTGTGTGGAGAGCGTCAACAGGGAGATGTCACCCCTGGTGGACAGCATC 31973613 Query 3368 GCCGCGTGGATGACAGA 3384 || ||||||||| || Sbjct 31973614 ACCCTGTGGATGACTGA 31973630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414463762243684