Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20pahari_20[refseq_20GCF_5F900095145.1_202017-04-28] 2,581 sequences; 2,475,012,951 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq17 82.4 7e-11 >seq17 Length=88915856 Score = 82.4 bits (90), Expect = 7e-11 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| || | ||| |||||| || | || ||||| | || || | | || || Sbjct 64220001 CACCAGGTGCAAGGTGGACTCTTTCTGGGTGTTGTAATCAGACAGGGTGCAGCCATCCTC 64220060 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCA 39193 ||||||||||| |||||||| || | ||||||||| |||||| | || || ||||| Sbjct 64220061 CAGCTGTTTGCCGGCAAATATCAGCCTCTGCTGGTCAGGTGGG-AGGCCTTCCTTGTCTT 64220119 Query 39194 TGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 ||| || |||| || | | ||||| || | ||| || || | ||||| | | Sbjct 64220120 GGATCTTGGCCTTGACATTCTCGATGGTATCACTGGGCTCTACTTCAAGAGTGATGGTCT 64220179 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 | ||| |||| || || |||||||| ||||| || Sbjct 64220180 TGCCCATCAGGGTCTTCACAAAGATCTGCATGTT 64220213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429532088240453