Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20pahari_20[refseq_20GCF_5F900095145.1_202017-04-28] 2,581 sequences; 2,475,012,951 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq4 122 6e-23 seq1 98.7 7e-16 seq9 96.9 2e-15 seq17 91.5 1e-13 seq13 91.5 1e-13 >seq4 Length=164141553 Score = 122 bits (134), Expect = 6e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || ||||| ||||||||||| ||||| ||||| ||||| || || Sbjct 18056769 ATGCAGATTTTTGTGAAGACCCTTACGGGAAAAACCATCACGCTCGAGGTTGAACCCTCG 18056710 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| | |||| |||| || || || || ||||| | || || ||||| Sbjct 18056709 GACACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 18056650 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | || || ||||| || || || |||||||| | || ||||| || |||||| Sbjct 18056649 CAGAGGTTGATCTTTGCTGGTAAGCAGCTGGAAGATGGCCGTACTTTGTCGGACTACAAC 18056590 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 || ||||| ||||| || | ||| | || || || Sbjct 18056589 ATCCAAAAGGAGTCTACCCTTCATCTTGTGTTGAG 18056555 Score = 122 bits (134), Expect = 6e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || ||||| ||||||||||| ||||| ||||| ||||| || || Sbjct 99334782 ATGCAGATTTTTGTGAAGACCCTTACGGGAAAAACCATCACGCTCGAGGTTGAACCCTCG 99334723 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| | |||| |||| || || || || ||||| | || || ||||| Sbjct 99334722 GACACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 99334663 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | || || ||||| || || || |||||||| | || ||||| || |||||| Sbjct 99334662 CAGAGGTTGATCTTTGCTGGTAAGCAGCTGGAAGATGGCCGTACTTTGTCGGACTACAAC 99334603 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 || ||||| ||||| || | ||| | || || || Sbjct 99334602 ATCCAAAAGGAGTCTACCCTTCATCTTGTGTTGAG 99334568 >seq1 Length=172151128 Score = 98.7 bits (108), Expect = 7e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || ||| | ||||||||||| |||| ||| | ||||| || || Sbjct 144045492 ATGCAGATTTTTGTGAAGACCTTTACGGGAAAAACCATCAAGCTCAAGGTTGAACCCTCG 144045433 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| | |||| |||| || || || || ||||| | || || ||| | Sbjct 144045432 GACACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATGAG 144045373 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGAT-TACAA 23789 ||| | || || ||||| || || || |||||||| | || ||||| | | | ||||| Sbjct 144045372 CAGAGATTGATCTTTGCGGGTAAGCAGCTGGAAGATGGCCGTACTTT-GTCTTTCTACAA 144045314 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| ||||| ||||| || Sbjct 144045313 CATTCAAAAGGAGTCTAC 144045296 >seq9 Length=107150856 Score = 96.9 bits (106), Expect = 2e-15 Identities = 147/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| ||||| || ||||| ||||| || || |||||||| || || || || Sbjct 80898673 AACATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACTCTTGAGGTCGAGCCC 80898614 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| | || ||| | || | || | | ||||| ||||| | || || || Sbjct 80898613 AGTGACACCATCGAGAATGTCAAGGCCAAGA-TCCAAGACAAGGAAGGCATCCCACCTGA 80898555 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 || ||| | | ||||||||||||||||| |||| || | | ||| | || || Sbjct 80898554 CCAGCAGAGGCTGATATTTGCCGGCAAACAGGTGGAGGATGGCCACACCCTCTCGGACTA 80898495 Query 23787 CAACATACAAAAAGAGTCCACATTACA 23813 |||||| || ||||||||||| || || Sbjct 80898494 CAACATCCAGAAAGAGTCCACCTTGCA 80898468 Score = 96.9 bits (106), Expect = 2e-15 Identities = 147/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| ||||| || ||||| ||||| || || |||||||| || || || || Sbjct 83841285 AACATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACTCTTGAGGTCGAGCCC 83841226 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| | || ||| | || | || | | ||||| ||||| | || || || Sbjct 83841225 AGTGACACCATCGAGAATGTCAAGGCCAAGA-TCCAAGACAAGGAAGGCATCCCACCTGA 83841167 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 || ||| | | ||||| ||||||||||| ||||| || | | ||| | || || Sbjct 83841166 CCAGCAGAGGCTGATATTCGCCGGCAAACAGCTGGAGGATGGCCACACCCTCTCGGACTA 83841107 Query 23787 CAACATACAAAAAGAGTCCACATTACA 23813 |||||| || ||||||||||| || || Sbjct 83841106 CAACATCCAGAAAGAGTCCACCTTGCA 83841080 >seq17 Length=88915856 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| || || || ||||| | ||| || || |||||||| ||||| || || Sbjct 64220213 AACATGCAGATCTTTGTGAAGACCCTGATGGGCAAGACCATCACTCTTGAAGTAGAGCCC 64220154 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | || || | || ||| | || | || | | ||||| ||||| | || || || Sbjct 64220153 AGTGATACCATCGAGAATGTCAAGGCCAAGA-TCCAAGACAAGGAAGGCCTCCCACCTGA 64220095 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 || ||| | | ||||||||||||||||| ||||| || | |||| | ||||| Sbjct 64220094 CCAGCAGAGGCTGATATTTGCCGGCAAACAGCTGGAGGATGGCTGCACCCTGTCTGATTA 64220035 Query 23787 CAACATACAAAAAGAGTCCACATTACA 23813 ||||| || ||||||||||| || || Sbjct 64220034 CAACACCCAGAAAGAGTCCACCTTGCA 64220008 >seq13 Length=116904986 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| || || || ||||| ||||| || || |||||||| || ||||| || Sbjct 35782959 AACATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACTCTTGAGGTTGAGCCC 35782900 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| | || ||| | || | || | | ||||| ||||| | || || || Sbjct 35782899 AGTGACACCATCGAGAATGTCAAGGCCAAGA-TCCAAGACAAGGAAGGCATCCCACCTGA 35782841 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 || ||| | | ||||||||| ||||| | ||||| || | ||||| | | || Sbjct 35782840 CCAGCAGAGGCTGATATTTGCCAGCAAAGAGCTGGAGGATGGCCGCACCCTGTTGCACTA 35782781 Query 23787 CAACATACAAAAAGAGTCCACATT 23810 |||||| || ||||||||||| || Sbjct 35782780 CAACATCCAGAAAGAGTCCACCTT 35782757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337998967591148