Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20pahari_20[refseq_20GCF_5F900095145.1_202017-04-28] 2,581 sequences; 2,475,012,951 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq9 116 9e-21 seq6 113 1e-19 seq4 105 2e-17 seq17 102 2e-16 seq16 98.7 2e-15 seq19 95.1 3e-14 seq13 93.3 1e-13 seq8 89.7 1e-12 >seq9 Length=107150856 Score = 116 bits (128), Expect = 9e-21 Identities = 160/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | ||| || ||||| | ||||| ||||| |||| ||||| || | | || Sbjct 83841062 CGCAGACGCAGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCCGAGAGGGTG 83841121 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 ||||| || ||||| || || ||||| || || | || ||||| || || || ||| Sbjct 83841122 TGGCCATCCTCCAGCTGTTTGCCGGCGAATATCAGCCTCTGCTGGTCAGGTGGGATGCCT 83841181 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 ||||||||||||||||| ||| ||| ||||||||||| || || || || | Sbjct 83841182 TCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCAAGA 83841241 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| ||||||||||||| || || | ||| | ||||| || Sbjct 83841242 GTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATGTT 83841285 Score = 107 bits (118), Expect = 5e-18 Identities = 158/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | ||| || ||||| | ||||| ||||| |||| ||||| || | | || Sbjct 80898450 CGCAGACGCAGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCCGAGAGGGTG 80898509 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 ||||| || | ||| || || || || || || | || ||||| || || || ||| Sbjct 80898510 TGGCCATCCTCCACCTGTTTGCCGGCAAATATCAGCCTCTGCTGGTCAGGTGGGATGCCT 80898569 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 ||||||||||||||||| ||| ||| ||||||||||| || || || || | Sbjct 80898570 TCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCAAGA 80898629 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| ||||||||||||| || || | ||| | ||||| || Sbjct 80898630 GTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATGTT 80898673 Score = 91.5 bits (100), Expect = 4e-13 Identities = 142/201 (71%), Gaps = 4/201 (2%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGT---GGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAA 225548 ||||||||||| ||||||| | || || || || ||||| | ||||| || | ||| Sbjct 86261797 ACGAAGTCTCAACACAAGGTGAGGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGACAA 86261856 Query 225549 AGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAAT 225608 ||| | | |||||| |||||||| ||||| ||||| | | || || || || ||| Sbjct 86261857 AGTACGGCGATCTTCCAGCTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGG-AGAAG 86261915 Query 225609 ACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTC 225668 |||||||| || | | |||| ||| ||| || || ||||| |||| ||| | || Sbjct 86261916 TCCTTCCTTATCCTAGGTCTTGGACTTTACATTATCTATAGTGTCCGAGGGTTCATCCTC 86261975 Query 225669 TAACGTGATCGTCTTGCCCGT 225689 | |||||| | ||| || || Sbjct 86261976 GAGCGTGATGGCCTTCCCTGT 86261996 >seq6 Length=146485248 Score = 113 bits (124), Expect = 1e-19 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 225496 AGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTC 225555 ||||||| ||||| || || |||| || ||||| | ||||| || | |||| | | Sbjct 104811131 AGTCTCAACACAAGATGAAGGATGGACTCCTTTTGAATGTTGTAGTCAGACAAAATACAG 104811072 Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 ||||||||||||||||| ||||| ||||| | | || || || || ||||| | |||| Sbjct 104811071 CCATCTTCTAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGATCAGGAGGAATTCTTTCC 104811012 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 || || |||||||| ||| ||| ||| || ||||| ||| ||| || | | ||| Sbjct 104811011 TTATCCTGGATCTTGACCTTTACATTTTCTATAGTGTCCAAGGGTTCAACCCCAAGTGTG 104810952 Query 225676 ATCGTCTTGCCC 225687 || ||||| ||| Sbjct 104810951 ATGGTCTTCCCC 104810940 >seq4 Length=164141553 Score = 105 bits (116), Expect = 2e-17 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 225520 GATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCG 225579 || ||||| |||| |||||||| | | || | |||||||| |||||||| ||||| Sbjct 104846262 GACTCTTTCTGGATGTTGTAATCAGAGAGGGTGCAGCCATCTTCCAGCTGCTTGCCAGCA 104846203 Query 225580 AAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACA 225639 ||||| | | ||| ||||| || || || || || || || |||||||| ||||| Sbjct 104846202 AAGATGAACCTTTGCTGGTCAGGGGGGATGCCCTCTTTATCCTGGATCTTGGCTTTCACG 104846143 Query 225640 GCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTT 225699 ||||||||||| || ||||| |||| ||||| || ||| |||| || || Sbjct 104846142 TTCTCGATGGTGTCACTGGGCTCCACCTCTAGAGTGATGGTTTTGTTGGTCAGGGTCTTC 104846083 Query 225700 ATGAACACTTGCATTTTA 225717 |||| | |||||||||| Sbjct 104846082 TTGAAGATTTGCATTTTA 104846065 Score = 100 bits (110), Expect = 7e-16 Identities = 150/212 (71%), Gaps = 1/212 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || ||||| || || || | ||||| ||||| |||| ||||| || | || || Sbjct 128787406 CGCAGACTCAGCACCAGTTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCCGACAGGGTG 128787347 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | ||||| || ||||| || || | || || || | | ||||| || || || ||| Sbjct 128787346 CAGCCATCCTCCAGCTGTTTGCCT-CAAATATCAGCCTCAGCTGGTCAGGTGGGATGCCT 128787288 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 ||||||||||||||||| ||| ||| ||||||||||| || || || || | Sbjct 128787287 TCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCAACCTCAAGA 128787228 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAA 225704 ||||| ||||||||| ||| || || | ||| Sbjct 128787227 GTGATGGTCTTGCCCATCAGGGTCTTCAGGAA 128787196 Score = 95.1 bits (104), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 8/191 (4%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||||||||||| ||||| || || || || || ||||| | |||| ||||| Sbjct 77711501 ACGAAGTCTCAACACAAGATGAAGGGTAGACTCCTTTTGAATGTTGT--------AAAGT 77711450 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| |||||||| ||||| ||||| | | || || | || ||||| || Sbjct 77711449 ACGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGACCAGGAGGAATTCC 77711390 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 || ||| || |||||||| ||| | | ||| || |||||||||| ||| || || | Sbjct 77711389 TTTCTTATCCTGGATCTTGGCCTTTATATTTTCTATAGTGTCTGAGGGTTCAACCTCGAG 77711330 Query 225672 CGTGATCGTCT 225682 | ||| |||| Sbjct 77711329 CATGAGGGTCT 77711319 Score = 86.0 bits (94), Expect = 1e-11 Identities = 121/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 225535 TTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGT 225594 ||||| || | || || | ||||| || ||||| || | || || || || | || Sbjct 149231672 TTGTAGTCCGACAGGGTGCAGCCATCCTCCAGCTGTTTGCTGGCAAATATCAGCCTCTGC 149231731 Query 225595 TGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCT 225654 ||||| || || || |||||||||||||||||||| ||| ||| |||||| |||| Sbjct 149231732 TGGTCAGGTGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGTTGTCA 149231791 Query 225655 GAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAA 225704 || || || || | ||||| ||||||||||||| || || | ||| Sbjct 149231792 CTGGGCTCGACCTCAAGAGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 149231841 >seq17 Length=88915856 Score = 102 bits (112), Expect = 2e-16 Identities = 142/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | ||| || ||||| | ||||| ||||| ||| |||||||| | || || Sbjct 64219990 CGCAGACGCAGCACCAGGTGCAAGGTGGACTCTTTCTGGGTGTTGTAATCAGACAGGGTG 64220049 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | ||||| || ||||| || || || || || || | || ||||| || || | ||| Sbjct 64220050 CAGCCATCCTCCAGCTGTTTGCCGGCAAATATCAGCCTCTGCTGGTCAGGTGGGAGGCCT 64220109 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 ||||||||||||||||| ||| ||| |||||||| || || || || || | Sbjct 64220110 TCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTATCACTGGGCTCTACTTCAAGA 64220169 Query 225673 GTGATCGTCTTGCCCGTCA 225691 ||||| ||||||||| ||| Sbjct 64220170 GTGATGGTCTTGCCCATCA 64220188 >seq16 Length=96704406 Score = 98.7 bits (108), Expect = 2e-15 Identities = 148/208 (71%), Gaps = 3/208 (1%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGG-TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAG 225550 ||||||||||| |||||| | || || || |||||||| | |||| || | |||| Sbjct 4426012 ACGAAGTCTCAACACAAGGCTAAAGGGTAGACTCTTTTTGAATGCTGTAGTCAGAGAAAG 4425953 Query 225551 TTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATAC 225610 | ||||||| ||||| || ||||| ||||| || | || || || || ||||| | Sbjct 4425952 TATGGTCATCTTCCAGCTGTTTACCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATTC 4425893 Query 225611 CTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTA 225670 |||||| || ||| |||| ||| ||| ||| | ||||| |||| ||| || || | Sbjct 4425892 TTTCCTTATCCTGGGTCTTGGCCTTTACATTTTC--TAGTGTCCGAGGATTCAACCTCCA 4425835 Query 225671 ACGTGATCGTCTTGCCCGTCAAAGTTTT 225698 ||||| || || ||||| || || || Sbjct 4425834 GTGTGATGGTTTTCCCCGTAAAGGTCTT 4425807 >seq19 Length=82564344 Score = 95.1 bits (104), Expect = 3e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 4471 AATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCT 4530 |||| || || ||||| || || ||||||||||| || || ||||| || |||||||| Sbjct 70840969 AATACCTGTCCGTCAGTGATGGAAATAACATTTGTTGGAATGTAAGCGGACACATCACCA 70840910 Query 4531 GCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAA 4577 || |||||||||| || |||||||| || | || ||||||||||| Sbjct 70840909 GCCTGTGTTTCGATGACTGGTAAGGCAGTCAAAGAGCCACCACCAAA 70840863 >seq13 Length=116904986 Score = 93.3 bits (102), Expect = 1e-13 Identities = 140/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | ||| || |||| | ||||| ||||| |||| ||||| | || || Sbjct 35782736 CGCAGACACAGCACCAGGTACAAGGTGGACTCTTTCTGGATGTTGTAGTGCAACAGGGTG 35782795 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | ||||| || |||| || | || || || || | || ||||| || || || ||| Sbjct 35782796 CGGCCATCCTCCAGCTCTTTGCTGGCAAATATCAGCCTCTGCTGGTCAGGTGGGATGCCT 35782855 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 ||||||||||||||||| ||| ||| ||||||||||| || || || || | Sbjct 35782856 TCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCAACCTCAAGA 35782915 Query 225673 GTGATCGTCTTGCCCGTCA 225691 ||||| ||||||||||||| Sbjct 35782916 GTGATGGTCTTGCCCGTCA 35782934 >seq8 Length=167013402 Score = 89.7 bits (98), Expect = 1e-12 Identities = 135/192 (70%), Gaps = 10/192 (5%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||||||||||| ||||| || ||||| || || ||||| | |||| || | |||||| Sbjct 14199142 ACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATGGTGTAGTCAGACAAAGT 14199083 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | | |||||| ||||| || ||||| ||||| | | | || || || |||| Sbjct 14199082 ACAGCTATCTTCCAGCTGTTTACCAGCAAAGATCA-ACCTCTCTGATCAGGAGGAA---- 14199028 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||| ||| |||| ||| ||| ||| | |||||||||| ||| || |||| Sbjct 14199027 -----TGTCCTGGGTCTTGGCCTTTACATTTTCTTTAGTGTCTGAGGGTTCAACCTCTAG 14198973 Query 225672 CGTGATCGTCTT 225683 |||||| ||||| Sbjct 14198972 CGTGATGGTCTT 14198961 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192491764111214