Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20pahari_20[refseq_20GCF_5F900095145.1_202017-04-28] 2,581 sequences; 2,475,012,951 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq1997 228 7e-55 seq9 192 5e-44 seq10 100 2e-16 seq21 91.5 1e-13 >seq1997 Length=85722 Score = 228 bits (252), Expect = 7e-55 Identities = 576/864 (67%), Gaps = 20/864 (2%) Strand=Plus/Plus Query 4271 TACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAA 4330 ||||| ||| || ||||| || || || ||||||| |||| ||||||| | | ||||| Sbjct 33381 TACTCACTTCTCAAAGAAGTTTGTCTTTCCTTCTAGTGAAACATTTTCCTTGACGTCAAA 33440 Query 4331 CGGATTAGTTGCGTTGT---AATGTTTTTCACACTTTAGAGCTACAAG--CAATCGGTCA 4385 ||||| || | | | ||| || || | || |||| || || | |||| Sbjct 33441 TGGATTT-TTCCACTCTGAAAATCTTGTTAAGACCC---AGCTCCAGTGTCAGCCTGTCA 33496 Query 4386 GCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTCACAGGT 4445 | | |||||| || ||||| |||| | ||| || | || | | ||||||| Sbjct 33497 GTCAAAAATTCAATGTACTGCTTCATCAAAGTGCAATTCGTCCCGAAGAGCTTCACAGGC 33556 Query 4446 AGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTTATT 4505 | || | || | |||||||| ||||| | || | | ||| |||| ||||||| | Sbjct 33557 AAGGCCTTCGTGAGGAACTCTTGCTCTATCCTAACCGTGTTGGTGTTTATTTCTTTTACT 33616 Query 4506 TTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAATCACAATGC 4565 | | | |||| || | ||| || |||| | ||||| || || || Sbjct 33617 CTTTGCTCCAATGGCTTGTGTACCTGGTGCTTGAACATCGGGCGGGCAAAGTCCCAGTGT 33676 Query 4566 AAACCTTCGTCTCT-GCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCT 4624 ||||| |||||||| |||||| || || || ||||| || | || ||||| | || | Sbjct 33677 AAACCCTCGTCTCTTGCTAATAAGCTCATTGGAAAATGTAAGGCCTGGCATCAGACTGCG 33736 Query 4625 CTTTTTAAGCCAAAAT-ATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGG 4683 || || ||||| | | || | ||||| || ||||||||||| || | ||| || || Sbjct 33737 ATTCTTGAGCCAGAGTTATCGATGCAAAAGAACCAGAAAAGAAGATTCTTTCCACCATGG 33796 Query 4684 CAAACGCTACTAATCGGGACCCGAA----CGAGCTGGCTTTGTCTTTAATCCATTTTAAT 4739 |||| | || | || || | | | | | ||||| |||||| || Sbjct 33797 CAAAGACCACAACTCATTCTCCAATGTCCCCAATTCTCCTTGTCCCCAATCCAACACAAG 33856 Query 4740 GCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATA-ATTTACT 4798 ||||||| ||| || ||||| || || || ||||| || ||||| || || | || | || Sbjct 33857 GCCCAGTCAGCCTTCTTCTTCACACAAGGCATTGTTTAAATAGCATTGAAGAGATATTCT 33916 Query 4799 TTTTTCAAATGGG-TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTA 4857 ||| | |||| |||| ||| |||||||| || || || || ||||||||||| | || Sbjct 33917 CTTTCCT--TGGGATCTTTAATGTAAGTGTCCATAAGGAGACTGTACATTTCAGAGTATA 33974 Query 4858 TATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGT 4917 || || || ||||| || || || || || || | || ||||| ||||||||||| | Sbjct 33975 CGTTCTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCCTCTGTAACTTGAACTTCTT 34034 Query 4918 TACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCA 4977 | ||||| || || |||||||| || ||||| || |||| ||||||||| |||| Sbjct 34035 GGCTAAATCGCTCCACCAAGTTTTCATTGACTATGCCACCACTCATTGCAAAAAA-GCCA 34093 Query 4978 AAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTT 5037 ||| |||||||||| | || || || || | | ||||||||| | | | | | Sbjct 34094 GAACGTGAGATATAAGATGTCTCTCATCGGGTTTCTGATCTTTCCAGTGTTGAATAGCCT 34153 Query 5038 TAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACC 5097 | | | || || || || |||||||||| || | || ||||| |||||||| || Sbjct 34154 TGGAAATGTCCACCTCCTCGGCAGTCCAAAAGGAGGTCTCAGCTTTCTTGTACATTTGCC 34213 Query 5098 AAATATCAGGATACTGAATCGGAA 5121 |||||| | || | ||| |||| Sbjct 34214 TGATATCATGGTATTCAATGGGAA 34237 >seq9 Length=107150856 Score = 192 bits (212), Expect = 5e-44 Identities = 579/882 (66%), Gaps = 38/882 (4%) Strand=Plus/Plus Query 4260 TGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCC 4319 || || ||| | ||||||| || ||||| || || || |||| || |||||||||||| Sbjct 26404239 TGCTACTCGCCTCCTCGCTTCTCAAAGAAGTTTGTCTTTCCTTGTAGTGAAATATTTTCC 26404298 Query 4320 ATAAAATCAAACGGATTAGTTGCGTTGTAA-TGTTTTTCACACTTTAGAGCTACA--AGC 4376 || || ||||| ||||| | | || || | || || | || |||| || | Sbjct 26404299 ATGAAGTCAAATGGATTTTCTACTCTGAAAATCTTATTAAAACCC---AGCTCCAGCATA 26404355 Query 4377 AATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAAT 4436 | | ||| || |||||||| | ||||| |||| | | | || || | || | | Sbjct 26404356 AGCCTGTCGGCCACAAATTCAAAGTACTGCTTCATCAAAGTGTAATTCATCCAGATGAGT 26404415 Query 4437 CTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATA 4496 ||||||| | || | | | ||| | || ||||| | || | | | |||||| Sbjct 26404416 TTCACAGGCAAGGCCTTGATGAGGAACGCCTGCTCTATCCTAACCACGTTGGCGATTATT 26404475 Query 4497 TCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAA 4556 |||||| | | | || ||||| || | ||| | || || | | || |||| Sbjct 26404476 TCTTTTCCTCTCTGCTTTGATGGCTTGTGTACCAGGTGCTTGAAAATCAGGCAGACAAAG 26404535 Query 4557 TCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGC--A 4614 || || | ||||| |||||||||||||| || || || | ||| || | || ||| | Sbjct 26404536 TCCCAGTATAAACCCTCGTCTCTGCTAATAAGCTCATTGGGAAATGTAAGGCCTGGCTCA 26404595 Query 4615 TT---AAA-------CCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAG 4664 || ||| || | || || ||||| ||| | ||||||| |||||||| Sbjct 26404596 TTGGAAAATGTAAGTCCCCGTTTCTTGAGCCAGAATGTCAGTGCAAATGGACCAGAAAAA 26404655 Query 4665 AATA--TGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGT 4722 || | | ||||||| ||||||| || || | || || | || || |||| Sbjct 26404656 AAAAAATTGCTTCTACCTCGGCAAAGGCCACAACTCTTTGTCC---CCAGT--GCATTGT 26404710 Query 4723 CTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAG 4782 | | |||| || ||||| | ||| || || ||| || || ||||| | |||| Sbjct 26404711 CCCCACTCCAAGGCAAGGCCCAATCAGCATTCTTTTTA---CAAGGCATTGTTTCAATAG 26404767 Query 4783 CGTTAAATAATTTACTTT-TTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTA 4841 | || || | | ||| | |||| ||||||| ||| |||||||| || || || || Sbjct 26404768 CATTGAAGAGAT-ACTCTCTTTCTTTGGGGTCTTTAATGTAAGTGTCAATAAGGAGACTG 26404826 Query 4842 TACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCT 4901 || |||||||| ||||| ||||| || ||||| || || || || || || | | ||| Sbjct 26404827 TATATTTCAGAGTGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGTCTCT 26404886 Query 4902 GTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTG 4961 || ||||||||||| | | |||| | | |||||||| | ||||| || |||| Sbjct 26404887 GTAACTTGAACTTCTTGGCTGAATCGCT---CCAAGTTTTCACTGACTATGCCATCACAC 26404943 Query 4962 GCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCA--GGCTTAAGTTTTT 5019 ||||||| || |||| ||| |||| |||| | ||| ||| || || | || Sbjct 26404944 ACTGCAAAGAAAGCCAGAACGTGAGCAATAA---AATGTCTCTCATGGGGTTCAAAGCTT 26405000 Query 5020 TCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCG 5079 |||||| | | ||| || | | || || | ||| |||||||||| || || || | Sbjct 26405001 CCCAGTGCTGAATATCCTTGGAAAGGTCCACCTTCTCAGCAGTCCAAAAGGAGGCCTCAG 26405060 Query 5080 CTTTTTTGTACATAGACCAAATATCAGGATACTGAATCGGAA 5121 |||| |||||||| ||| |||||| | |||| ||| |||| Sbjct 26405061 CTTTCTTGTACATCTGCCAGATATCATGGTACTCAATGGGAA 26405102 >seq10 Length=113323912 Score = 100 bits (110), Expect = 2e-16 Identities = 93/118 (79%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 4809 GGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATA 4868 ||||||| ||| |||||||| || || || |||||||||||||| ||||| ||||| || Sbjct 23465335 GGGTCTTTAATGTAAGTGTCAATAAGGAGACTATACATTTCAGAGTGTATGTTTTCCATG 23465276 Query 4869 GCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATC 4926 ||||| || || || || || || | || ||||| ||||||||||| | | ||||| Sbjct 23465275 GCAATTTGGAAGCCATAGAAACAGCGGGCCTCTGTAACTTGAACTTCTTGGCTAAATC 23465218 Score = 96.9 bits (106), Expect = 3e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 || ||||||||||| || || || ||||| || | || ||||| | || | || || Sbjct 23466443 TCATCTCTGCTAATAAGCTCATTGGAAAATGTAAGGCCCGGCATCAGTCCCCGTTTCTTG 23466384 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 ||||| ||||| | ||||| || ||||||||||| || ||||||||||||||||| || Sbjct 23466383 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTACGGCGGCAAAGGCC 23466324 Query 4692 ACTAATCG 4699 || | ||| Sbjct 23466323 ACAACTCG 23466316 >seq21 Length=68186955 Score = 91.5 bits (100), Expect = 1e-13 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 4931 TACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATAT 4990 ||| |||||||| ||||| || || ||||||||||||||||| || || | || || || Sbjct 4938785 TACCAAGTTTTCATTTACAATTCCATCACTGGCTGCAAAAAAGGCTAAGATGTGGGAGAT 4938844 Query 4991 AAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAAC 5050 ||| |||| || |||| ||||| || |||||||| || | || || | ||| ||||| Sbjct 4938845 AAAATACTTCTCATCAGATTTAAGCTTGTTCCAGTGTGGGAGGTCCTTTGATAAGTCAAC 4938904 Score = 82.4 bits (90), Expect = 7e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 4252 CAAATTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAA 4311 ||||| || || || || ||||| || || |||||||| ||||| |||||||| |||| Sbjct 4922251 CAAATCGCTGATACTCAGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAAGGAAA 4922310 Query 4312 TATTTTCCATAAAATCAAACGGATT 4336 | || |||||||||||||| ||||| Sbjct 4922311 TGTTCTCCATAAAATCAAAGGGATT 4922335 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427036166754473