Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20pahari_20[refseq_20GCF_5F900095145.1_202017-04-28] 2,581 sequences; 2,475,012,951 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq1997 232 9e-56 seq9 205 1e-47 seq10 120 4e-22 seq1 114 2e-20 >seq1997 Length=85722 Score = 232 bits (256), Expect = 9e-56 Identities = 594/892 (67%), Gaps = 18/892 (2%) Strand=Plus/Plus Query 47835 GACATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCT 47894 ||||| ||||||| | | | | ||||| || | ||||| || || || || || ||| Sbjct 33352 GACATGGCTCCCATCCTCTTACACTCACCTACTCACTTCTCAAAGAAGTTTGTCTTTCCT 33411 Query 47895 TCCAATGATATATTTTCCATAAAATCAAATGGATTAACTGCATTAT--AAAtttttttAA 47952 || | ||| | ||||||| | | ||||||||||| | || | | |||| || |||| Sbjct 33412 TCTAGTGAAACATTTTCCTTGACGTCAAATGGATTTT-TCCACTCTGAAAATCTTGTTAA 33470 Query 47953 ATCCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCAC 48012 || | || |||| || || | | ||||| || || ||||||| | Sbjct 33471 GACCCAGCTCCAGTGTCAGCCTGTCAGTCAAAAATTCAATGTACTGCTTCATCAAAGTGC 33530 Query 48013 AATTCATTCCTATAAGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGA 48072 ||||| | || | || || || || | |||| ||| || |||||||| || || | | Sbjct 33531 AATTCGTCCCGAAGAGCTTCACAGGCAAGGCCTTCGTGAGGAACTCTTGCTCTATCCTAA 33590 Query 48073 CAGCATCCACTATTATCGATGTTACCGTTTCCTCACTTGG--TGGATACAACAAATGTTT 48130 | | | |||| | |||| ||| ||| ||| || ||| | || || Sbjct 33591 CCGTGTTGGTGTTTATTTCTTTTACTCTTTGCTCCAATGGCTTGTGTAC--CTGGTGCTT 33648 Query 48131 AAACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTA-CTAATTAATTCGTTAG 48189 ||||| | ||||| || || || | ||| || ||||| ||||| | || || | Sbjct 33649 GAACATCGGGCGGGCAAAGTCCCAGTGTAAACCCTCGTCTCTTGCTAATAAGCTCATTGG 33708 Query 48190 AAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAAT-ATTGCCGCGAAAGAT 48248 ||||||| || || ||||| || | || || |||||||| | | || | || ||||| Sbjct 33709 AAAATGTAAGGCCTGGCATCAGACTGCGATTCTTGAGCCAGAGTTATCGATGCAAAAGAA 33768 Query 48249 CCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCC---GTAACTG 48305 ||||||||||| || | ||| || ||||| | || || ||||| || | Sbjct 33769 CCAGAAAAGAAGATTCTTTCCACCATGGCAAAGACCACAACTCATTCTCCAATGTCCCCA 33828 Query 48306 GCT-TCGTTGTGT---ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCAT 48361 | || |||| ||||| | ||||| |||||||||||||| ||||||||||| Sbjct 33829 ATTCTCCTTGTCCCCAATCCAACACAAGGCCCAGTCAGCCTTCTTCTTCACACAAGGCAT 33888 Query 48362 TGTTTCTATAGCATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTAT 48421 ||||| |||||||| |||||| | | | |||| ||| |||||||| |||||| || || Sbjct 33889 TGTTTAAATAGCATTGAAGAGATATTCTCTTTCCTTGGGATCTTTAATGTAAGTGTCCAT 33948 Query 48422 TAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACA 48481 | ||||| |||||||| |||| | || || || || || || || || || ||||| Sbjct 33949 AAGGAGACTGTACATTTCAGAGTATACGTTCTCCATGGCAATTTGGAAGCCATAGAAACA 34008 Query 48482 TCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTAT 48541 | || ||||| | || || || | |||||| || |||| || ||||| ||||| Sbjct 34009 GCGGGCCTCTGTAACTTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTGACTAT 34068 Query 48542 TCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGT 48601 ||| |||| |||||||| || | || || |||| || | | || | || | Sbjct 34069 GCCACCACTCATTGCAAAAAA-GCCAGAACGTGAGATATAAGATGTCTCTCATCGGGTTT 34127 Query 48602 CAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGA 48661 | | | ||||||| | ||| | || || || || || || || || |||||||| || Sbjct 34128 CTGATCTTTCCAGTGTTGAATAGCCTTGGAAATGTCCACCTCCTCGGCAGTCCAAAAGGA 34187 Query 48662 TGCCTCTGCTTTTTTATACATATTCCATATATCACTGTATTGGATTGGGAAA 48713 | ||| ||||| || ||||| | || |||||| ||||| | ||||||| Sbjct 34188 GGTCTCAGCTTTCTTGTACATTTGCCTGATATCATGGTATT-CAATGGGAAA 34238 >seq9 Length=107150856 Score = 205 bits (226), Expect = 1e-47 Identities = 619/950 (65%), Gaps = 31/950 (3%) Strand=Plus/Plus Query 47795 TTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA----GACATAACTCCCATTT 47850 ||| |||||| |||| || | ||| ||| |||| | | ||| | |||| ||| Sbjct 26404177 TTAGAAGTCAGCATCCAAGGTGAAAGAATTCTCTTATCAAATTCGACCTGACTCTCATCC 26404236 Query 47851 TTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTT 47910 | || || || || | || ||||| || || || || || |||| | ||| ||||||| Sbjct 26404237 TCTGCTACTCGCCTCCTCGCTTCTCAAAGAAGTTTGTCTTTCCTTGTAGTGAAATATTTT 26404296 Query 47911 CCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAATTCTGAAATCA 47970 |||| || ||||||||||| || | | |||| || ||||| || | || || | Sbjct 26404297 CCATGAAGTCAAATGGATTTTCTACTCTGAAAATCTTATTAAAACCCAGCTCCAGCATAA 26404356 Query 47971 GTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAGTT 48030 | || || || || ||||| | || ||||||| ||||||| | || |||| Sbjct 26404357 GCCTGTCGGCCACAAATTCAAAGTACTGCTTCATCAAAGTGTAATTCATCCAGATGAGTT 26404416 Query 48031 TAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATTATCG 48090 | || || | |||| | || ||| | || || || | || | | | ||||| Sbjct 26404417 TCACAGGCAAGGCCTTGATGAGGAACGCCTGCTCTATCCTAACCACGTTGGCGATTATTT 26404476 Query 48091 ATGTTACCGTTTCCTCACTTGG--TGGATACAACAAATGTTTAAACATTAAACATGCAAA 48148 | || | | | || ||| || ||| || || || || || | || |||| Sbjct 26404477 CTTTTCCTCTCTGCTTTGATGGCTTGTGTAC--CAGGTGCTTGAAAATCAGGCAGACAAA 26404534 Query 48149 ATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGC-- 48206 || || | | ||| || ||||| ||||| | || || | |||||| || || ||| Sbjct 26404535 GTCCCAGTATAAACCCTCGTCTCTGCTAATAAGCTCATTGGGAAATGTAAGGCCTGGCTC 26404594 Query 48207 ATT----------AGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAA 48256 ||| ||||| ||||| |||||||| ||| | || || | |||||||| Sbjct 26404595 ATTGGAAAATGTAAGTCCCCGTTTCTTGAGCCAGAATGTCAGTGCAAATGGACCAGAAAA 26404654 Query 48257 GAATA--TGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTG 48314 || | | ||||||| | ||||| || || ||| | ||| | || | || Sbjct 26404655 AAAAAAATTGCTTCTACCTCGGCAAAGGCCACAACTCTTTGTCCCCAGT--GCATTGTCC 26404712 Query 48315 TGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCA 48374 |||| | ||||||||||| ||||| || ||||||||||||||| |||||| Sbjct 26404713 CCACTCCAAGGCAAGGCCCAATCAGCATTCTTTTT---ACAAGGCATTGTTTCAATAGCA 26404769 Query 48375 TTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATAC 48434 || |||||| | | | |||| ||| ||||||| |||||| || || | ||||| || Sbjct 26404770 TTGAAGAGATACTCTCTTTCTTTGGGGTCTTTAATGTAAGTGTCAATAAGGAGACTGTAT 26404829 Query 48435 ATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTG 48494 ||||| ||||| || ||||| || || || || || || || ||||| | | ||||| Sbjct 26404830 ATTTCAGAGTGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGTCTCTGTA 26404889 Query 48495 ATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCA 48554 | || || || | ||||| | |||| || ||| | ||||| ||||||| | Sbjct 26404890 ACTTGAACTTCTTGGCTGAATCGCT---CCAAGTTTTCACTGACTATGCCATCACACACT 26404946 Query 48555 GCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAG 48614 ||||| || || | || || |||||||| | | || ||| ||| | |||| Sbjct 26404947 GCAAAGAAAGCCAGAACGTGAGCAATAAAATGTCTCTC-ATGGGGTTCAAAGCTTCCCAG 26405005 Query 48615 TCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTT 48674 | | ||||| || || | || || | ||||| |||||||| || ||||| ||||| Sbjct 26405006 TGCTGAATATCCTTGGAAAGGTCCACCTTCTCAGCAGTCCAAAAGGAGGCCTCAGCTTTC 26405065 Query 48675 TTATACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAATCT 48724 || ||||| | ||| |||||| ||| | || || || | | |||| || Sbjct 26405066 TTGTACATCTGCCAGATATCATGGTACTCAATGGGAAAGACAGCAAAGCT 26405115 >seq10 Length=113323912 Score = 120 bits (132), Expect = 4e-22 Identities = 107/134 (80%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 |||||||| ||||| | || || |||||||| || || ||||| ||||| ||||| ||| Sbjct 23466443 TCATCTCTGCTAATAAGCTCATTGGAAAATGTAAGGCCCGGCATCAGTCCCCGTTTCTTG 23466384 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCG 48284 ||||| ||||| | || ||||| ||||||||||| || ||||||||||| ||||| || Sbjct 23466383 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTACGGCGGCAAAGGCC 23466324 Query 48285 GTAAGTCTCTCTCC 48298 || || |||||| Sbjct 23466323 ACAACTCGCTCTCC 23466310 >seq1 Length=172151128 Score = 114 bits (126), Expect = 2e-20 Identities = 105/133 (79%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 |||||||| || ||||| ||||| |||||||| || ||||||||||| || || | || Sbjct 73314772 TGAAATTCCCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGCTCAATGGAC 73314713 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246 ||||| || |||| ||| ||||| || |||||||| ||||| || || | | |||||| Sbjct 73314712 TCATTATTCCCCAGAATCTGAGCCGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAACTG 73314653 Query 77247 TTTCTGAGACCAT 77259 ||||| | ||||| Sbjct 73314652 TTTCTTATACCAT 73314640 Score = 105 bits (116), Expect = 9e-18 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 || || ||||| || | || || || ||||| |||||||| || ||||||||||| ||| Sbjct 73304315 GTGCCAGCATTGAAGAGAGTAGGGGAGGCATGAGTAAACCACTTCTCAGAAAGTAGGTTG 73304256 Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518 || |||||||| || | || || || | || |||||||| || | || | ||||| | Sbjct 73304255 TAGGTTTCAATTGCAGCATCAATATCTCCTTTGTGAATTCCCACAGAAACCCTCATCAGC 73304196 Query 78519 ATATGCTGAGGTCTTTCAACC 78539 |||||||| ||||||||| || Sbjct 73304195 ATATGCTGTGGTCTTTCAGCC 73304175 Score = 98.7 bits (108), Expect = 1e-15 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 77355 GATCCATTATATGTTTCATAAGGTCCTT-CTGTTTCAGCTAGTTCACAACTCGCTTCCAA 77413 ||||| | ||||||||| || || || || || ||||||||||| || ||||| | Sbjct 73311703 GATCCCTCATATGTTTCGTAGGGGCCACACTCCTTG-GCTAGTTCACAGCTGGCTTCTAG 73311645 Query 77414 TGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATC 77473 ||||| |||||||| ||||| || |||| |||||| | || ||||| || || Sbjct 73311644 GGCTCCATAATAAATGGTTTCAAAGATCTGCTTATTTAATAACTGGGCTTCTGGGCTCTC 73311585 Query 77474 AAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGG 77533 ||| ||||| | || || || ||||||||||| || || || ||||| ||||| || Sbjct 73311584 AAAGGGATATCTCATGAGGATGAAAGCATCTGCTAAACCTTGTACCCCAATTCCAATGGG 73311525 Query 77534 TCTATGTCTCTTATTGGA 77551 | ||| | ||||| || Sbjct 73311524 CCGATGGCGTTTATTTGA 73311507 Score = 98.7 bits (108), Expect = 1e-15 Identities = 101/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 76849 TCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATAT 76908 |||| |||||||| ||||| || || |||||| || | || || || |||||||| | Sbjct 73318266 TCCAACCGTAGAAGTGCATACTAGTGAGTTTGCCGTAGTTGGGCTCAGCAATATGAATGT 73318207 Query 76909 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 76968 | | ||||| ||||||||||||||||| ||||| || || ||||| || | || |||| Sbjct 73318206 TTAAAGACTGGCTTTGATCGATGAAAGCACCTCTCTCGGCTGCCATCTTGAGAACAGTCT 73318147 Query 76969 TTTGAGGAATTT 76980 | |||| |||| Sbjct 73318146 TCTGAGAGATTT 73318135 Score = 86.0 bits (94), Expect = 9e-12 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 76890 GGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCC 76949 || || || |||||||| || | ||||| ||||||||||||||||| ||||| || || Sbjct 73318121 GGCTCAGCAATATGAATGTTTAAAGACTGGCTTTGATCGATGAAAGCACCTCTCTCGGCT 73318062 Query 76950 GCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATA 77009 ||||| || | || ||||| |||| |||||||| | || || | | ||| || | Sbjct 73318061 GCCATCTTGAGAACAGTCTTCTGAGAGATTTCCCACACGGTCTTATAGAGTTGCTTCAGG 73318002 Query 77010 TCATCTGGAA 77019 ||||| |||| Sbjct 73318001 TCATCAGGAA 73317992 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694646388247840