Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20pahari_20[refseq_20GCF_5F900095145.1_202017-04-28] 2,581 sequences; 2,475,012,951 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq1997 239 6e-58 seq9 199 6e-46 seq1 118 2e-21 seq10 116 5e-21 seq21 102 1e-16 >seq1997 Length=85722 Score = 239 bits (264), Expect = 6e-58 Identities = 590/889 (66%), Gaps = 11/889 (1%) Strand=Plus/Plus Query 46323 TGACATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCC 46382 |||||| ||||||| | | | |||||||| | ||||| || || || || || || Sbjct 33351 TGACATGGCTCCCATCCTCTTACACTCACCTACTCACTTCTCAAAGAAGTTTGTCTTTCC 33410 Query 46383 TTCCAATGATATATTTTCCATAAAATCAAACGGATTAGTA-ACATTATAAAtttttttAA 46441 ||| | ||| | ||||||| | | ||||| ||||| | || | |||| || |||| Sbjct 33411 TTCTAGTGAAACATTTTCCTTGACGTCAAATGGATTTTTCCACTCTGAAAATCTTGTTAA 33470 Query 46442 ATCCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCAC 46501 || | || |||| || || | | ||||| || ||| ||||||| | Sbjct 33471 GACCCAGCTCCAGTGTCAGCCTGTCAGTCAAAAATTCAATGTACTGCTTCATCAAAGTGC 33530 Query 46502 AATTCATTCCTATGAGTTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGA 46561 ||||| | || | ||| || || || | |||| ||| || |||||||| || || | | Sbjct 33531 AATTCGTCCCGAAGAGCTTCACAGGCAAGGCCTTCGTGAGGAACTCTTGCTCTATCCTAA 33590 Query 46562 CAGCATCCGATATTATCGATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAA 46621 | | | | |||| | ||||| ||| ||| ||| || | | || || | Sbjct 33591 CCGTGTTGGTGTTTATTTCTTTTACTCTTTGCTCCAATGGCTTGTGTACCTGGTGCTTGA 33650 Query 46622 ACATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTA-CTAATTAATTCGTTAGAA 46680 |||| | ||||| || || || | || || ||||| ||||| | || || ||| Sbjct 33651 ACATCGGGCGGGCAAAGTCCCAGTGTAAACCCTCGTCTCTTGCTAATAAGCTCATTGGAA 33710 Query 46681 AATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAAT-ATAGCCGCGAAAGATCC 46739 ||||| || || ||||| || | || || |||||||| | | || | || ||||| || Sbjct 33711 AATGTAAGGCCTGGCATCAGACTGCGATTCTTGAGCCAGAGTTATCGATGCAAAAGAACC 33770 Query 46740 AGAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCC---GT----AAC 46792 ||||||||| || | ||| || || || | |||| || ||||| || || Sbjct 33771 AGAAAAGAAGATTCTTTCCACCATGGCAAAGACCACAACTCATTCTCCAATGTCCCCAAT 33830 Query 46793 TGGCATCATTATGAATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTG 46852 | | | | |||||| | ||||| |||||||| ||||| ||||||||||||| Sbjct 33831 TCTCCTTGTCCCCAATCCAACACAAGGCCCAGTCAGCCTTCTTCTTCACACAAGGCATTG 33890 Query 46853 TTTCTATAGCATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTA 46912 ||| |||||||| |||||| | | | |||| | |||||||| || || || || | Sbjct 33891 TTTAAATAGCATTGAAGAGATATTCTCTTTCCTTGGGATCTTTAATGTAAGTGTCCATAA 33950 Query 46913 AAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATC 46972 ||||| |||||||| || | | ||| || || || || || || || || ||||| | Sbjct 33951 GGAGACTGTACATTTCAGAGTATACGTTCTCCATGGCAATTTGGAAGCCATAGAAACAGC 34010 Query 46973 TTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTC 47032 || || |||| || || ||| | |||||| || ||| || ||||| ||||| | Sbjct 34011 GGGCCTCTGTAACTTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTGACTATGC 34070 Query 47033 CATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCA 47092 || |||| |||||||| |||| || || |||| || | | ||||||| || Sbjct 34071 CACCACTCATTGCAAAAAA-GCCAGAACGTGAGATATAAGATGTCTCTCATCGGGTTTCT 34129 Query 47093 GTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACG 47152 | | ||||||| | ||| | || || || || || || || || ||||| || || | Sbjct 34130 GATCTTTCCAGTGTTGAATAGCCTTGGAAATGTCCACCTCCTCGGCAGTCCAAAAGGAGG 34189 Query 47153 CCTCTGCTTTTTTATACATATTCCATATATCACGATATTGGATCGGAAA 47201 ||| ||||| || ||||| | || |||||| | |||| || ||||| Sbjct 34190 TCTCAGCTTTCTTGTACATTTGCCTGATATCATGGTATTCAATGGGAAA 34238 >seq9 Length=107150856 Score = 199 bits (220), Expect = 6e-46 Identities = 618/951 (65%), Gaps = 33/951 (3%) Strand=Plus/Plus Query 46284 TTAAAAGTCGACATCTAAAGAAAAATGATTATCTTCT----TGTGACATAACTCCCATTT 46339 ||| ||||| |||| || | ||| ||| |||| | | ||| | |||| ||| Sbjct 26404177 TTAGAAGTCAGCATCCAAGGTGAAAGAATTCTCTTATCAAATTCGACCTGACTCTCATCC 26404236 Query 46340 TTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTT 46399 | || || || ||| | || ||||| || || || || || |||| | ||| ||||||| Sbjct 26404237 TCTGCTACTCGCCTCCTCGCTTCTCAAAGAAGTTTGTCTTTCCTTGTAGTGAAATATTTT 26404296 Query 46400 CCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAATCA 46459 |||| || ||||| ||||| || | |||| || ||||| || | || || | Sbjct 26404297 CCATGAAGTCAAATGGATTTTCTACTCTGAAAATCTTATTAAAACCCAGCTCCAGCATAA 26404356 Query 46460 GTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAGTT 46519 | || || || || ||||| | ||| ||||||| ||||||| | ||||||| Sbjct 26404357 GCCTGTCGGCCACAAATTCAAAGTACTGCTTCATCAAAGTGTAATTCATCCAGATGAGTT 26404416 Query 46520 TGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTATCG 46579 | || || | |||| | || ||| | || || || | || | | | ||||| Sbjct 26404417 TCACAGGCAAGGCCTTGATGAGGAACGCCTGCTCTATCCTAACCACGTTGGCGATTATTT 26404476 Query 46580 ATGTTACTGTTTCCTCACTTGGTGGAT---GCATCAAATGTTTAAACATTAAACATGCAA 46636 | || || | | || ||| ||| | | | || || || || || | || ||| Sbjct 26404477 CTTTTCCTCTCTGCT---TTGATGGCTTGTGTACCAGGTGCTTGAAAATCAGGCAGACAA 26404533 Query 46637 AATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGC- 46695 | || || | | || || ||||| ||||| | || || | |||||| || || ||| Sbjct 26404534 AGTCCCAGTATAAACCCTCGTCTCTGCTAATAAGCTCATTGGGAAATGTAAGGCCTGGCT 26404593 Query 46696 -ATT----------AGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAA 46744 ||| ||||| || || |||||||| ||| | || || | ||||||| Sbjct 26404594 CATTGGAAAATGTAAGTCCCCGTTTCTTGAGCCAGAATGTCAGTGCAAATGGACCAGAAA 26404653 Query 46745 AGAATA--TGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATT 46802 | || | | ||||||| | || || || |||| ||| | ||| | |||| | Sbjct 26404654 AAAAAAAATTGCTTCTACCTCGGCAAAGGCCACAACTCTTTGTCCCCAGT--GCATTGTC 26404711 Query 46803 ATGAATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGC 46862 | |||| ||||||||||| || || || ||||||||||||||| ||||| Sbjct 26404712 CCCACTCCAAGGCAAGGCCCAATCAGCATTCTTTTT---ACAAGGCATTGTTTCAATAGC 26404768 Query 46863 ATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATA 46922 ||| |||||| | | | |||| | ||||||| || || || || | ||||| || Sbjct 26404769 ATTGAAGAGATACTCTCTTTCTTTGGGGTCTTTAATGTAAGTGTCAATAAGGAGACTGTA 26404828 Query 46923 CATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGT 46982 ||||| || || |||||||| || || || || || || || ||||| | | || || Sbjct 26404829 TATTTCAGAGTGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGTCTCTGT 26404888 Query 46983 AATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGC 47042 || || || ||| | ||||| || ||| || ||| | ||||| ||||||| | Sbjct 26404889 AACTTGAACTTCTTGGCTGAATCGCTC---CAAGTTTTCACTGACTATGCCATCACACAC 26404945 Query 47043 AGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCA 47102 ||||| || |||| || || |||||||| | | |||| || ||| | ||| Sbjct 26404946 TGCAAAGAAAGCCAGAACGTGAGCAATAAAATGTCTCTCAT-GGGGTTCAAAGCTTCCCA 26405004 Query 47103 GTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTT 47162 || | ||||| || || | || || | ||||| ||||| || || ||||| ||||| Sbjct 26405005 GTGCTGAATATCCTTGGAAAGGTCCACCTTCTCAGCAGTCCAAAAGGAGGCCTCAGCTTT 26405064 Query 47163 TTTATACATATTCCATATATCACGATATTGGATCGGAAAAATAACAAATCT 47213 || ||||| | ||| |||||| | || | || ||||| | | |||| || Sbjct 26405065 CTTGTACATCTGCCAGATATCATGGTACTCAATGGGAAAGACAGCAAAGCT 26405115 >seq1 Length=172151128 Score = 118 bits (130), Expect = 2e-21 Identities = 106/133 (80%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781 |||||||| || ||||| ||||| |||||||| || ||||||||||| || || | || Sbjct 73314772 TGAAATTCCCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGCTCAATGGAC 73314713 Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841 ||||| || |||| ||| ||||| ||||||||||| ||||| || || | | |||||| Sbjct 73314712 TCATTATTCCCCAGAATCTGAGCCGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAACTG 73314653 Query 75842 TTTCTGAGACCAT 75854 ||||| | ||||| Sbjct 73314652 TTTCTTATACCAT 73314640 Score = 113 bits (124), Expect = 6e-20 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 || || ||||| || | ||||| || |||||||| ||||| || ||||||||||| ||| Sbjct 73304315 GTGCCAGCATTGAAGAGAGTAGGGGAGGCATGAGTAAACCACTTCTCAGAAAGTAGGTTG 73304256 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 || |||||||| | || || ||||| | || |||||||| |||| || | ||||| | Sbjct 73304255 TAGGTTTCAATTGCAGCATCAATATCTCCTTTGTGAATTCCCACAGAAACCCTCATCAGC 73304196 Query 77114 ATATGCTGAGGTCGTTC 77130 |||||||| |||| ||| Sbjct 73304195 ATATGCTGTGGTCTTTC 73304179 Score = 98.7 bits (108), Expect = 1e-15 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 75950 GATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAAC 76009 ||||| | |||||||||||| | || || | |||||||| || || || |||| Sbjct 73311703 GATCCCTCATATGTTTCGTAGGGGCCACACTCCTTGGCTAGTTCACAGCTGGCTTCTAGG 73311644 Query 76010 GCACCGTAATAAATTGTTTCGAAAATCTTCTTA-TTAAGATCTTGCGCTTCAAGACTATC 76068 || || |||||||| ||||| || |||| |||| |||| | | || ||||| | || || Sbjct 73311643 GCTCCATAATAAATGGTTTCAAAGATCTGCTTATTTAATAAC-TGGGCTTCTGGGCTCTC 73311585 Query 76069 AAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGG 76128 ||| ||||| | || || || |||||||||| || || || ||||| ||||| || Sbjct 73311584 AAAGGGATATCTCATGAGGATGAAAGCATCTGCTAAACCTTGTACCCCAATTCCAATGGG 73311525 Query 76129 TCTATGTCTCTTATTGGA 76146 | ||| | ||||| || Sbjct 73311524 CCGATGGCGTTTATTTGA 73311507 Score = 98.7 bits (108), Expect = 1e-15 Identities = 101/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 75444 TCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATAT 75503 |||| |||||||| ||||| || || |||||| || | || || || |||||||| | Sbjct 73318266 TCCAACCGTAGAAGTGCATACTAGTGAGTTTGCCGTAGTTGGGCTCAGCAATATGAATGT 73318207 Query 75504 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 75563 | | ||||| ||||||||||||||||| ||||| || || ||||| || | || |||| Sbjct 73318206 TTAAAGACTGGCTTTGATCGATGAAAGCACCTCTCTCGGCTGCCATCTTGAGAACAGTCT 73318147 Query 75564 TTTGAGGAATTT 75575 | |||| |||| Sbjct 73318146 TCTGAGAGATTT 73318135 Score = 96.9 bits (106), Expect = 5e-15 Identities = 121/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 77339 CTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATT 77398 || || | ||| |||||||| ||||| || || || |||||||| || || || ||||| Sbjct 73299684 CTGAACACTTTCTTTGTTTCTTTGTGCAGGTTAGAGACGGCTATCCTTGCTGCCAGAATG 73299625 Query 77399 GCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTAAT 77458 ||||||||||| || | || || |||| || ||| | || || || | || || | | Sbjct 73299624 GCATAGTCAGGGTGCTTCGTGGTCAAGGTCGCGGCTGTCTCAGCAGCCAGGGTGTCCAGT 73299565 Query 77459 TCTATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 77504 || | || || || || |||| || ||||| || |||||||||| Sbjct 73299564 TCCACTGTGGTGACCCCACTATACAGGCCTTGGATTACTTTCATGG 73299519 Score = 86.0 bits (94), Expect = 9e-12 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 75485 GGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCC 75544 || || || |||||||| || | ||||| ||||||||||||||||| ||||| || || Sbjct 73318121 GGCTCAGCAATATGAATGTTTAAAGACTGGCTTTGATCGATGAAAGCACCTCTCTCGGCT 73318062 Query 75545 GCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATA 75604 ||||| || | || ||||| |||| |||||||| | || || | | ||| || | Sbjct 73318061 GCCATCTTGAGAACAGTCTTCTGAGAGATTTCCCACACGGTCTTATAGAGTTGCTTCAGG 73318002 Query 75605 TCATCTGGAA 75614 ||||| |||| Sbjct 73318001 TCATCAGGAA 73317992 >seq10 Length=113323912 Score = 116 bits (128), Expect = 5e-21 Identities = 106/134 (79%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 |||||||| ||||| | || || |||||||| || || ||||| ||||| || || ||| Sbjct 23466443 TCATCTCTGCTAATAAGCTCATTGGAAAATGTAAGGCCCGGCATCAGTCCCCGTTTCTTG 23466384 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 ||||| ||||| | || ||||| ||||||||||| || |||||||| || || || || Sbjct 23466383 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTACGGCGGCAAAGGCC 23466324 Query 46774 ACAAGTCTCTCTCC 46787 |||| || |||||| Sbjct 23466323 ACAACTCGCTCTCC 23466310 >seq21 Length=68186955 Score = 102 bits (112), Expect = 1e-16 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 46652 CTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTT 46711 ||||||| || || || | ||| || ||||| || || |||||||| || || | ||| | Sbjct 4933593 CTTCATCCCTGCTGATCAGTTCATTTGAAAAAGTCAGTCCAGGCATGAGGCCTCTCTTCT 4933652 Query 46712 TGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATG 46771 | ||||| ||||| || || || |||||||| ||||| || ||||||||||| || || | Sbjct 4933653 TTAGCCAGAATATCGCAGCAAATGATCCAGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 4933712 Query 46772 CGACAAGTCTCTCTCC 46787 | || | ||| || || Sbjct 4933713 CTACCACTCTTTCCCC 4933728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712911398953920