Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20pahari_20[refseq_20GCF_5F900095145.1_202017-04-28] 2,581 sequences; 2,475,012,951 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq9 132 1e-25 seq4 127 5e-24 seq17 123 6e-23 seq13 118 2e-21 seq1 87.8 4e-12 seq16 86.0 1e-11 >seq9 Length=107150856 Score = 132 bits (146), Expect = 1e-25 Identities = 152/203 (75%), Gaps = 6/203 (3%) Strand=Plus/Plus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCG 151967 || |||||||| ||||||||||| || | | || ||||| || || ||| ||| Sbjct 83841086 GTGGACTCTTTCTGGATGTTGTAGTCCGAGAGGGTGTGGCCATCCTCCAGCTGTTTGCCG 83841145 Query 151968 GCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTG 152027 ||||| || |||||||||||||| | | ||| |||||||| ||||| || || ||| Sbjct 83841146 GCGAATATCAGCCTCTGCTGGTCAGGTGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTG 83841205 Query 152028 ACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGA 152084 ||| |||| | | |||| ||| ||| || |||||||| || || |||||||| || Sbjct 83841206 ACATTCTCGATGGTGTC---ACTGGGCTCGACCTCAAGAGTGATGGTCTTGCCCGTCAGG 83841262 Query 152085 GTCTTCACGAAGACCTGCATTTT 152107 ||||||||||||| |||||| || Sbjct 83841263 GTCTTCACGAAGATCTGCATGTT 83841285 Score = 123 bits (136), Expect = 6e-23 Identities = 150/203 (74%), Gaps = 6/203 (3%) Strand=Plus/Plus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCG 151967 || |||||||| ||||||||||| || | | || ||||| || | ||| ||| Sbjct 80898474 GTGGACTCTTTCTGGATGTTGTAGTCCGAGAGGGTGTGGCCATCCTCCACCTGTTTGCCG 80898533 Query 151968 GCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTG 152027 || || || |||||||||||||| | | ||| |||||||| ||||| || || ||| Sbjct 80898534 GCAAATATCAGCCTCTGCTGGTCAGGTGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTG 80898593 Query 152028 ACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGA 152084 ||| |||| | | |||| ||| ||| || |||||||| || || |||||||| || Sbjct 80898594 ACATTCTCGATGGTGTC---ACTGGGCTCGACCTCAAGAGTGATGGTCTTGCCCGTCAGG 80898650 Query 152085 GTCTTCACGAAGACCTGCATTTT 152107 ||||||||||||| |||||| || Sbjct 80898651 GTCTTCACGAAGATCTGCATGTT 80898673 Score = 89.7 bits (98), Expect = 1e-12 Identities = 156/225 (69%), Gaps = 9/225 (4%) Strand=Plus/Plus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 ||||| | ||||||||||| |||||||| ||||| |||||| || | ||||| | Sbjct 72218615 AGTCTCAACACAAGATGAAGGGTAGACTCCTTTTGAGGGTTGTAGTCAGACAAAGTACAG 72218674 Query 151947 CCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTT 152004 |||||||| || ||||| || || ||||| | ||||||||| || | | | ||||| Sbjct 72218675 CCATCTTCCAGCTGCTTT--CCAGCAAAGATCAACCTCTGCTGATCAGGAGGAAGTCCTT 72218732 Query 152005 CCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAG 152064 |||| || || || || || ||| | |||| ||||||| ||| || | || Sbjct 72218733 CCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCTGAGGGCTCAACCTTGAGCA 72218792 Query 152065 TAATAGTTTT-----GCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || ||||| ||| | || | |||||| || | |||||| Sbjct 72218793 TGATGGTTTTCCCCAACCCCTAAGGGACTTCACAAAAATCTGCAT 72218837 >seq4 Length=164141553 Score = 127 bits (140), Expect = 5e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 ||||| | ||||||||||| |||||||| |||||||||||||| || | ||||| | Sbjct 18056552 AGTCTCAACACAAGATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCCGACAAAGTACGG 18056611 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 |||||||| || || || || ||||| | ||||||||| || | | ||||||||| Sbjct 18056612 CCATCTTCCAGCTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGGAGGAATTCCTTCC 18056671 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || || || || || || ||| | |||| |||| || || || || || || Sbjct 18056672 TTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTG 18056731 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| ||||| || |||||||| || | |||||| Sbjct 18056732 ATGGTTTTTCCCGTAAGGGTCTTCACAAAAATCTGCAT 18056769 Score = 127 bits (140), Expect = 5e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 ||||| | ||||||||||| |||||||| |||||||||||||| || | ||||| | Sbjct 99334565 AGTCTCAACACAAGATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCCGACAAAGTACGG 99334624 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 |||||||| || || || || ||||| | ||||||||| || | | ||||||||| Sbjct 99334625 CCATCTTCCAGCTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGGAGGAATTCCTTCC 99334684 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || || || || || || ||| | |||| |||| || || || || || || Sbjct 99334685 TTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTG 99334744 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| ||||| || |||||||| || | |||||| Sbjct 99334745 ATGGTTTTTCCCGTAAGGGTCTTCACAAAAATCTGCAT 99334782 Score = 104 bits (114), Expect = 5e-17 Identities = 159/224 (71%), Gaps = 7/224 (3%) Strand=Plus/Minus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 || || || || || || | || |||||||| ||||||||||| || | | || | Sbjct 128787403 AGACTCAGCACCAGTTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCCGACAGGGTGCAG 128787344 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 ||||| || | ||| || | | || || |||||| ||||||| | | ||| |||||| Sbjct 128787343 CCATCCTCCA-GCTGTTTGCCTCAAATATCAGCCTCAGCTGGTCAGGTGGGATGCCTTCC 128787285 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGA 152063 || ||||| || || |||||| |||| | | |||| ||| ||| || |||||| Sbjct 128787284 TTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTC---ACTGGGCTCAACCTCAAGA 128787228 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || || || |||||| | || ||||||| ||||| || ||| || Sbjct 128787227 GTGATGGTCTTGCCCATCAGGGTCTTCAGGAAGATCTACATGTT 128787184 Score = 100 bits (110), Expect = 7e-16 Identities = 131/180 (73%), Gaps = 6/180 (3%) Strand=Plus/Plus Query 151920 TGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGC 151979 ||| ||||||| || | | || | ||||| || || ||| | ||| || || ||| Sbjct 149231666 TGGGTGTTGTAGTCCGACAGGGTGCAGCCATCCTCCAGCTGTTTGCTGGCAAATATCAGC 149231725 Query 151980 CTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACG 152039 ||||||||||| | | ||| |||||||| ||||| || || |||||| |||| | | Sbjct 149231726 CTCTGCTGGTCAGGTGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATG 149231785 Query 152040 CTGTCTGAACT---CTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAG 152096 |||| ||| ||| || |||||||| || || |||||||| || |||||||||||| Sbjct 149231786 TTGTC---ACTGGGCTCGACCTCAAGAGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAG 149231842 Score = 91.5 bits (100), Expect = 3e-13 Identities = 144/205 (70%), Gaps = 6/205 (3%) Strand=Plus/Minus Query 151911 GACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCG 151970 |||||||| |||||||||||||| | | || | |||||||| || || || || Sbjct 104846262 GACTCTTTCTGGATGTTGTAATCAGAGAGGGTGCAGCCATCTTCCAGCTGCTTGCCAGCA 104846203 Query 151971 AAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACA 152030 ||||| | ||| |||||||| | | ||| || || || || || || || ||| || Sbjct 104846202 AAGATGAACCTTTGCTGGTCAGGGGGGATGCCCTCTTTATCCTGGATCTTGGCTTTCACG 104846143 Query 152031 GTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTC 152087 |||| | | |||| ||| ||| || || ||||| || |||||| || || ||| Sbjct 104846142 TTCTCGATGGTGTC---ACTGGGCTCCACCTCTAGAGTGATGGTTTTGTTGGTCAGGGTC 104846086 Query 152088 TTCACGAAGACCTGCATTTTACCCT 152112 ||| ||||| ||||||||| ||| Sbjct 104846085 TTCTTGAAGATTTGCATTTTAACCT 104846061 >seq17 Length=88915856 Score = 123 bits (136), Expect = 6e-23 Identities = 150/203 (74%), Gaps = 6/203 (3%) Strand=Plus/Plus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCG 151967 || |||||||| ||| |||||||||| | | || | ||||| || || ||| ||| Sbjct 64220014 GTGGACTCTTTCTGGGTGTTGTAATCAGACAGGGTGCAGCCATCCTCCAGCTGTTTGCCG 64220073 Query 151968 GCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTG 152027 || || || |||||||||||||| | | || |||||||| ||||| || || ||| Sbjct 64220074 GCAAATATCAGCCTCTGCTGGTCAGGTGGGAGGCCTTCCTTGTCTTGGATCTTGGCCTTG 64220133 Query 152028 ACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGA 152084 ||| |||| | | | || ||| ||||||||||||||| || || |||||| | || Sbjct 64220134 ACATTCTCGATGGTATC---ACTGGGCTCTACTTCAAGAGTGATGGTCTTGCCCATCAGG 64220190 Query 152085 GTCTTCACGAAGACCTGCATTTT 152107 |||||||| |||| |||||| || Sbjct 64220191 GTCTTCACAAAGATCTGCATGTT 64220213 >seq13 Length=116904986 Score = 118 bits (130), Expect = 2e-21 Identities = 151/205 (74%), Gaps = 10/205 (5%) Strand=Plus/Plus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAG--TTCTCCCATCTTCTAGGCTTTTCC 151965 || |||||||| ||||||||||| | || | || | | ||||| || || ||| | Sbjct 35782760 GTGGACTCTTTCTGGATGTTGTAGT--GCAACAGGGTGCGGCCATCCTCCAGCTCTTTGC 35782817 Query 151966 CGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTT 152025 ||| || || |||||||||||||| | | ||| |||||||| ||||| || || | Sbjct 35782818 TGGCAAATATCAGCCTCTGCTGGTCAGGTGGGATGCCTTCCTTGTCTTGGATCTTGGCCT 35782877 Query 152026 TGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATAGTTTTGCCCGTGA 152082 ||||| |||| | | |||| ||| ||| || |||||||| || || |||||||| | Sbjct 35782878 TGACATTCTCGATGGTGTC---ACTGGGCTCAACCTCAAGAGTGATGGTCTTGCCCGTCA 35782934 Query 152083 GAGTCTTCACGAAGACCTGCATTTT 152107 | |||||||| |||| |||||| || Sbjct 35782935 GGGTCTTCACAAAGATCTGCATGTT 35782959 >seq1 Length=172151128 Score = 87.8 bits (96), Expect = 4e-12 Identities = 144/208 (69%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||||||||| |||||||| ||||| |||||||| | ||||| | |||||||| | Sbjct 144045285 CAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAGAAAGACAAAGTACGGCCATCTTCCA 144045344 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || || || ||||| | ||||||| || | | ||||||||||| || || | Sbjct 144045345 GCTGCTTACCCGCAAAGATCAATCTCTGCTCATCAGGAGGAATTCCTTCCTTATCCTGGA 144045404 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || || ||| | |||| |||| || || || | || | || ||||| | Sbjct 144045405 TCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTTGAGCTTGATGGTTTTTC 144045464 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||| | |||||||| || | |||||| Sbjct 144045465 CCGTAAAGGTCTTCACAAAAATCTGCAT 144045492 >seq16 Length=96704406 Score = 86.0 bits (94), Expect = 1e-11 Identities = 147/211 (70%), Gaps = 3/211 (1%) Strand=Plus/Minus Query 151887 AGTCTGAGGACAAGA-TGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||||| | ||||| | ||| |||||||||||||| ||| |||| || | ||||| Sbjct 4426008 AGTCTCAACACAAGGCTAAAGGGTAGACTCTTTTTGAATGCTGTAGTCAGAGAAAGTATG 4425949 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 ||||||| || ||| || || ||||| ||||||||||| || | | |||| ||| Sbjct 4425948 GTCATCTTCCAGCTGTTTACCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCTTTC 4425889 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| || || | || || ||| | |||| |||| || || || || || || Sbjct 4425888 CTTATCCTGGGTCTTGGCCTTTACATTTTCTA--GTGTCCGAGGATTCAACCTCCAGTGT 4425831 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAG 152096 || ||||| ||||| | |||||||| ||| Sbjct 4425830 GATGGTTTTCCCCGTAAAGGTCTTCACAAAG 4425800 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153782644227851