Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20pahari_20[refseq_20GCF_5F900095145.1_202017-04-28] 2,581 sequences; 2,475,012,951 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq8 123 4e-23 seq4 98.7 1e-15 >seq8 Length=167013402 Score = 123 bits (136), Expect = 4e-23 Identities = 199/286 (70%), Gaps = 0/286 (0%) Strand=Plus/Minus Query 8300 AACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATC 8359 || ||||||||||| || || | |||| ||||||||||| | || | |||| |||| Sbjct 123226512 AAGGGACACCCCTTCACATTATTGCAGATGAGAGACTGAATTGAGGCAGTGTTGATGATC 123226453 Query 8360 CCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACG 8419 || ||||| || || || |||||||| ||||||||||| || || |||||| Sbjct 123226452 TTAAAACCCACTTCGCCTCCAAAGGTGCTCGGCTTCCAGTATTGAGGAGAACAGATGGGA 123226393 Query 8420 TTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAG 8479 || |||| || ||||| | |||||| || || || | || | ||| ||| || ||| Sbjct 123226392 TTTCCCATAAGTCCTTTCAAGGAGAATGGTGCTCCAAGTTCTACCATGAACTCCCCCAAG 123226333 Query 8480 ATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACG 8539 || || | | ||| | |||||||||| | | | ||||| |||| || || | | Sbjct 123226332 ATAGCATCTGAACGAGATTTTTCCACCAGCAGGGCAGGATACAGTTCCATGGCATCAATG 123226273 Query 8540 TCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 || | ||| ||||| | | || ||||| | ||||| ||||||| Sbjct 123226272 TCACTGTAGAGGGCTTTCAACTCTGCAGCCGTTTCCTTCTCTCCTG 123226227 Score = 98.7 bits (108), Expect = 1e-15 Identities = 113/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 9908 TCACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 9967 ||||| || || || | |||||||| || || | | || ||||| || ||| | | Sbjct 123222899 TCACCCTTCACACCCATGGGAGTTGGGCAGTCATCTGCTACTGGAGGAAGGGCCCTGGTG 123222840 Query 9968 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATG 10027 || ||||||||||||||||| |||||||||||| ||| | |||| | | ||||| | Sbjct 123222839 TAGTAGGAGAGATTGGAGAAGGCTTCCCAGCTTTTGTAACCATAGTGCACATTGTAAGTT 123222780 Query 10028 GGAGGGCTGTCAATCAAATCGGATCTACCTGA 10059 || || ||||||||||||| ||||| |||| Sbjct 123222779 GGTGGACTGTCAATCAAATGTGATCTGGCTGA 123222748 >seq4 Length=164141553 Score = 98.7 bits (108), Expect = 1e-15 Identities = 130/180 (72%), Gaps = 3/180 (2%) Strand=Plus/Minus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || || |||| |||||| |||||||||||||| || ||||| ||| ||| ||||| Sbjct 23557273 TCACCTATAAGGATGAGGCGAGTGGTCTGGAAGAGCTGCTCATCATCCCACGTGGGATGC 23557214 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 || | ||||| | |||||||| | ||| || || | |||||||| |||| | | | | Sbjct 23557213 TCCTCCTTCAGCAGGTCGCACACACGGTTATGCTCACGAAGCCAGATCGTGGAGAAGAGC 23557154 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGC 9411 || ||||| || | || ||||| |||| || || || |||| || ||||||||| Sbjct 23557153 ATCAGCCCCGGGAGCAACCCAAACACCTCCTGTCCCACGGCCATCTGC---TTTTCGGGC 23557097 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716853671762240