Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20pahari_20[refseq_20GCF_5F900095145.1_202017-04-28] 2,581 sequences; 2,475,012,951 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq4 140 8e-28 seq9 127 5e-24 seq17 104 6e-17 seq13 104 6e-17 >seq4 Length=164141553 Score = 140 bits (154), Expect = 8e-28 Identities = 158/209 (76%), Gaps = 7/209 (3%) Strand=Plus/Plus Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969 |||||||||||| |||| ||| ||| || || || ||||| ||||| || |||| Sbjct 104846061 AGGTTAAAATGC---AAATCTTCAAGAAGACCCTGACCAACAAAACCATCACTCTAGAGG 104846117 Query 177970 TGGAAAGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAAT 178027 |||| || ||| |||||||||||||||| ||| ||||| ||||| ||||| || || Sbjct 104846118 TGGA--GCCCAGTGACACCATCGAGAACGTGAAAGCCAAGATCCAGGATAAAGAGGGCAT 104846175 Query 178028 CCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCT 178087 ||| || ||||||||| | | ||||| || || || ||||| |||||||| | || || Sbjct 104846176 CCCCCCTGACCAGCAAAGGTTCATCTTTGCTGGCAAGCAGCTGGAAGATGGCTGCACCCT 104846235 Query 178088 TGCCGATTATAACGTCCAAAAAGAATCAA 178116 | ||||| ||| |||| ||||| |||| Sbjct 104846236 CTCTGATTACAACATCCAGAAAGAGTCAA 104846264 Score = 102 bits (112), Expect = 2e-16 Identities = 153/214 (71%), Gaps = 5/214 (2%) Strand=Plus/Plus Query 177927 ATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG--ACA 177984 || ||| |||| || || | || || || ||||| || ||||| || || ||| ||| Sbjct 128787193 ATCTTCCTGAAGACCCTGATGGGCAAGACCATCACTCTTGAGGTTGA--GCCCAGTGACA 128787250 Query 177985 CCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAAC 178044 |||||||||| ||||| ||||| || ||||| ||||| ||||| || ||||||| Sbjct 128787251 CCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCACCTGACCAGCTGA 128787310 Query 178045 GACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCC 178104 | || || || | || |||||||| || ||||| | || || | || || ||| ||| Sbjct 128787311 GGCTGATATTTG-AGGCAAACAGCTGGAGGATGGCTGCACCCTGTCGGACTACAACATCC 128787369 Query 178105 AAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 | ||||| || || |||| || || |||| || Sbjct 128787370 AGAAAGAGTCCACCTTGCAACTGGTGCTGAGTCT 128787403 >seq9 Length=107150856 Score = 127 bits (140), Expect = 5e-24 Identities = 154/208 (74%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || || || || || || ||||| || ||||| || || ||| Sbjct 83841279 CAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACTCTTGAGGTCGA--GCCCAGTG 83841222 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| ||||| ||||| || ||||| ||||| ||||| || ||||||| Sbjct 83841221 ACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCACCTGACCAGC 83841162 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || || |||||||| |||||||| || ||||| || || | || || ||| Sbjct 83841161 AGAGGCTGATATTCGCCGGCAAACAGCTGGAGGATGGCCACACCCTCTCGGACTACAACA 83841102 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| ||||| || || |||| || || Sbjct 83841101 TCCAGAAAGAGTCCACCTTGCACCTGGT 83841074 Score = 118 bits (130), Expect = 3e-21 Identities = 152/208 (73%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || || || || || || ||||| || ||||| || || ||| Sbjct 80898667 CAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACTCTTGAGGTCGA--GCCCAGTG 80898610 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| ||||| ||||| || ||||| ||||| ||||| || ||||||| Sbjct 80898609 ACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCACCTGACCAGC 80898550 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || || || ||||| |||||| | || ||||| || || | || || ||| Sbjct 80898549 AGAGGCTGATATTTGCCGGCAAACAGGTGGAGGATGGCCACACCCTCTCGGACTACAACA 80898490 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| ||||| || || |||| || || Sbjct 80898489 TCCAGAAAGAGTCCACCTTGCACCTGGT 80898462 >seq17 Length=88915856 Score = 104 bits (114), Expect = 6e-17 Identities = 149/208 (72%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || || | || || || ||||| || || || || || ||| Sbjct 64220207 CAGATCTTTGTGAAGACCCTGATGGGCAAGACCATCACTCTTGAAGTAGA--GCCCAGTG 64220150 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 | ||||||||||| ||||| ||||| || ||||| ||||| |||| || ||||||| Sbjct 64220149 ATACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCCTCCCACCTGACCAGC 64220090 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || || || ||||| |||||||| || ||||| | || || | ||||| ||| Sbjct 64220089 AGAGGCTGATATTTGCCGGCAAACAGCTGGAGGATGGCTGCACCCTGTCTGATTACAACA 64220030 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 ||| ||||| || || |||| || || Sbjct 64220029 CCCAGAAAGAGTCCACCTTGCACCTGGT 64220002 >seq13 Length=116904986 Score = 104 bits (114), Expect = 6e-17 Identities = 144/198 (73%), Gaps = 8/198 (4%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || || || || || || ||||| || ||||| || || ||| Sbjct 35782953 CAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACTCTTGAGGTTGA--GCCCAGTG 35782896 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| ||||| ||||| || ||||| ||||| ||||| || ||||||| Sbjct 35782895 ACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCACCTGACCAGC 35782836 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGA--CTCTTGCCGATTATAA 178099 | | || || || ||| | ||| |||| || ||||| | | || |||| | || || Sbjct 35782835 AGAGGCTGATATTTGCCAGCAAAGAGCTGGAGGATGGCCGCACCCTGTTGC--ACTACAA 35782778 Query 178100 CGTCCAAAAAGAATCAAC 178117 | |||| ||||| || || Sbjct 35782777 CATCCAGAAAGAGTCCAC 35782760 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203691393737714