Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20pahari_20[refseq_20GCF_5F900095145.1_202017-04-28] 2,581 sequences; 2,475,012,951 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq9 141 9e-29 seq13 105 6e-18 seq17 102 8e-17 seq28 89.7 5e-13 >seq9 Length=107150856 Score = 141 bits (156), Expect = 9e-29 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| ||||| | |||||| |||| ||| ||| ||||| ||||| ||||| || Sbjct 83841055 GCCACCGCGCAGACGCAGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCCGA 83841114 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||||||| | | || || ||||| ||||||||||||||||| | ||| ||||| | || Sbjct 83841115 GAGGGTGTGGCCATCCTCCAGCTGTTTGCCGGCGAATATCAGCCTCTGCTGGTCAGGTGG 83841174 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 | || |||||||| ||| || ||| | | | ||||| || | ||| || Sbjct 83841175 GATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGAC 83841234 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 ||| | || || || || |||||||| ||||| ||||| ||||||||||| Sbjct 83841235 CTCAAGAGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATGTT 83841285 Score = 132 bits (146), Expect = 4e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| ||||| | |||||| |||| ||| ||| ||||| ||||| ||||| || Sbjct 80898443 GCCACCGCGCAGACGCAGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCCGA 80898502 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||||||| | | || || | ||| |||||||| |||||||| | ||| ||||| | || Sbjct 80898503 GAGGGTGTGGCCATCCTCCACCTGTTTGCCGGCAAATATCAGCCTCTGCTGGTCAGGTGG 80898562 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 | || |||||||| ||| || ||| | | | ||||| || | ||| || Sbjct 80898563 GATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGAC 80898622 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 ||| | || || || || |||||||| ||||| ||||| ||||||||||| Sbjct 80898623 CTCAAGAGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATGTT 80898673 >seq13 Length=116904986 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| |||| | |||||| | || ||| ||| ||||| ||||| |||| | Sbjct 35782729 GCCACCGCGCAGACACAGCACCAGGTACAAGGTGGACTCTTTCTGGATGTTGTAGTGCAA 35782788 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 |||||||| | || || |||| |||| ||| |||||||| | ||| ||||| | || Sbjct 35782789 CAGGGTGCGGCCATCCTCCAGCTCTTTGCTGGCAAATATCAGCCTCTGCTGGTCAGGTGG 35782848 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 | || |||||||| ||| || ||| | | | ||||| || | ||| || Sbjct 35782849 GATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCAAC 35782908 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 ||| | || || || || |||||||| ||||| || || ||||||||||| Sbjct 35782909 CTCAAGAGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATGTT 35782959 >seq17 Length=88915856 Score = 102 bits (112), Expect = 8e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | |||||| |||| ||| ||| ||||| |||| || || || Sbjct 64219983 GCCACCCCGCAGACGCAGCACCAGGTGCAAGGTGGACTCTTTCTGGGTGTTGTAATCAGA 64220042 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||||||| | || || ||||| |||||||| |||||||| | ||| ||||| | || Sbjct 64220043 CAGGGTGCAGCCATCCTCCAGCTGTTTGCCGGCAAATATCAGCCTCTGCTGGTCAGGTGG 64220102 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 | || |||||||| ||| || ||| | | | || || || | ||| || Sbjct 64220103 GAGGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTATCACTGGGCTCTAC 64220162 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || | || || || || ||| |||| ||||| || || ||||||||||| Sbjct 64220163 TTCAAGAGTGATGGTCTTGCCCATCAGGGTCTTCACAAAGATCTGCATGTT 64220213 >seq28 Length=148379591 Score = 89.7 bits (98), Expect = 5e-13 Identities = 137/194 (71%), Gaps = 1/194 (1%) Strand=Plus/Plus Query 41672 TCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 41731 || ||||| ||||| || || |||||||||| | || || || |||||||| || || Sbjct 9098657 TCTTTCTGGATGTTGTAATCAGAGAGGGTGCTGCCATCTTCCAGATGCTTGCCTGCAAA- 9098715 Query 41732 ATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGAC 41791 || || | || || || | ||||| | ||| || ||| ||| || ||||| | | Sbjct 9098716 ATGAGCCTCTACTGATCAGGGGGAATGTACTCTTTATCCTGGATCTTGGCCTTCACGGTC 9098775 Query 41792 GACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACG 41851 | |||||| || | ||||||||||| || || || || || ||||| ||||| || Sbjct 9098776 TCGATAGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACA 9098835 Query 41852 AAAATCTGCATGTT 41865 || || ||||| || Sbjct 9098836 AAGATGTGCATTTT 9098849 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462289084917200