Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26] 5,404 sequences; 2,625,587,472 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq17 172 6e-38 seq4 87.8 2e-12 >seq17 Length=136257712 Score = 172 bits (190), Expect = 6e-38 Identities = 401/604 (66%), Gaps = 17/604 (3%) Strand=Plus/Plus Query 16946 AGATGTTTAAACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGT 17005 || || || |||||||| || || | || || ||||| |||||||||||||| |||| Sbjct 93987684 AGGTGCTTGAACATCAGCCAGGCAGAGTCCCAGTGTAAACCCTCGTCTCTGCTAATAAAC 93987743 Query 17006 TCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCG 17065 || || |||| ||| | || |||| || || ||||| | ||| ||||||| || Sbjct 93987744 TCATTGGAAAGTGTAAGGCCCAACATCAGTCTGCGATTCTTGAGCCAGAATATCGATGC- 93987802 Query 17066 AACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTAC 17125 |||||| | || || || | ||||| || | | || ||| | || Sbjct 93987803 -----------AAAGAAGACTCCTTCCACCGCAGCAAAGGCCACAACTCATTCTCCATAT 93987851 Query 17126 GTCGCGTCTTTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATG---CAA 17182 | | ||||||| | | |||| | |||| || || || | ||| | ||| Sbjct 93987852 GAGGACTCTTTGTCCCCAGTCCAACGCAAGGCCCAGTCAGCCTTCTTCTTCTTCACACAA 93987911 Query 17183 TCCATCGTTTCTATGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTA 17242 ||| |||| || || || || | | ||| |||||| | || | || ||||| Sbjct 93987912 GGCATTGTTTAAATAGCATTGAAGAGATATTCTCTTTCCTTGGGATCTTTAATGTACGTG 93987971 Query 17243 TCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAA 17302 || || || | ||||||||||| ||||||||||| |||||||| | || || || || Sbjct 93987972 TCAATAAGGGGACTGTACATTTCAGAGTGTATGTTTTCCATGGCAGTTTGGAAGCCATAG 93988031 Query 17303 AAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTC 17362 || || ||||| || | | ||||||||| | ||||| ||| | | ||||| || Sbjct 93988032 AAACAGCGGGCCTCTGTAACTTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTG 93988091 Query 17363 ACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCC 17422 || ||||| || ||||| || || || |||| || || || |||| | | || ||| Sbjct 93988092 ACTATGCCATCACTCGCTGCAAAGAAAGCCAGAATGTGAGCTATAAAATGTCTCTCATCC 93988151 Query 17423 GGTGTAAGAACGCGCCAGTCCTTTAAATCTTTGGATATATCCA-CTTCTTCGGGGGTCCA 17481 || | ||| | ||||| | | | | ||||| | |||| |||||| || ||||| Sbjct 93988152 AGTTTCAGAGCTTCCCAGTGTTGAATACCCTTGGAAAGGTCCACCTTCTT-GGCAGTCCA 93988210 Query 17482 AAAACTAGCCACTGCCTTTTTATACATATTCCAAATATCATTGTATTGTATGGGGAATAC 17541 ||| ||| | || || || ||||| | ||| ||||||| ||||| ||||| || || Sbjct 93988211 AAAGGAGGCCTCAGCTTTCTTGTACATCTGCCAGATATCATGGTATTCAATGGGAAAGAC 93988270 Query 17542 AACA 17545 |||| Sbjct 93988271 AACA 93988274 >seq4 Length=114123490 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045 ||||||||||||| ||||| || || |||||||| | || |||||| || ||||||| Sbjct 16582949 CCTCGTCTCTGCTAATAAGCTCATTGGAAAATGTAAGGCCCGGCATCAGCCCCCGTTTCT 16582890 Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACG 17105 | | ||| ||||| | || || || || |||||||| || || || |||| ||||| | Sbjct 16582889 TGAGCCAGAATATTGATGCAAAAGAACCGGAAAAGAAGATTCCTTCTACGGCGGCAAAGG 16582830 Query 17106 C 17106 | Sbjct 16582829 C 16582829 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517510639794720