Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26] 5,404 sequences; 2,625,587,472 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq3385 336 2e-87 seq17 183 3e-41 seq14 167 2e-36 seq7 98.7 1e-15 seq4 86.0 6e-12 >seq3385 Length=62036 Score = 336 bits (372), Expect = 2e-87 Identities = 610/880 (69%), Gaps = 23/880 (3%) Strand=Plus/Minus Query 15910 TCTTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATT 15969 ||| || || ||| ||| ||||| || ||||| || ||||| || ||||| || || || Sbjct 20951 TCTCTGATACTCAGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAATGAAATGTT 20892 Query 15970 TTCCATAAAATCAAAGGGATTAGTAGC-TGAAAATATCTTAGAGTACCCCAGTTCCGTAA 16028 |||||||||||||||||||| || |||||| ||||| ||| | || ||||| ||| Sbjct 20891 CTCCATAAAATCAAAGGGATTTTCTGCCTGAAAA-ATCTTTGAGAATCCAAGTTCTATAA 20833 Query 16029 CTAATCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTATAA 16088 |||||| || |||||||| || || || || | | || | | |||||||| || | Sbjct 20832 GTAATCTGTCAGCTACAAACTCAATGTACTGTTTCGTCAAAACATAGTTAATTCCAATGA 20773 Query 16089 GTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGA 16148 | | || || | |||| ||||||||| | || || || ||| || || ||||| Sbjct 20772 GGCCAACAGGCAAGGCTTCTGTTAAAAACTCCTGCTCAATTTGAACAGCATCAGCAATGA 20713 Query 16149 TATCGGTGGCTCGTGT-TTCAGACGGTGTATGGTTTAGGTGTTTAAACATTAGACACGCG 16207 | || | ||| ||| ||| || || | || | |||||| || || || Sbjct 20712 TTTCCCTCACTC-TGTCTTCTGAAGGCTT---------GTACTGAAACATCAGGCAGGCA 20663 Query 16208 AAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGC 16267 ||||| || || || ||||| || |||||||| ||||| || |||||||| | | ||| Sbjct 20662 AAGTCACAGTGAAGACCTTCATCCCTGCTGATCAGTTCATTTGAAAAAGTCAGTTCAGGC 20603 Query 16268 ATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCC 16327 || |||| ||||||| ||||||||| ||||||||||| || || ||| | || || Sbjct 20602 ATGAGGCCTCTCTTCTTTAGCCAGAATATTGCAGCAAATGATCCAGAGAAGGAAATTCCT 20543 Query 16328 TCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCAT 16387 || |||| ||||| || | | || |||| | | |||| | ||| ||||| Sbjct 20542 TCCACAGCAGCAAAGGCCACCACTCTTTCCCCAAAAGTAGATTTCCTATCTGCTATCCAG 20483 Query 16388 TTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAACAAT 16447 | | |||| || ||||||| || | | | ||| ||||| || || ||||| || Sbjct 20482 CGCAGAGCCCAGTCCGCTTTTTTCTTAACATATGGCATTGTTTCAATTGCGTTAAATAAA 20423 Query 16448 --TTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACATTTCTG 16505 ||| ||||| || || || | || || || || || |||||||||||||| |||| Sbjct 20422 AATTCCCTTTTCTTTGGATCTC--TGATGTAAGTGTCTATTAGTAAACTGTACATCTCTG 20365 Query 16506 AGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTA 16565 |||| | ||||| ||| |||||||| ||||||||||| ||| ||||| | || | Sbjct 20364 AGTGAACATTCTCGATGAGAATCTGAAAGCCATAGAAGCAGTGAGTCTCCGGAACCTGCA 20305 Query 16566 CTTCC--ACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAA 16623 | ||| || ||||| || ||| ||| ||| ||||| || || || ||||| || ||||| Sbjct 20304 CCTCCTGAC-TAAAA-CGCTCCACCAAGTTTTCATTTACAATTCCATCACTGGCTGCAAA 20247 Query 16624 AAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATGCCAATCTTT 16683 ||| || || ||||| || || || || ||||| ||| |||| | | ||| | Sbjct 20246 AAAGGCTAAGATGTGGGAGATAAAGTACTTCTCGTCGGATTTAAGCTTGTTCCAGTGAGG 20187 Query 16684 TAAATCTTTGGATATATCCACTTCTTCTGGCGTCCA-AAAGCTAGCCACTGCCTTTTTAT 16742 | || || || | || || |||||| ||||| |||| | ||| ||| | |||| Sbjct 20186 GAGGTCCTTTGACAAGTCAACCTCTTCTTCTGTCCAGAAAGAT-GCCCGTGCTTGCTTAT 20128 Query 16743 ACATTTTCCAAATATCATTGTATTGTATGGGAAATACGAC 16782 ||||| |||| |||||| || || || ||||| | ||| Sbjct 20127 ACATTCTCCAGATATCAGGATACTGGATTGGAAAGATGAC 20088 Score = 168 bits (186), Expect = 7e-37 Identities = 273/389 (70%), Gaps = 13/389 (3%) Strand=Plus/Minus Query 15910 TCTTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATT 15969 ||| || || ||| ||| ||||| || ||||| || ||||| || ||||| || || || Sbjct 21493 TCTCTGATACTCAGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAATGAAATGTT 21434 Query 15970 TTCCATAAAATCAAAGGGA-TTAGTAGCTGAAAATATCTTAGAGTACCCCAGTTCCGTAA 16028 |||||||||||||||||| || | ||||||| ||||| ||| | || ||||| ||| Sbjct 21433 CTCCATAAAATCAAAGGGATTTTCTGCCTGAAAA-ATCTTTGAGAATCCAAGTTCTATAA 21375 Query 16029 CTAATCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTATAA 16088 |||||| || |||||||| || || || || | | || | | |||||||| || | Sbjct 21374 GTAATCTGTCAGCTACAAACTCAATGTACTGTTTCGTCAAAACATAGTTAATTCCAATGA 21315 Query 16089 GTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGA 16148 | | || || | |||| ||||||||| | || || || ||| || || ||||| Sbjct 21314 GGCCAACAGGCAAGGCTTCTGTTAAAAACTCCTGCTCAATTTGAACAGCATCAGCAATGA 21255 Query 16149 TATCGGTGGCTCGTGT-TTCAGACGGTGTATGGTTTAGGTGTTTAAACATTAGACACGCG 16207 | || | ||| ||| ||| || || | || | |||||| || || || Sbjct 21254 TTTCCCTCACTC-TGTCTTCTGAAGGCTT---------GTACTGAAACATCAGGCAGGCA 21205 Query 16208 AAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGC 16267 ||||| || || || ||||| || |||||||| ||||| || |||||||| | | ||| Sbjct 21204 AAGTCACAGTGAAGACCTTCATCCCTGCTGATCAGTTCATTTGAAAAAGTCAGTTCAGGC 21145 Query 16268 ATTTTTCCTCGTTTCTTTAACCAGAATAT 16296 || |||| ||||||| ||||||||| Sbjct 21144 ATGAGGCCTCTCTTCTTTAGCCAGAATAT 21116 >seq17 Length=136257712 Score = 183 bits (202), Expect = 3e-41 Identities = 406/604 (67%), Gaps = 19/604 (3%) Strand=Plus/Plus Query 16184 AGGTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGT 16243 ||||| || ||||| || || || |||| || |||| || ||||||||||| |||| Sbjct 93987684 AGGTGCTTGAACATCAGCCAGGCAGAGTCCCAGTGTAAACCCTCGTCTCTGCTAATAAAC 93987743 Query 16244 TCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA 16303 || ||||||| || | || ||| || || ||||| | ||||||||||| ||| Sbjct 93987744 TCATTGGAAAGTGTAAGGCCCAACATCAGTCTGCGATTCTTGAGCCAGAATATCGATGCA 93987803 Query 16304 AATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTAC 16363 || |||| | || || || | ||||| || | | || ||| | || Sbjct 93987804 AAG---------AAGACT---CCTTCCACCGCAGCAAAGGCCACAACTCATTCTCCATAT 93987851 Query 16364 GTAGCATCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTT-TTGTTTT--ATACAA 16420 | | ||||| | | | |||| | |||| || || || || || | | |||| Sbjct 93987852 GAGGACTCTTTGTCCCCAGTCCAACGCAAGGCCCAGTCAGCCTTCTTCTTCTTCACACAA 93987911 Query 16421 TCCATCGTTTCTATGGCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTA 16480 ||| |||| || || || || | | ||| |||||| ||| | || ||||| Sbjct 93987912 GGCATTGTTTAAATAGCATTGAAGAGATATTCTCTTTCCTTGGGATCTTTAATGTACGTG 93987971 Query 16481 TCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAG 16540 ||||| || |||||||||||| ||||||||||| || ||||| | || || |||||| Sbjct 93987972 TCAATAAGGGGACTGTACATTTCAGAGTGTATGTTTTCCATGGCAGTTTGGAAGCCATAG 93988031 Query 16541 AAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTC 16600 || || || ||||| | | ||| ||||| | |||||| ||| ||| ||| ||||| Sbjct 93988032 AAACAGCGGGCCTCTGTAACTTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTG 93988091 Query 16601 ACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCA 16660 || || || ||||| || ||||| || |||| ||||| || |||| | | || || Sbjct 93988092 ACTATGCCATCACTCGCTGCAAAGAAAGCCAGAATGTGAGCTATAAAATGTCTCTCATCC 93988151 Query 16661 GATGTAAGAATATGCCAATCTTTTAAATCTTTGGATATATCCA-CTTCTTCTGGC-GTCC 16718 | | ||| | ||| | || | | | ||||| | |||| ||||| |||| |||| Sbjct 93988152 AGTTTCAGAGCTTCCCAGTGTTGAATACCCTTGGAAAGGTCCACCTTCT--TGGCAGTCC 93988209 Query 16719 AAAAGCTAGCCACTGCCTTTTTATACATTTTCCAAATATCATTGTATTGTATGGGAAATA 16778 ||||| ||| | || || || ||||| | ||| ||||||| ||||| |||||||| | Sbjct 93988210 AAAAGGAGGCCTCAGCTTTCTTGTACATCTGCCAGATATCATGGTATTCAATGGGAAAGA 93988269 Query 16779 CGAC 16782 | || Sbjct 93988270 CAAC 93988273 >seq14 Length=152946536 Score = 167 bits (184), Expect = 2e-36 Identities = 576/884 (65%), Gaps = 26/884 (3%) Strand=Plus/Plus Query 15902 ACACCCATTCTTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAA 15961 || ||||| | || || || | || || || || |||||||| || ||||| ||||| Sbjct 69609731 ACGCCCATCCACTGATACTCGCCTACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAAT 69609790 Query 15962 GATATATTTTCCATAAAATCAAAGGGATTAGTAGCT--GAAAATATCTTAGAGTACCCCA 16019 || ||||||||||| || ||||| ||||| || ||||| ||||| | |||| Sbjct 69609791 GAAATATTTTCCATGAAGTCAAATGGATTTCCTACTCCGAAAA-ATCTTGTTAAAACCCA 69609849 Query 16020 GTTCCGTAACTAATCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAA 16079 | ||| | | ||||| || |||||||| || || || ||| || ||| || | Sbjct 69609850 GCTCCAGCATAAGCCTATCGGCCACAAATTCAATGTACTGCTTCATCAAAGTGCAGTTCA 69609909 Query 16080 TTCCTATAAGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCAC-AACCGCT 16138 | | || || || || | || | | | | || |||||| | |||| | Sbjct 69609910 TCTCGATGAGCATCACAGGCAAGGCCTCCATGAGGATCCCCTGCTCTATCCCTAACCTCG 69609969 Query 16139 TCTTTAATGATATCGGTGGCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATT 16198 | | || || || | ||| || ||| || || | || ||||| || ||||| Sbjct 69609970 TTGGTGATTATTTCTTTTACTC-TGCTTC-GATGGCTTGTGTACCAGGTGCTTGAACATC 69610027 Query 16199 AGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTT 16258 || | | ||||| || |||| || | ||||||||| ||||| || |||||||| || Sbjct 69610028 AGGTAGACAAAGTCCCAGTGTAAACCCTAGTCTCTGCTAATAAGCTCATTGGAAAATGTA 69610087 Query 16259 AACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCG-AAAA 16317 || ||||| || ||||||| | ||||||||||| ||||| || || | |||| Sbjct 69610088 GGGCCCGGCATCAGCCCCTGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAA 69610147 Query 16318 GAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATT 16377 ||| || | || || | ||||| || | | |||||| || || ||| | ||||| | Sbjct 69610148 GAAGATTGCTTCTACCGTGGCAAAGGCCACAACTCGTTCTGCATATGTAACTTCTTTGTC 69610207 Query 16378 ACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGC 16437 | | |||| | | |||| || || || | || | ||| ||||| || || Sbjct 69610208 CCCAGTCCAATGCAAGGCCCAGTCAGCCTTCT------CAC-AGGCATTGTTTCAATAGC 69610260 Query 16438 CTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTA 16497 || || | | ||| |||| | ||| | || || | ||||| || | |||||| Sbjct 69610261 ATTGAAAAGATATTCTCTTTCTTTGGGATCTTTAATGTAAATGTCAATAAGGAGACTGTA 69610320 Query 16498 CATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGC 16557 ||||| |||||||| | || || | | | || ||||| || |||| |||||| | Sbjct 69610321 CATTTTAGAGTGTATCCTTTCCCTGCCAGTTTAGAAGCCATA-AAACATCCAGCCTCTGT 69610379 Query 16558 TATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGC 16617 | ||| ||||| | |||||| ||| ||| ||| | || | || || ||||| || Sbjct 69610380 AACTTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTGCGTTGAGTATGCCATCACTCGC 69610439 Query 16618 AGCAAAAAACGCC--AATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATGC 16675 ||||| || ||| || ||| ||| || ||| ||| |||| | ||| | | Sbjct 69610440 TGCAAAGAAAGCCAGAACATGAGCT--ATAAAA---TTTCTGTCA---TTCAGAGCTTCC 69610491 Query 16676 CAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCC 16735 || | | | || ||||| | ||||| || || ||||||||| | ||| | || Sbjct 69610492 CAGT-GCTGATCTCCTTGGAAAGGTCCACCTCCTCATCAGTCCAAAAGGTGGCCTCAGCT 69610550 Query 16736 TTTTTATACATTTTCCAAATATCATTGTATTGTATGGGAAATAC 16779 || || ||||| | ||| ||||||| ||| | |||||||| || Sbjct 69610551 TTCTTGTACATCTGCCAGATATCATGGTACTAGATGGGAAAGAC 69610594 >seq7 Length=104786220 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 16224 CTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCT 16283 |||| || |||||||| ||||| || |||||||| | || ||||| |||| |||| Sbjct 35873929 CTTCATCCCTGCTGATCAGTTCATTTGAAAAAGTCAGTCCAGGCATGAGGCCTCTCTTCT 35873988 Query 16284 TTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAG 16343 ||| ||||||||| ||||||||||| || || ||||| || || || |||| ||||| | Sbjct 35873989 TTAGCCAGAATATTGCAGCAAATGATCCAGAGAAGAAAATTCCTTCCACAGCAGCAAAGG 35874048 Query 16344 CGATTAATCGTTCC 16357 | | | || |||| Sbjct 35874049 CCACCACTCTTTCC 35874062 Score = 82.4 bits (90), Expect = 8e-11 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 16472 ATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGA 16531 || || || || || |||||||||||||| |||||||| | ||||| ||| |||||| Sbjct 35883002 ATGTAAGTGTCTATTAGTAAACTGTACATCTCTGAGTGAACATTCTCGATGAGAATCTGA 35883061 Query 16532 AATCCATAGAAGCATCGAGCCTC 16554 || ||||||||||| |||||||| Sbjct 35883062 AAGCCATAGAAGCAGCGAGCCTC 35883084 >seq4 Length=114123490 Score = 86.0 bits (94), Expect = 6e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 16472 ATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGA 16531 || || || ||||| || | |||||||||||| ||||||||||| || ||||| || || Sbjct 16581636 ATGTAAGTGTCAATAAGGAGACTGTACATTTCAGAGTGTATGTTTTCCATGGCAATTTGG 16581577 Query 16532 AATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCC 16588 || |||||||| || || ||||| | | ||| ||||| | |||||| ||| || Sbjct 16581576 AAGCCATAGAAACAGCGGGCCTCTGTAACTTGAACTTCTTGGCTAAATCGCTCCACC 16581520 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285 ||||||||||| ||||| || |||||||| || | || ||||| || |||||||| Sbjct 16582947 TCGTCTCTGCTAATAAGCTCATTGGAAAATGTAAGGCCCGGCATCAGCCCCCGTTTCTTG 16582888 Query 16286 AACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGC 16344 | ||||||||| | ||||| || || |||||||| || || || || | ||||| || Sbjct 16582887 AGCCAGAATATTGATGCAAAAGAACCGGAAAAGAAGATTCCTTCTACGGCGGCAAAGGC 16582829 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511379853957280