Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26] 5,404 sequences; 2,625,587,472 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq18 309 2e-79 seq15 96.9 3e-15 >seq18 Length=130317789 Score = 309 bits (342), Expect = 2e-79 Identities = 531/768 (69%), Gaps = 2/768 (0%) Strand=Plus/Plus Query 18579 TTTGGAATGCAAGCTCGATACAATTTGCGAAATGAATTTCCTCTTTTAACTACAAAGCGT 18638 || || ||||| || ||||||| || || ||||||||||||| | || || || || Sbjct 85150912 TTCGGCATGCAGGCACGATACAGCCTGAGAGATGAATTTCCTCTGCTCACAACCAAACGA 85150971 Query 18639 GTTTTTTGGAGGGCCGTCGTGGAAGAGTTGTTATGGTTTATCCGCGGGTCAACCGATTCC 18698 || || |||| || || |||| |||||||| ||||||||| || || || || | Sbjct 85150972 GTGTTCTGGAAGGGTGTTTTGGAGGAGTTGTTGTGGTTTATCAAGGGATCCACAAATGCT 85151031 Query 18699 AAAGAACTCGCCGCTAAAGATATACACATATGGGATATATACGGATCGAGCAAATTTCTA 18758 |||||| | || | || | | || |||||| | ||||| | | ||||| Sbjct 85151032 AAAGAATTGTCCTCCAAGGGAGTGAGAATCTGGGATGCCAATGGATCCCGAGACTTTCTG 85151091 Query 18759 AATAGGAATGGCTTCCATAAAAGACACACGGGGGACCTTGGCCCCATTTACGGCTTCCAG 18818 | || || || | |||| | |||||||| ||||| |||| || ||||| Sbjct 85151092 GACAGCTTGGGATTTTCTGCCCGACAGAAAGGGGACCTGGGCCCAGTTTATGGTTTCCAA 85151151 Query 18819 TGGAGACATTTTGGAGCGGAATATAAAGACTGTCAATCAAACTATTTACAGCAAGGAATC 18878 ||||| ||||||||||| || || ||||| | ||| | || |||||| | Sbjct 85151152 TGGAGGCATTTTGGAGCAGAGTACAAAGATATGGATTCAGATTACCCGGGACAAGGAGTA 85151211 Query 18879 GATCAGCTGCAAACTGTTATAGATACAATTAAAACAAACCCAGAAAGCCGACGAATGATT 18938 || |||||||||| | || || || || ||||| ||||| || | || |||| || Sbjct 85151212 GACCAGCTGCAAAAAATGATTGACACCATCAAAACCAACCCTGATGACAGAAGAATCATC 85151271 Query 18939 ATATCGTCTTGGAATCCAAAGGATATCCCCTTAATGGTACTACCTCCATGTCACACGTTA 18998 || | | ||||| ||||| ||| | ||| | |||| ||| ||||| || || | | Sbjct 85151272 ATGTGTGCCTGGAACCCAAAAGATCTTCCCCTGATGGCACTGCCTCCTTGCCATGCCCTC 85151331 Query 18999 TGTCAGTTTTACGTTGCAAACGGTGAATTATCCTGCCAAGTATACCAGAGATCGGGGGAT 19058 |||||||| || || | || || || | || |||||| | |||||||| || || ||| Sbjct 85151332 TGTCAGTTCTATGTGGTGAATGGGGAGCTGTCTTGCCAACTTTACCAGAGGTCAGGAGAT 85151391 Query 19059 ATGGGCCTTGGGGTACCGTTCAACATTGCTGGATATGCACTTCTTACCTACATAGTAGCG 19118 ||||| || || || || ||||||||||| | ||||| || || |||||||| | || Sbjct 85151392 ATGGGTCTGGGCGTGCCTTTCAACATTGCCAGCTATGCTCTGCTCACCTACATGATTGCA 85151451 Query 19119 CATGTTACAGGACTTAAAACCGGAGATTTAATTCATACAATGGGGGATGCACATATTTAC 19178 ||| | ||||| || | | || ||||| | || || |||| ||||||||||||||| Sbjct 85151452 CATATCACAGGTCTGCAGCCAGGTGATTTTGTCCACACTTTGGGAGATGCACATATTTAC 85151511 Query 19179 TTGAATCATATAGATGCTTTAAAAGTGCAGCTAGCTCGATCCCCAAAACCTTTTCCTTGC 19238 ||||||||||||| | | ||| | |||||| ||| |||| |||||| || Sbjct 85151512 CTGAATCATATAGAGCCGCTGAAAATTCAGCTACAGCGAGAACCAAGACCTTTCCCAAAG 85151571 Query 19239 CTTAAAATTATTCGAAATGTAACAGA-TATAAACGACTTTAAATGGGACGATTTTCAGCT 19297 || ||||| ||||||| || ||| || | || || ||| || || |||||| | Sbjct 85151572 CTCAAAATCCTTCGAAAAGT-TGAGACAATCGATGATTTCAAAGTTGAAGACTTTCAGAT 85151630 Query 19298 TGATGGATATAATCCACAccccccccTAAAAATGGAAATGGCTCTTTA 19345 ||| || ||||||||||| || | | ||||||||||||||| |||| Sbjct 85151631 TGAAGGGTATAATCCACATCCAACGATTAAAATGGAAATGGCTGTTTA 85151678 >seq15 Length=152823684 Score = 96.9 bits (106), Expect = 3e-15 Identities = 125/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 18960 GATATCCCCTTAATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAAC 19019 ||| | ||| | |||| ||| ||||| || || | | |||||||| || || | || Sbjct 27100277 GATCTTCCCCTGATGGCACTGCCTCCTTGCCATGCCCTCTGTCAGTTCTATGTGGTGAAT 27100218 Query 19020 GGTGAATTATCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTC 19079 || || | || ||||| | |||||||| || || |||||||| || || || || ||| Sbjct 27100217 GGGGAGCTGTCTTGCCAGCTTTACCAGAGGTCAGGAGATATGGGTCTGGGCGTGCCTTTC 27100158 Query 19080 AACATTGCTGGATATGCACTTCTTACCTACATAGTAGCGCATGTTACAGGACT 19132 |||||||| | ||||| || || |||||||| | || ||| | ||||| || Sbjct 27100157 AACATTGCCAGCTATGCTCTGCTCACCTACATGATTGCACATATCACAGGCCT 27100105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399477688167180