Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26] 5,404 sequences; 2,625,587,472 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq18 275 5e-69 seq19 141 7e-29 seq1 140 2e-28 seq5 120 2e-22 >seq18 Length=130317789 Score = 275 bits (304), Expect = 5e-69 Identities = 582/863 (67%), Gaps = 4/863 (0%) Strand=Plus/Minus Query 101534 TAAACAGCCATATGCATTTTAATTATAGGGTGTGGGTTATAGTTTTCTAATAT-AATGTC 101592 ||||||||||| | ||||||||| | || ||||| ||||| ||| ||| | || ||| Sbjct 85151678 TAAACAGCCATTTCCATTTTAATCGTTGGATGTGGATTATACCCTTC-AATCTGAAAGTC 85151620 Query 101593 ATCTGCTTTAAAGTCATCAATGCATGAAACATTTCTAGCAAATCTAAGTGTTGGAAACGG 101652 || |||| || ||||| || ||| |||| | | | | || |||| || || Sbjct 85151619 TTCAACTTTGAAATCATCGATTGTCTCAACTTTTCGAAGGATTTTGAGCTTTGGGAAAGG 85151560 Query 101653 TCTAGGAGTTCGCGTCAACTGCATTTTAAGAGCATCAATGTGATCTACATAGATGTGAGC 101712 ||| || |||| | ||| ||||| || | || || |||| | || || || || Sbjct 85151559 TCTTGGTTCTCGCTGTAGCTGAATTTTCAGCGGCTCTATATGATTCAGGTAAATATGTGC 85151500 Query 101713 ATCTCCTATAGTATGGATAAACTCTCCAGGCACTAGATTAGTGACATGAGCAATCATGCA 101772 |||||| | ||| |||| ||| || || ||| ||| |||| ||| ||||||||| | Sbjct 85151499 ATCTCCCAAAGTGTGGACAAAATCACCTGGCTGCAGACCTGTGATATGTGCAATCATGTA 85151440 Query 101773 AGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCCATATCAGCTGATCT 101832 || | |||| |||||| |||||||| || ||||| || | |||||||| |||| || Sbjct 85151439 GGTGAGCAGAGCATAGCTGGCAATGTTGAAAGGCACGCCCAGACCCATATCTCCTGACCT 85151380 Query 101833 TTGATACAGTTGACAGGAAAGCTTTCCA-TCACAGACATAAAATTGACTTAATACATGAC 101891 || || ||||| || || |||| ||| |||| ||||| || |||| | |||| | Sbjct 85151379 CTGGTAAAGTTGGCAAGACAGCTCCCCATTCAC-CACATAGAACTGACAGAGGGCATGGC 85151321 Query 101892 AAGGCGGCAACACCATTTTAGGAATGTCTGAAACATTCCAAGCACACATTAACATCCTTC 101951 |||| |||| |||| |||| ||| ||||| |||||||| | || |||| Sbjct 85151320 AAGGAGGCAGTGCCATCAGGGGAAGATCTTTTGGGTTCCAGGCACACATGATGATTCTTC 85151261 Query 101952 TATCTGTAGGGTTTGTTTTTATAGTATCAATCAACTGTTTTAATTGGTCAACTCCTTCTC 102011 | || |||||| ||||| || || ||||||| | || | ||||| ||||||| || Sbjct 85151260 TGTCATCAGGGTTGGTTTTGATGGTGTCAATCATTTTTTGCAGCTGGTCTACTCCTTGTC 85151201 Query 102012 CTTTATAATCGCGCCCAACACCTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCAT 102071 | ||||| | | | |||| || |||||||| ||||||||||| || || |||| Sbjct 85151200 CCGGGTAATCTGAATCCATATCTTTGTACTCTGCTCCAAAATGCCTCCATTGGAAACCAT 85151141 Query 102072 ACACAGGTCCAAGATCTCCTTCATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATC 102131 | || || || || || |||| | || | || |||| || | | || | ||| || Sbjct 85151140 AAACTGGGCCCAGGTCCCCTTTCTGTCGGGCAGAAAATCCCAAGCTGTCCAGAAAGTCTC 85151081 Query 102132 TAGATCCATTCGCATCCCAAATGTGCACGCCAGCTGCTGATAGCTCTTTGCTGTCAGTAG 102191 |||||||| |||||||| || ||| || | || | ||||| | || | Sbjct 85151080 GGGATCCATTGGCATCCCAGATTCTCACTCCCTTGGAGGACAATTCTTTAGCATTTGTGG 85151021 Query 102192 ATCCTCTGATAAACCACAACAGTTCTTCAACAACACCTCTCCAAAATACTCTCTTAGTAG 102251 |||| ||||||||||||||| || || | |||||| |||| || |||| || || | Sbjct 85151020 ATCCCTTGATAAACCACAACAACTCCTCCAAAACACCCTTCCAGAACACTCGTTTGGTTG 85150961 Query 102252 TTAAAAGTGGAAATTCATTTTCTAAACTAAACCTAGACTGTGTTCCAAAAATACTCAGTG 102311 | | || |||||||||| | | || | | | ||| | || || | ||| | Sbjct 85150960 TGAGCAGAGGAAATTCATCTCTCAGGCTGTATCGTGCCTGCATGCCGAACACCGACAGGG 85150901 Query 102312 TTCCAGTCCCTGTTCTGTCATTTTTAAATGACCCATAATTTAAAATGTGCTGTACCTGTG 102371 | || || || || | ||| | || | || | | |||||||||| ||||| Sbjct 85150900 TGCCTGTGCCGGTGCGGTCCTCCTTCTTGAAGCCGCAGTGCAAAATGTGCTCCACCTGCC 85150841 Query 102372 AGAGGTACTGGTGTTCTCCATGC 102394 ||||||||| ||||||||||| Sbjct 85150840 TCAGGTACTGGAGTTCTCCATGC 85150818 >seq19 Length=126249303 Score = 141 bits (156), Expect = 7e-29 Identities = 287/422 (68%), Gaps = 8/422 (2%) Strand=Plus/Plus Query 3976 TTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACATTAGAAAGA 4035 ||||| | ||| ||||||||||| |||| || | || || | || || | | | || Sbjct 29226884 TTCTTTTTATAGACTTCAAATTTATACTCAAGGCCCTTTTCCTTTTAGACCTCAAAGAGG 29226943 Query 4036 ACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGG-- 4093 ||| ||| ||| | | | |||| ||| || | | || || |||||| || Sbjct 29226944 TCACCTGGGTATCGTGGGAGAGGTTTATATCTCCCAAAATAAATTTCTGGGGGGTGGGGG 29227003 Query 4094 TGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCATGGATAAC 4153 ||| || |||| | || || |||||| | | ||||| | | || | | || | | Sbjct 29227004 TGTTACTTTCAGATTCCTGTATGATCTT-GCCACAATCTG----AGGTGACTGGGCTGAT 29227058 Query 4154 TCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTG 4213 |||| || | || || ||||||| ||||| | | |||| |||||||||| ||||| || Sbjct 29227059 TCATCACTCCCTTGTAAACAGAACCACCTCGCACTGTCCAAACCATGTCTAATTTATCTG 29227118 Query 4214 CTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAG 4273 |||||||||| | ||| || ||| |||| ||| |||| ||| || || | |||| ||| Sbjct 29227119 CTAATTCTGGTTTTTCAGTGAGTCTTAAGACATTGTCTAGACTTTTGGCAAGAAAACGAG 29227178 Query 4274 CTCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAG 4333 ||| ||||| | |||| ||||| | | |||||| | |||||||| | || |||| Sbjct 29227179 CTCCTTGTGGTGGTTCCTCGAGTTCTCTACAGAGAACTATGTTAATTCTTTCCTTCAAAG 29227238 Query 4334 GCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTT 4393 |||||||| |||| |||| || || ||| |||| |||||| | | |||| Sbjct 29227239 CTTCAGTCTTCTCAAGAATGGAGAGCC-AGGCTTCCCACCCCAAATCACCAGGTCATGTT 29227297 Query 4394 TA 4395 || Sbjct 29227298 TA 29227299 >seq1 Length=198846266 Score = 140 bits (154), Expect = 2e-28 Identities = 176/240 (73%), Gaps = 4/240 (2%) Strand=Plus/Minus Query 26935 TTTAGTCTACATTGTGAACAATGGGAGTAACGCATGTGCAGCCTACAGTCACTAGCATCT 26994 ||||| || | | | | ||||| | | |||||| |||||||| ||| ||| ||||||| Sbjct 18237901 TTTAGGCTGCCTGGCGGACAATCGAGGCAACGCAGGTGCAGCCCACACCCACCAGCATCT 18237842 Query 26995 TCTCTAGCCTAAA--TGAATTAGGGCAGGGTTGATGCCCTTTGCGCACCACTAGAATCTC 27052 |||||| ||| || |||| |||||| | | || | | || || || ||||| Sbjct 18237841 TCTCTACCCTGAAAGTGAAG--GGGCAGCTCTCAGGCTCCCTCTTCAGGACCAGGATCTC 18237784 Query 27053 TTGTTGGATAGGGACTGAGTTCATGTGGTAGTCTACATTCCCATCAGCATTAACACATCC 27112 ||| ||||| | || || |||||||||| ||| | || || || ||||| ||||| | Sbjct 18237783 TTGCTGGATGAGAACAGAATTCATGTGGTGGTCCAGCTTTCCCTCCGCATTGACACAGCG 18237724 Query 27113 TAAGTAGCGACACTTTGCTTCCCAAATCACAGAGGGATATCTATCTTGATCTTCATTGCG 27172 || ||| |||| |||||||| |||||||||||||||||||| | ||||||||||| Sbjct 18237723 CTGGTGGCGGCACTGAGCTTCCCAGATCACAGAGGGATATCTATCAGGGTCTTCATTGCG 18237664 >seq5 Length=117181667 Score = 120 bits (132), Expect = 2e-22 Identities = 96/116 (83%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 4168 TACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAATTCTGGCTGT 4227 || |||||||| ||||| | |||||| ||||||||||||||| |||| ||||| || ||| Sbjct 88596924 TAAACAGAACTGCCTCCGACTATCCAAACCATGTCTACTTTACTTGCCAATTCCGGTTGT 88596865 Query 4228 TCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTCTATGTGG 4283 || ||||| |||| |||||||| ||||| || || | ||||||||||| ||||| Sbjct 88596864 TCAATAAGTCTTAAGGCATCATCCAAACTTTTGGCAAGAAAATGAGCTCCTTGTGG 88596809 Score = 116 bits (128), Expect = 3e-21 Identities = 91/109 (83%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349 ||| ||||| | |||||||| | |||||||||| | |||||||| || ||||||||||| Sbjct 88589518 CTTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCAGG 88589459 Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCT 4398 ||| |||||||| || || ||||||||||||| | |||||||||| || Sbjct 88589458 AATGGAGAACCAGGTTTTCCTACCCATAATCACCAGATTCTGTTTACCT 88589410 Score = 104 bits (114), Expect = 2e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 4056 AAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCAT 4115 |||||| |||||| | | ||||| |||||| ||||| ||||||| |||||| || ||||| Sbjct 88599851 AAGTTTATATTTCCCCAAATCAATTTCTGGGAAAAACGTGTCACTTTCAAATTCCTGCAT 88599792 Query 4116 GATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCATAGCTTCTTTATACACAGA 4175 |||||| |||||||| ||| | || | || ||| | | |||| ||||| || | ||| | Sbjct 88599791 GATCCTTGTCACAAAGAGTCTGAGGTGGCCTGGTTGATTCATGGCTTCCTTTAAAACAAA 88599732 Query 4176 AC 4177 || Sbjct 88599731 AC 88599730 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361227407544404