Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26] 5,404 sequences; 2,625,587,472 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq3385 306 4e-78 seq17 288 1e-72 seq4 114 2e-20 seq7 111 2e-19 >seq3385 Length=62036 Score = 306 bits (338), Expect = 4e-78 Identities = 604/892 (68%), Gaps = 14/892 (2%) Strand=Plus/Minus Query 23831 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTC 23890 ||| ||| | | | | || || ||| || ||||| || || ||||| ||||| ||||| Sbjct 20963 CATGACTGCAAATCTCTGATACTCAGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTC 20904 Query 23891 TAATGATATATTTTCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTA-AATC 23949 |||||| || || ||||| ||||| | ||||| | | | | || |||| | |||| Sbjct 20903 TAATGAAATGTTCTCCATAAAATCAAAGGGATTTTCTGCCTGAAAAAT-CTTTGAGAATC 20845 Query 23950 CCAATTCAGAAATCAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAAT 24009 | | ||| || ||||| || || |||||||| || || |||| ||| || | | Sbjct 20844 CAAGTTCTATAAGTAATCTGTCAGCTACAAACTCAATGTACTGTTTCGTCAAAACATAGT 20785 Query 24010 TCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCG 24069 | ||||| || || ||| || | || | || | ||| || || ||||| || | Sbjct 20784 TAATTCCAATGAGGCCAACAGGCAAGGCTTCTGTTAAAAACTCCTGCTCAATTTGAACAG 20725 Query 24070 CGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACA 24129 | || | || || || ||| | ||||| || ||| | ||||| Sbjct 20724 CATCAGCAATGATTTCCCTCACTCTGTCTTCTGAAGGCTTGTAC---------TGAAACA 20674 Query 24130 TCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACG 24189 ||| || || || || ||||| ||||| || || || || || | ||| || ||||| | Sbjct 20673 TCAGGCAGGCAAAGTCACAGTGAAGACCTTCATCCCTGCTGATCAGTTCATTTGAAAAAG 20614 Query 24190 TGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAA 24249 | ||| | ||||| ||||| | ||| || ||||| ||||| | |||||||||||||| | Sbjct 20613 TCAGTTCAGGCATGAGGCCTCTCTTCTTTAGCCAGAATATTGCAGCAAATGATCCAGAGA 20554 Query 24250 AGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCG---CTGT 24306 || |||||||||| || || |||||||| | | |||||| ||| || | || | Sbjct 20553 AGGAAATTCCTTCCACAGCAGCAAAGGCCACCACTCTTTCCCCAAAAGTAGATTTCCTAT 20494 Query 24307 CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAG 24366 | |||||| ||||||| || || || || || ||| | |||||||| || || | Sbjct 20493 CTGCTATCCAGCGCAGAGCCCAGTCCGCTTTTTTCTTAACATATGGCATTGTTTCAATTG 20434 Query 24367 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTAT 24426 | ||||| | | | | ||| || |||| | | || || || || | | ||| | Sbjct 20433 CGTTAAATAAAAATTCCCTTTTCTTTGGATCTCTGATGTAAGTGTCTATTAGTAAACTGT 20374 Query 24427 ACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGG 24486 |||| || || |||| || || ||| || ||||| || ||||| || || ||| | Sbjct 20373 ACATCTCTGAGTGAACATTCTCGATGAGAATCTGAAAGCCATAGAAGCAGTGAGTCTCCG 20314 Query 24487 TAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGG 24546 || ||| || || || ||| || || | || |||||||| || ||||| ||||||| Sbjct 20313 GAACCTGCACCTCCTGACTAAAACGCTCCACCAAGTTTTCATTTACAATTCCATCACTGG 20254 Query 24547 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCC 24606 |||||||||| || || | || ||||| || || ||||| | | | || || |||| Sbjct 20253 CTGCAAAAAAGGCTAAGATGTGGGAGATAAAGTACTTCTCGTCGGATTTAAGCTTGTTCC 20194 Query 24607 AATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 24666 | | | || || || || | || || ||||| ||||||| || |||||| ||| | Sbjct 20193 AGTGAGGGAGGTCCTTTGACAAGTCAACCTCTTCTTCTGTCCAGAAAGATGCCCGTGCTT 20134 Query 24667 TTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCT 24718 |||||||| ||||||| ||| |||| || |||||||| || ||||| || Sbjct 20133 GCTTATACATTCTCCAGATATCAGGATACTGGATTGGAAAGATGACAAACCT 20082 >seq17 Length=136257712 Score = 288 bits (318), Expect = 1e-72 Identities = 636/943 (67%), Gaps = 33/943 (3%) Strand=Plus/Plus Query 23789 TTAAAAGTCAACATCTAAAGAAAAATGATTGTCT-TCT--TGAGACATAACTCCCATTTT 23845 ||| |||||| ||| || | |||| ||| ||| || | ||||| |||||||| | Sbjct 93987351 TTAGAAGTCAGCATGCAAGGTAAAAGAATTCTCTGTCAAATTCGACATGACTCCCATCCT 93987410 Query 23846 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTTC 23905 || || || || || | || || || || | ||||| ||||||| ||| |||||||| Sbjct 93987411 CTGATACTCGCCTACTTGCTTCTCAAAGAAGTCTGTTTTTCCTTCTAGTGAAATATTTTC 93987470 Query 23906 CATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCCCAATTCA---GAAAT 23962 |||||| || ||||||| || | | || | |||| |||| || | || Sbjct 93987471 CATGAAGTCAAATGGATTTTCTACTCTGAAAATCTTCTTAACACCCAGCTCCAGTGGAAG 93987530 Query 23963 CAATCTATCTGCGACAAACTCCA-TATATGTTTTCATCATTTCACAATTCATTCCTATAA 24021 | || || || | ||| | || | || ||||||| |||||| || | | Sbjct 93987531 C---CTGTCAGCCAAAAAATTCAATGTACTGCTTCATCAAAGTGCAATTCGCCCCGAAGA 93987587 Query 24022 GTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGT-TATA 24080 | || || || | |||| | || ||||| || || | || || | || || | | Sbjct 93987588 GCTTCACAGGCAAAGCCTCCGTGAGAAACTCCTGCCCTATCCTAACAGTGTTGGTGTTTT 93987647 Query 24081 ATAGATCTTACTGTTT-CTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGC 24139 || | ||||||||| || || | | | | | | | || || ||||||| || || Sbjct 93987648 ATTTCTTTTACTGTTTGCTCCAATGGCTTG-TGTACCAGGTGCTTGAACATCAGCCAGGC 93987706 Query 24140 GAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGG 24199 | || ||||||| |||||||||||| ||||| || || ||||||| || || || Sbjct 93987707 AGAGTCCCAGTGTAAACCCTCGTCTCTGCTAATAAACTCATTGGAAAGTGTAAGGCCCAA 93987766 Query 24200 CATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCC 24259 ||| || | || || || ||||| ||||| || ||||| ||| | ||| Sbjct 93987767 CATCAGTCTGCGATTCTTGAGCCAGAATATCGATGCAAA------------GAAGACTCC 93987814 Query 24260 TTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGG---CGCTGTCATGTATCCA 24316 ||| || || |||||||| | || || ||||||||| || | |||| |||| Sbjct 93987815 TTCCACCGCAGCAAAGGCCACAACTCATTCTCCATATGAGGACTCTTTGTCCCCAGTCCA 93987874 Query 24317 CTTTTGAGCCCAATCGGCCTTCTTTTTT---ACACAAGGCATTGTCTCTATAGCATTAAA 24373 ||||| || |||||||| || |||||||||||||| | |||||||| || Sbjct 93987875 ACGCAAGGCCCAGTCAGCCTTCTTCTTCTTCACACAAGGCATTGTTTAAATAGCATTGAA 93987934 Query 24374 GAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTC 24433 |||||| | | |||| || |||||||| || || ||||| | |||| |||||||| Sbjct 93987935 GAGATATTCTCTTTCCTTGGGATCTTTAATGTACGTGTCAATAAGGGGACTGTACATTTC 93987994 Query 24434 CGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTG 24493 || || |||||||| ||||| |||| || || |||||||| | ||||| |||| || Sbjct 93987995 AGAGTGTATGTTTTCCATGGCAGTTTGGAAGCCATAGAAACAGCGGGCCTCTGTAACTTG 93988054 Query 24494 TACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAA 24553 |||||| | |||||| || | || |||||||| ||||| || ||||| |||||||| Sbjct 93988055 AACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTGACTATGCCATCACTCGCTGCAAA 93988114 Query 24554 AAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATT 24613 || |||| | || |||||||| | | || || || | || | ||| | | Sbjct 93988115 GAAAGCCAGAATGTGAGCTATAAAATGTCTCTCATCCAGTTTCAGAGCTTCCCAGTGTTG 93988174 Query 24614 GATATCTTTAGATATATCCA-CTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTAT 24672 ||| | || || | |||| |||||| | |||||||| || ||||| || || || | Sbjct 93988175 AATACCCTTGGAAAGGTCCACCTTCTT-GGCAGTCCAAAAGGAGGCCTCAGCTTTCTTGT 93988233 Query 24673 ACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAA 24715 |||| | |||||| ||||| |||| ||| ||||| | |||||| Sbjct 93988234 ACATCTGCCAGATATCATGGTATTCAATGGGAAAGACAACAAA 93988276 Score = 116 bits (128), Expect = 4e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 53150 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 53209 || |||||||| || ||||| ||||| |||||||| || ||||||||||| || || | Sbjct 91856955 ACCTGAAATTCCCCTGACAAGACTCTTCGAGTGTAGATGTTACTGGTATAAGGCTCAATG 91856896 Query 53210 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 53269 ||||||||||| |||| ||| || |||||||| ||||| ||||| || || | | |||| Sbjct 91856895 GACTCATTATTCCCCAGAATCTGGGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 91856836 Query 53270 CTATTTCTAAGACCGTA 53286 || || || | ||| || Sbjct 91856835 CTGTTCCTTATACCATA 91856819 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 53381 GATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAAT 53440 ||||| |||| || || || || || | || || ||||||||||| || || || | Sbjct 91853968 GATCCCTCATACGTTTCATAGGGGCCATACTCCTTGGCTAGTTCACAGCTGGCTTCCAGG 91853909 Query 53441 GCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCA 53500 || || || ||||||||||| ||||||| |||||||| || ||||| |||| ||| Sbjct 91853908 GCTCCATAGTAAATGGTTTCAAAGATCTGCTTATTTAATAACTGGGCTTCTGGGCTCTCA 91853849 Query 53501 AATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGT 53560 || || || | | || || || || |||||||| ||||| || ||||| || || || Sbjct 91853848 AAGGGGTATCTCATCAGGATGAAAGCATCTGCTAAACCTTGTACCCCAATTCCAATGGGA 91853789 Query 53561 CTATGTCTCTTATTAGA 53577 | ||| | ||||| || Sbjct 91853788 CGATGGCGTTTATTTGA 91853772 Score = 105 bits (116), Expect = 8e-18 Identities = 123/166 (74%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 54768 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 54827 |||| || | ||| |||||||||||||| | || || |||||||| || || || || | Sbjct 91840174 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACGGCTATCCTTGCTGCCAGGA 91840115 Query 54828 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCA 54887 ||||||| || || || | || || | || || ||| | || || | ||| ||||||| Sbjct 91840114 TGGCATAGTCAGGGTGCTTCGTGGTCAAGGTCGCGGCTGTCTCAGCAGCCAGGGTGTCCA 91840055 Query 54888 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 54933 ||| || || || || ||| |||||| |||||||| || ||||| Sbjct 91840054 GTTCCACTGTGGTGACCCCACTATATAGGCCTTGGATTACTTTCAT 91840009 Score = 93.3 bits (102), Expect = 5e-14 Identities = 123/171 (72%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 52875 TCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 52934 |||| ||||| || |||||||| || |||||| || | || || || |||||||| | Sbjct 91860047 TCCAACCGTAGAAGTGCATACTAGTGAGTTTGCCGTAGTTGGGCTCAGCAATATGGATGT 91859988 Query 52935 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 52994 | | ||| || || ||||||||||| || || || || || ||||| || | | |||| Sbjct 91859987 TTAAAGACTGGCTCTGATCGATGAAAGCACCTCTCTCGGCTGCCATCTTGAGAACAGTCT 91859928 Query 52995 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 53045 | || | |||||||| | || ||||| | | |||| | || || |||| Sbjct 91859927 TCTGAGAGATTTCCCACACGGTCTTATAGAGTTGCTTCAGGTCATCAGGAA 91859877 Score = 89.7 bits (98), Expect = 6e-13 Identities = 115/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 54404 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 54463 ||||||| || | || | || || ||||| || | |||||||| || || || ||| Sbjct 91844438 CTAGACAGCTGTGGGCGGTTGGTCCCAGCATTGAAGAGAGTAGGAGAGGCATGAGTGAAC 91844379 Query 54464 CATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATT 54523 || || ||||||||||| ||||| || || || || | || ||||| || ||||| Sbjct 91844378 CACTTCTCAGAAAGTAGGTTGTAGGTTTCAATTGCAGCATCAATATCTTCTTTGTGAATC 91844319 Query 54524 CCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCA 54562 || || | || | ||| ||||| ||||| ||||||||| Sbjct 91844318 CCCACAGAAACCCTCATCAACATATGCTGTGGTCTTTCA 91844280 >seq4 Length=114123490 Score = 114 bits (126), Expect = 2e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||||||||| ||||| | || |||||||| || || || ||||| || || || || | Sbjct 16582949 CCTCGTCTCTGCTAATAAGCTCATTGGAAAATGTAAGGCCCGGCATCAGCCCCCGTTTCT 16582890 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | ||||| ||||| || ||||| || || |||||||| ||||||||||| || ||||||| Sbjct 16582889 TGAGCCAGAATATTGATGCAAAAGAACCGGAAAAGAAGATTCCTTCTACGGCGGCAAAGG 16582830 Query 24277 CAATAAGTCTTTCTCC 24292 | | || | |||||| Sbjct 16582829 CCACAACGCGTTCTCC 16582814 >seq7 Length=104786220 Score = 111 bits (122), Expect = 2e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 24159 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 24218 || || || || || | ||| || ||||| || ||||| ||||| ||||| | ||| || Sbjct 35873931 TCATCCCTGCTGATCAGTTCATTTGAAAAAGTCAGTCCAGGCATGAGGCCTCTCTTCTTT 35873990 Query 24219 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCA 24278 ||||| ||||| | |||||||||||||| |||||||||||||| || || |||||||| Sbjct 35873991 AGCCAGAATATTGCAGCAAATGATCCAGAGAAGAAAATTCCTTCCACAGCAGCAAAGGCC 35874050 Query 24279 ATAAGTCTTTCTCC 24292 | | |||||| || Sbjct 35874051 ACCACTCTTTCCCC 35874064 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593681494105920