Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26] 5,404 sequences; 2,625,587,472 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq19 226 3e-54 seq17 122 1e-22 seq2 114 2e-20 >seq19 Length=126249303 Score = 226 bits (250), Expect = 3e-54 Identities = 257/345 (74%), Gaps = 0/345 (0%) Strand=Plus/Minus Query 83049 GCGGGGGGAGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGT 83108 || ||| ||||||| || ||||| || || | | | | ||| || ||||| |||||| Sbjct 109208115 GCTGGGACAGCAGGGTTTCTATGTCAGGTTCGATGTCGATGGTATGAAAGCGGCGGCTGT 109208056 Query 83109 ACCTGCGCACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGT 83168 ||||||||||||| ||||| | |||||||| ||||||||| ||||||||||| | || Sbjct 109208055 ACCTGCGCACGGGAACACCGTCGGGACCCACCAGGAACTTCTCAAAGTTCCAGGCAATGT 109207996 Query 83169 CGTTGCGGCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGT 83228 ||||||||||||| |||||||| ||| || ||||||| ||| ||||| | || Sbjct 109207995 CGTTGCGGCACACCGGAGACCAAATGATGTACTTGGGGTCGGTCATGAGCGCAGTGGGGT 109207936 Query 83229 CGTCGCTAGGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCAC 83288 | || || || | |||| ||| | || ||||||| |||||||| || ||| | ||| Sbjct 109207935 CATCACTGGGTGTTGGCAAGGCATTCCGCAGGAAGGTAAAGAGCGGGTGAGCCTTCTCAC 109207876 Query 83289 CGTTGACCTCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGA 83348 | || || ||||||||||| || | |||| || |||||||| ||| ||||| |||| Sbjct 109207875 CATTCACTTCGCACTTCTCAAACAATGTAAAATTGGGCTCGAACCCGCCACCAGGTCGGA 109207816 Query 83349 CGTGCTTCAGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCT 83393 ||| ||| |||||| || ||||| |||||| | | || |||| Sbjct 109207815 CGTACTTGAGGGAACTCAGAATCTCCTCATTCTTGCCATTCTCCT 109207771 >seq17 Length=136257712 Score = 122 bits (134), Expect = 1e-22 Identities = 315/475 (66%), Gaps = 9/475 (2%) Strand=Plus/Minus Query 83068 GATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGCACGGGCGTGCC 83127 ||| || ||||| | | | ||||||| ||| ||||||||| | | | ||| || Sbjct 89512970 GATATCAGGCTCGATGTTGATGGTCTGGAAGCTGTGGCTGTAGCGACAGAAAGGCTCCCC 89512911 Query 83128 GTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCACACTGGAGA 83187 || | || | | ||||||||| |||||||||| |||||| | || ||| ||| Sbjct 89512910 TTCTGGCCCTATGAGGAACTTCTCTAAGTTCCAGGACACGTCTGAGTGGTGCACGGGACT 89512851 Query 83188 CCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGGCGCCGGCAG 83247 ||| ||||||| ||| ||| ||| ||| | | | |||||| ||| ||||| Sbjct 89512850 CCATATGATGAGCTTGGGATCGGTCATGAGGGAGAACGGGTCGTCATAAGGGTTGGGCAG 89512791 Query 83248 GGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCT-TGCACCGTTGACCTCGCACTTCT 83306 ||| ||| |||| |||| ||||| | | ||| || ||||| || ||||| | Sbjct 89512790 CTTGTCTTTCAGGTAGGCAAAGACAGGATGCTCATTCTGC-CCATTGACGTCACACTTTT 89512732 Query 83307 CGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAGGGAAGGCA 83366 | || ||||| | |||| | | || || ||| ||||| | ||| ||| || Sbjct 89512731 GGGTAAGACTAAAGGTGGGCTGGTACCCAC-CCTAGGGCGGACATACTTGAGGCTGTTCA 89512673 Query 83367 AGATCTCGGCATTCTGGGCGTTTTCCTGGTGACCGAACTGGTTACACGGGAACCCAAGCA 83426 |||||| | ||||| ||| ||| || ||||||||||| || ||||| || || | Sbjct 89512672 GGATCTCCTCGTTCTGACAGTT---CTGATGTCCGAACTGGTTGCAAGGGAAGCCGAGAA 89512616 Query 83427 CTACCAGCCCCCGAGCTCCTAGGCGCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGA 83486 ||||||| | || | | | | | | |||||| || | |||| |||| |||||| Sbjct 89512615 CTACCAGGCGCCTGG---GAAAGTGACATTTCAGCTCATTGAGCTGATTGTAGTCCCGGG 89512559 Query 83487 CCGTGCTACCTCAGAGGGACGCTACGTTCTCGATGAGCAAGACCCGGCCCCGTAA 83541 || | |||||||| ||| | || ||||| || |||| ||| ||| || || Sbjct 89512558 TAGTTGTTCCTCAGAGTGACACCACATTCTCAATCAGCACAGCCCTGCCTCGGAA 89512504 >seq2 Length=131945496 Score = 114 bits (126), Expect = 2e-20 Identities = 186/260 (72%), Gaps = 6/260 (2%) Strand=Plus/Plus Query 50415 TGCGCAAGATGTACG-GCGCAAGCAGGTCTATCTACAACTTCGCTGTGCGTATGCTCGTG 50473 |||||| || |||| | ||| || ||| || ||||||||| ||| |||||||| Sbjct 41581739 TGCGCAGCATCTACGAGAGCA-GCCTGTCCATTGGCAACTTCGCCTCCCGTCTGCTCGTG 41581797 Query 50474 TACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACTGCTACGGC 50533 || | || || |||||||| || |||||||||| || ||| | ||||||| |||| Sbjct 41581798 CACCTCTTCCCGGAGCTCTTCACCCACGAGAACCTGCGCAAGCAGTACAACTGCAGCGGC 41581857 Query 50534 TCCATGGGCAAGC-GCAGGCTCGACCCGCTACGCCTGCGCTTGCTCCGGCACTATGTGCA 50592 ||| |||||||| |||| || || || ||| | | || |||| ||||| ||||| Sbjct 41581858 TCCCTGGGCAAGAAGCAG-CTGGATCCTGCCCGCATCAGGCTGATCCGCCACTACGTGCA 41581916 Query 50593 GTTGCTGCACCCGGCGGCGCGCAACGAGCGCGTGTGGATCACAAAGTTCCT-GGCGTGCC 50651 | | || ||||| || ||||| |||||||||| | ||||| | ||| || Sbjct 41581917 GCTCCTCTACCCGAGAGCCAAGAACGACCGCGTGTGGACCCTGGAGTTCGTAGGCAAGC- 41581975 Query 50652 TGGACGAGCGCTGCCGGCGC 50671 ||||||||||||| |||||| Sbjct 41581976 TGGACGAGCGCTGTCGGCGC 41581995 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608755675776160