Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26] 5,404 sequences; 2,625,587,472 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq15 125 6e-24 seq3 122 7e-23 seq10 114 1e-20 seq20 96.9 3e-15 seq6 82.4 6e-11 >seq15 Length=152823684 Score = 125 bits (138), Expect = 6e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| |||| |||||||| || || ||||| || || | |||||| || | || Sbjct 125084960 AGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCTGACAGGGTGCGGCCATCT 125085019 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| ||||| ||| | || || ||||||||||| ||| | ||| |||||||| Sbjct 125085020 TCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 125085079 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 ||||||| || || | | | || |||| |||||| |||| ||| |||||| Sbjct 125085080 TGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGTC 125085139 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || || ||||| ||||| ||||| || ||||| Sbjct 125085140 TTACCAGTTAAGGTTTTCACAAAGATCTGCAT 125085171 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||||| | ||| ||||| | || || |||| ||||| | ||||| ||| | ||| Sbjct 26701592 AGCACCAGGTACAAGGTGGAATGGTTCTGGATGTAGTAGTCGGAAAGGGTGTGGCCATCC 26701651 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 ||||| ||||||| || | || || ||||||||||| | || | |||||||||||| Sbjct 26701652 TCCAGTGGTTTGCCTGCGAATATCAGCCTCTGCTGGTCAAGTGGGATGCCTTCCTTGTCT 26701711 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| || || | || || |||| ||||| || | || |||||| Sbjct 26701712 TGGATCTTGACCTTGACATTCTTGATGGTGTCACTGGGCTGGACCTCAAAAGTGATGGTC 26701771 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179 ||||| || | || || | || || ||||| ||| Sbjct 26701772 TTGCCTGTCAGGGTCTTCATGAAGATCTGCATGTTG 26701807 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||||| | ||| ||||| | || || |||| ||||| | ||||| ||| | ||| Sbjct 26702797 AGCACCAGGTACAAGGTGGAATGGTTCTGGATGTAGTAGTCGGAAAGGGTGTGGCCATCC 26702856 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 ||||| ||||||| || | || || ||||||||||| | || | |||||||||||| Sbjct 26702857 TCCAGTGGTTTGCCTGCGAATATCAGCCTCTGCTGGTCAAGTGGGATGCCTTCCTTGTCT 26702916 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| || || | || || |||| ||||| || | || |||||| Sbjct 26702917 TGGATCTTGACCTTGACATTCTTGATGGTGTCACTGGGCTGGACCTCAAAAGTGATGGTC 26702976 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179 ||||| || | || || | || || ||||| ||| Sbjct 26702977 TTGCCTGTCAGGGTCTTCATGAAGATCTGCATGTTG 26703012 >seq3 Length=125065471 Score = 122 bits (134), Expect = 7e-23 Identities = 166/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 20950 CCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCA 21009 |||||| || | ||| |||| |||| || ||||| || || ||||| || || | | Sbjct 62144670 CCCCTC--AGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAGA 62144613 Query 21010 GGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCA 21069 |||| || | || || ||||| ||||||||| | || || ||||||||||| ||| | Sbjct 62144612 GGGTGCGGCCATCTTCTAGCTGCTTGCCCGCAAAGATCAGCCTCTGCTGGTCAGGGGGGA 62144553 Query 21070 CGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTT 21129 ||| || || || |||||| ||||| | ||| || |||| ||||||| | Sbjct 62144552 TGCCCTCTTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCT 62144493 Query 21130 CCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGA 21180 ||| ||| |||||||||||||| | || || || || || |||||||||| Sbjct 62144492 CCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATTTTGA 62144442 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || ||||| || | ||||||| ||||| |||||||| || || ||||| || || | | Sbjct 98064592 CCACCTCGAAGACGCAGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAATCAGAC 98064651 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| ||| | ||||| ||||||||||| || | || || ||||||||||| || Sbjct 98064652 AGGGTGTGGCCATCCTCTAGCTGTTTGCCGGCGAATATCAGCCTCTGCTGGTCAGGTGGG 98064711 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| |||||| || || | ||| || |||| |||||| Sbjct 98064712 AGGCCCTCCTTGTCTTGGATCTTGGCCTTTACATTCTCGATGGTGTCACTGGGCTCTACC 98064771 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179 || | || ||||||||||| | | || || || || || ||||| ||| Sbjct 98064772 TCAAGAGTGATGGTCTTGCCCATCAGGGTCTTCACGAAGATCTGCATGTTG 98064822 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/226 (70%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 20950 CCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCA 21009 |||||| || | ||| |||| |||| || ||||| || || ||||| || || | | Sbjct 62144898 CCCCTC--AGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAGA 62144841 Query 21010 GGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCA 21069 | || || | || || ||||| ||||| ||| | || || ||||||||||| ||| | Sbjct 62144840 GAGTGCGGCCATCTTCTAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGA 62144781 Query 21070 CGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTT 21129 ||| || || || |||||| ||||| | ||| || |||| ||||||| | Sbjct 62144780 TGCCCTCTTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACCT 62144721 Query 21130 CCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||| ||| ||||||||||| || | || || || || || ||||| Sbjct 62144720 CCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 62144675 >seq10 Length=90668104 Score = 114 bits (126), Expect = 1e-20 Identities = 143/196 (73%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 20956 GCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTT 21015 |||| | ||||||| ||||| |||||||| || || ||||| ||||| | |||||| Sbjct 33660457 GCAGGCGCAGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGC 33660516 Query 21016 GGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTT 21075 || | ||||||||||||||||||| | || || ||||||||||| || | ||||| Sbjct 33660517 GGCCATCCTCCAGCTGTTTGCCCGAGAATATCAGCCTCTGCTGGTCAGGAGGGATGCCTT 33660576 Query 21076 CCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGG 21135 ||||||| |||||| || || | ||| || |||| |||||| || | | Sbjct 33660577 CCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCAAGAG 33660636 Query 21136 TAATGGTCTTGCCGGT 21151 | ||||||||||| || Sbjct 33660637 TGATGGTCTTGCCCGT 33660652 >seq20 Length=148322235 Score = 96.9 bits (106), Expect = 3e-15 Identities = 156/223 (70%), Gaps = 1/223 (0%) Strand=Plus/Plus Query 20958 AGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGG 21017 |||| ||| |||| |||| || |||| || || ||||| || || | | ||| || Sbjct 135500337 AGCCAGAGGACCAGGTGCAGGGTCAACTCTTTCTGGATGTTGTAATCAGAGAAGGTGCGG 135500396 Query 21018 GCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCC 21077 | || ||||| || ||||| ||| | || || |||||||||| | || | ||| || Sbjct 135500397 CCATCTTCCAGTTGCTTGCCTGCAAAGATGAGCCTCTGCTGGT-CGGGGTGATGCCCTCT 135500455 Query 21078 TTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTA 21137 || || |||||| ||||| | ||| || |||| ||||||| | || | ||| Sbjct 135500456 TTATCCTGGATCTTGGCCTTCACATTCTCGATGGTTTCACTGGGCTCCATCTCTAGGGTG 135500515 Query 21138 ATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGA 21180 ||||||||||| || | || || | || ||||||||||||| Sbjct 135500516 ATGGTCTTGCCAGTCAGGGTCTTCTCGAAGATTTGCATTTTGA 135500558 >seq6 Length=117542938 Score = 82.4 bits (90), Expect = 6e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || ||||| || || | ||||| ||| | |||||||||||||||||||| ||||| | | Sbjct 35538740 CCACCTCGAAGTCTCAACACCAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGAC 35538799 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTC 21061 | || || | || |||||||| || || ||| | || || |||||||| || Sbjct 35538800 AAAGTACGGCCATCTTCCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGATC 35538852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422231389481264