Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26] 5,404 sequences; 2,625,587,472 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq18 266 2e-66 seq15 82.4 5e-11 >seq18 Length=130317789 Score = 266 bits (294), Expect = 2e-66 Identities = 583/868 (67%), Gaps = 8/868 (1%) Strand=Plus/Minus Query 96898 TAAACAGCCATGGGCATTTTTATGCTAGGGTAAGGGTTATAGTTTTCCAGAATAATGTCA 96957 ||||||||||| |||||| || | || | || ||||| ||| | || ||| Sbjct 85151678 TAAACAGCCATTTCCATTTTAATCGTTGGATGTGGATTATACCCTTCAATCTGAAAGTCT 85151619 Query 96958 TTTGCTTTAAAATCATCAATAGATGCAATCTTTCTGGCAAACTTTAGTGTTGGGAAAGGC 97017 | |||| |||||||| || | ||| |||| | || || |||||||||| Sbjct 85151618 TCAACTTTGAAATCATCGATTGTCTCAACTTTTCGAAGGATTTTGAGCTTTGGGAAAGGT 85151559 Query 97018 CTGGGAGTTCGCGTAAGCTGCTCTGTGAGAGCATCAATGTGATTCACATAAATGTGAGCA 97077 || || |||| ||||| | | || | || || ||||||| ||||| || ||| Sbjct 85151558 CTTGGTTCTCGCTGTAGCTGAATTTTCAGCGGCTCTATATGATTCAGGTAAATATGTGCA 85151499 Query 97078 TCTCCTAAAGTGTGAATAAATTCTCCAGGAACTAAATCAGTGACATGGGCGATCATACAA 97137 ||||| |||||||| | ||| || || || | | | |||| ||| || ||||| | Sbjct 85151498 TCTCCCAAAGTGTGGACAAAATCACCTGGCTGCAGACCTGTGATATGTGCAATCATGTAG 85151439 Query 97138 GTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCTAGTCCCATATCAGCTGATCTT 97197 || | |||| |||||| |||||||| |||||||| || || |||||||| |||| || Sbjct 85151438 GTGAGCAGAGCATAGCTGGCAATGTTGAAAGGCACGCCCAGACCCATATCTCCTGACCTC 85151379 Query 97198 TGATATAACTGACAGGAAAGCTTTCCA-TCACACACATAAAACTGACTCAATACATGACA 97256 || || | || || || |||| ||| |||| |||||| ||||||| | |||| || Sbjct 85151378 TGGTAAAGTTGGCAAGACAGCTCCCCATTCAC-CACATAGAACTGACAGAGGGCATGGCA 85151320 Query 97257 GGGGGGCAACGCCATTTTTGGAACATCTAAGACATTCCAAGCACACATCAACATTCTTCT 97316 || |||| ||||| |||| |||| ||||| |||||||| | |||||||| Sbjct 85151319 AGGAGGCAGTGCCATCAGGGGAAGATCTTTTGGGTTCCAGGCACACATGATGATTCTTCT 85151260 Query 97317 ATCGGTTGGGTTTGTGTGTATGGTATTAATTATCTGCTTTAATTGATCAACGCCTTCTCC 97376 || ||||| || | ||||| | ||| || | | | || || || |||| ||| Sbjct 85151259 GTCATCAGGGTTGGTTTTGATGGTGTCAATCATTTTTTGCAGCTGGTCTACTCCTTGTCC 85151200 Query 97377 ACCATAATTGTGCTTAAGACCTTGATATTCTGCTCCAAAATGCCTCCATTGGAATCCATA 97436 |||| | | | ||| || |||||||||||||||||||||||||| ||||| Sbjct 85151199 CGGGTAATCTGAATCCATATCTTTGTACTCTGCTCCAAAATGCCTCCATTGGAAACCATA 85151140 Query 97437 AACAGGTCCAAGGTCTCCTTCTTCTCTATCACAGAAA---CCAAGCTTATCTAAATAGGA 97493 ||| || || ||||| ||| |||| | |||||| |||||| | || | | || Sbjct 85151139 AACTGGGCCCAGGTCCCCT--TTCTGTCGGGCAGAAAATCCCAAGC-TGTCCAGAAAGTC 85151083 Query 97494 CCTAGATCCATTTGCATCCCAAATGTGCACACCAGATGCTGCAAGCTCTTTGCTGTCAGT 97553 | |||||||| |||||||| || ||| || | | | ||||| | || Sbjct 85151082 TCGGGATCCATTGGCATCCCAGATTCTCACTCCCTTGGAGGACAATTCTTTAGCATTTGT 85151023 Query 97554 AGATCCTCTGATAAACCACAACAATTCTTCCACAACACCTCTCCAAAATACTCTCTTAGT 97613 ||||| |||||||||||||||| || |||| |||||| |||| || |||| || || Sbjct 85151022 GGATCCCTTGATAAACCACAACAACTCCTCCAAAACACCCTTCCAGAACACTCGTTTGGT 85150963 Query 97614 TGTTAAGAGAGGAAAATCCTTTTCTAAGCTGTATCTAGACTGCATTCCAAAAACACTCAA 97673 ||| | |||||||| || | | | |||||||| | |||||| || || || || Sbjct 85150962 TGTGAGCAGAGGAAATTCATCTCTCAGGCTGTATCGTGCCTGCATGCCGAACACCGACAG 85150903 Query 97674 TGTTCCAACTCCTGTTCTGTCGTGTTTAAAATTCCCACAATTTAAAATGTGCTTGACCTG 97733 || || || || | ||| | || || || | |||||||||| ||||| Sbjct 85150902 GGTGCCTGTGCCGGTGCGGTCCTCCTTCTTGAAGCCGCAGTGCAAAATGTGCTCCACCTG 85150843 Query 97734 AGAGAGGTACTGGTGCTCTGCATGCGGC 97761 ||||||||| | ||| ||||| || Sbjct 85150842 CCTCAGGTACTGGAGTTCTCCATGCCGC 85150815 >seq15 Length=152823684 Score = 82.4 bits (90), Expect = 5e-11 Identities = 90/117 (77%), Gaps = 2/117 (2%) Strand=Plus/Plus Query 97402 TATTCTGCTCCAAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCT 97461 || |||||||||||||||||||||||||| |||||||| || || ||||| ||||| | | Sbjct 27105595 TACTCTGCTCCAAAATGCCTCCATTGGAAACCATAAACTGGGCCCAGGTCCCCTTCCTGT 27105654 Query 97462 CTATCACAGAA-ACCAAGCTTATCTAAATAGGACCTAGATCCATTTGCATCCCAAAT 97517 | || | || |||||| | || | | || | |||||||| |||||||| || Sbjct 27105655 CGGGCAGAAAATCCCAAGC-TGTCCAGAAAGTCTCGGGATCCATTGGCATCCCAGAT 27105710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346761160372280