Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26] 5,404 sequences; 2,625,587,472 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq17 109 5e-19 seq15 107 2e-18 seq3 107 2e-18 seq18 91.5 1e-13 seq8 87.8 2e-12 seq11 84.2 2e-11 seq12 82.4 7e-11 seq6 82.4 7e-11 >seq17 Length=136257712 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 ||| || || | ||||||||||| || | |||||||| |||||||||||||| || Sbjct 39746537 ACCACCCCGAAGTCTCAACACCAGATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGA 39746478 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 || ||| || ||| || ||||| || ||||| |||| || | ||||||||| ||||| Sbjct 39746477 CAAAGTCCGGCCATCTTCCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGATCAGGAGG 39746418 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 || || ||||| || || || || || | ||| | ||||||| | || || Sbjct 39746417 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAAC 39746358 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| | || | ||||| || || || || || ||| | |||||||| Sbjct 39746357 CTCTAGCGTGATGGTTTTCCCCGTAAGGGTCTTCACAGAGATCTGCAT 39746310 >seq15 Length=152823684 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | || |||||||| || ||||||||||| || ||||| ||| || Sbjct 125084963 ACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCTGACAGGGTGCGGCCATCTTCC 125085022 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || || || |||| || | |||||| || || || |||||||||||||| Sbjct 125085023 AGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 125085082 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || ||| || || | || | |||||| || ||||||||| | ||| | || || Sbjct 125085083 ATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGTCTTA 125085142 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || | ||||| ||||| |||||||| Sbjct 125085143 CCAGTTAAGGTTTTCACAAAGATCTGCAT 125085171 >seq3 Length=125065471 Score = 107 bits (118), Expect = 2e-18 Identities = 152/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||| ||| | || |||||||| || ||||||||||| || ||| | ||| Sbjct 98064606 CAGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAATCAGACAGGGTGTGGCCATC 98064665 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||| |||||||| || ||| | || || | |||||| || || || | |||||||||||| Sbjct 98064666 CTCTAGCTGTTTGCCGGCGAATATCAGCCTCTGCTGGTCAGGTGGGAGGCCCTCCTTGTC 98064725 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 | || || || || | |||| |||||| || ||| ||||| | || | || Sbjct 98064726 TTGGATCTTGGCCTTTACATTCTCGATGGTGTCACTGGGCTCTACCTCAAGAGTGATGGT 98064785 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||||| |||| || || || || ||||||||| Sbjct 98064786 CTTGCCCATCAGGGTCTTCACGAAGATCTGCATG 98064819 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | || |||||||| || ||||||||||| | |||||| ||| || Sbjct 62144883 ACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAGAGAGTGCGGCCATCTTCT 62144824 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || || || |||| || | |||||| || || || |||||||| || || Sbjct 62144823 AGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCCTGG 62144764 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| |||||| || ||| ||||| | ||| | || ||| Sbjct 62144763 ATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 62144704 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || ||||| || || || || ||||||||| Sbjct 62144703 CCAGTCAGGGTCTTCACGAAGATCTGCATG 62144674 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | || |||||||| || ||||||||||| | ||||| ||| || Sbjct 62144655 ACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAGAGGGTGCGGCCATCTTCT 62144596 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || || || |||| || | |||||| || || || |||||||| || || Sbjct 62144595 AGCTGCTTGCCCGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCCTGG 62144536 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| |||||| || ||| ||||| | ||| | || ||| Sbjct 62144535 ATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 62144476 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||||| || || || || |||||||| Sbjct 62144475 CCGGTCAGGGTCTTCACGAAGATCTGCAT 62144447 >seq18 Length=130317789 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 ||| || || | |||||||||||| || | || ||||| |||||||||||||| || Sbjct 111279658 ACCACCCCGAAGTCTCAACACCAAATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGA 111279717 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 || ||| || ||| || ||||| || ||||| ||| || | ||||||||| ||||| Sbjct 111279718 CAAAGTCCGGCCATCTTCCAGCTGCTTACCAGCAAAGACCAGCCTCTGCTGATCAGGAGG 111279777 Query 118631 TATGCCCTCCTTGTC 118645 || || ||||| || Sbjct 111279778 AATTCCTTCCTTATC 111279792 >seq8 Length=97876770 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/215 (69%), Gaps = 1/215 (0%) Strand=Plus/Minus Query 118524 CTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTA 118583 |||||||| | || | || ||||| |||||||||||||| || || ||| | | Sbjct 13844525 CTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAAACA-AGTATGGCCA 13844467 Query 118584 TCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTG 118643 || || ||||| || ||||| ||| || | ||||||||| ||||| || || ||||| Sbjct 13844466 TCTTCCAGCTGCTTACCAGCAAAGACCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTA 13844407 Query 118644 TCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACC 118703 || || || || || | ||| | ||||||| | || ||||||| || | Sbjct 13844406 TCCTGGATCTTGGCCTTTACATTTTCTATGGTGTCCAGGGGTTCAACCTCGAGCGTGATG 13844347 Query 118704 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || | || || || |||||||||||||| Sbjct 13844346 GTCTTCCCCATAAGGGTCTTCACAAAAATCTGCAT 13844312 >seq11 Length=59623150 Score = 84.2 bits (92), Expect = 2e-11 Identities = 153/223 (69%), Gaps = 1/223 (0%) Strand=Plus/Minus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 ||| || || | ||||||||||| || | |||||||| |||||||||||||| || Sbjct 13412288 ACCACCCCGAAGTCTCAACACCAGATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGA 13412229 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 || ||| || ||| || |||| || ||||| ||| || | |||||||| ||| | Sbjct 13412228 CAAAGTCCGGCCATCTTCCAGCT-CTTACCAGCAAAGACCAGCCTCTGCTGATGAGGAAG 13412170 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 || || |||||||| | || || || | ||| | ||||||| | || || Sbjct 13412169 AATTCCTTCCTTGTCCTGGGTCTTGACCTTTACATTTTCTATAGTGTCCGAGGGTTCAAC 13412110 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATC 118733 ||||| || | ||||| || | || || || |||||||| Sbjct 13412109 CTCGAGCGTGATGGTTTTCCCCATTAGGGTCTTCTCAAAAATC 13412067 Score = 84.2 bits (92), Expect = 2e-11 Identities = 153/223 (69%), Gaps = 1/223 (0%) Strand=Plus/Minus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 ||| || || | ||||||||||| || | |||||||| |||||||||||||| || Sbjct 13413239 ACCACCCCGAAGTCTCAACACCAGATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGA 13413180 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 || ||| || ||| || |||| || ||||| ||| || | |||||||| ||| | Sbjct 13413179 CAAAGTCCGGCCATCTTCCAGCT-CTTACCAGCAAAGACCAGCCTCTGCTGATGAGGAAG 13413121 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 || || |||||||| | || || || | ||| | ||||||| | || || Sbjct 13413120 AATTCCTTCCTTGTCCTGGGTCTTGACCTTTACATTTTCTATAGTGTCCGAGGGTTCAAC 13413061 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATC 118733 ||||| || | ||||| || | || || || |||||||| Sbjct 13413060 CTCGAGCGTGATGGTTTTCCCCATTAGGGTCTTCTCAAAAATC 13413018 >seq12 Length=182815943 Score = 82.4 bits (90), Expect = 7e-11 Identities = 155/228 (68%), Gaps = 4/228 (2%) Strand=Plus/Plus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 ||| || || | ||||||||||| || | || ||||| |||||||||||||| | Sbjct 146741556 ACCACCACGAAGTCTCAACACCAGATGAAGGGTGGACTCCTTTTGAATGTTGTA----GT 146741611 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 || ||| || ||| | | | || ||||| |||| || | ||||||||| ||||| Sbjct 146741612 CAAAGTCCGGCCATCTTTCGGAGGCTTACCAGCAAAGATCAGCCTCTGCTGATCAGGAGG 146741671 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 || || ||||| || | || || || | ||| | |||||| | || || Sbjct 146741672 AATTCCTTCCTTATCCTGGGTCTTGACCTTTACATTTTCTATAGTGTCCCAGGGTTCAAC 146741731 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| | || | ||||| || || || || || |||||||||||||| Sbjct 146741732 CTCCAGCGTGATGGTTTTCCCCGTAAGGGTCTTCACAAAAATCTGCAT 146741779 >seq6 Length=117542938 Score = 82.4 bits (90), Expect = 7e-11 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 ||| || || | ||||||||||| || | || ||||| |||||||||||||| || Sbjct 35538739 ACCACCTCGAAGTCTCAACACCAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGA 35538798 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 || ||| || ||| || ||||| || ||||| |||| || | ||||||||| ||||| Sbjct 35538799 CAAAGTACGGCCATCTTCCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGATCAGGAGG 35538858 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433801827387568