Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26] 5,404 sequences; 2,625,587,472 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq17 105 8e-18 seq5 104 3e-17 seq3 102 9e-17 seq1 102 9e-17 seq15 98.7 1e-15 seq2 98.7 1e-15 seq16 96.9 4e-15 seq18 84.2 3e-11 >seq17 Length=136257712 Score = 105 bits (116), Expect = 8e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 42971 CAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTC 43030 |||||||| ||| | || |||||||||||| ||||| |||| || |||||| | || Sbjct 39746522 CAACACCAGATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTCCGGCCATC 39746463 Query 43031 ATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 43090 || |||||||||||||| || || || | |||||| || | || | | ||||| || Sbjct 39746462 TTCCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 39746403 Query 43091 CATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGT 43150 | ||| || || | | | | ||||| | ||| || || | ||||||||| Sbjct 39746402 CTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCTAGCGTGATGGT 39746343 Query 43151 TTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||| ||||| || ||||| ||| |||| ||||| Sbjct 39746342 TTTCCCCGTAAGGGTCTTCACAGAGATCTGCAT 39746310 >seq5 Length=117181667 Score = 104 bits (114), Expect = 3e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 60061 ATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCAC 60120 || |||||| || | ||||||||||||| ||||||||||||||||||||| |||||||| Sbjct 17923383 ATCTTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCAC 17923442 Query 60121 CACTATACTACCGAGGA 60137 |||||||||| |||||| Sbjct 17923443 CACTATACTAACGAGGA 17923459 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 17928224 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 17928283 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 17928284 ATACTAACGAGGA 17928296 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 17897881 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 17897822 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 17897821 TACTAACGAGGA 17897810 >seq3 Length=125065471 Score = 102 bits (112), Expect = 9e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||| Sbjct 68910762 TTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCAC 68910703 Query 60124 TATACTACCGAGGA 60137 ||||||| |||||| Sbjct 68910702 TATACTAACGAGGA 68910689 Score = 96.9 bits (106), Expect = 4e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||| || || || |||||||||| || || || | || ||||||||||| || || || Sbjct 62144638 CTCTTTCTGGATGTTGTAATCAGAGAGGGTGCGGCCATCTTCTAGCTGCTTGCCCGCAAA 62144579 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || | ||||||||| | || | || ||| || ||| ||| || || | | Sbjct 62144578 GATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCCTGGATCTTGGCCTTCACGTT 62144519 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | | ||||| || | ||||| || | |||||||| ||||| || || ||||| || Sbjct 62144518 CTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCAC 62144459 Query 43172 AAAGATTTGCATTTTTAC 43189 ||||| |||||||| || Sbjct 62144458 GAAGATCTGCATTTTGAC 62144441 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||| || || || |||||||||| ||||| || | || ||||||||||| || || || Sbjct 62144866 CTCTTTCTGGATGTTGTAATCAGAGAGAGTGCGGCCATCTTCTAGCTGCTTGCCGGCAAA 62144807 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || | ||||||||| | || | || ||| || ||| ||| || || | | Sbjct 62144806 GATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCCTGGATCTTGGCCTTCACATT 62144747 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | | ||||| || | ||||| || | |||||||| ||||| || || ||||| || Sbjct 62144746 CTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCAC 62144687 Query 43172 AAAGATTTGCAT 43183 ||||| ||||| Sbjct 62144686 GAAGATCTGCAT 62144675 >seq1 Length=198846266 Score = 102 bits (112), Expect = 9e-17 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 60062 TTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 60121 || ||||| || | ||||||||||||| ||||||||||||||||||||| ||||||||| Sbjct 173313980 TTGTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACC 173314039 Query 60122 ACTATACTACCGAGGA 60137 ||||||||| |||||| Sbjct 173314040 ACTATACTAACGAGGA 173314055 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 173424347 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 173424288 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 173424287 ATACTAACGAGGA 173424275 >seq15 Length=152823684 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 125103613 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 125103672 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 125103673 TACTAACGAGGA 125103684 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 125107083 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 125107142 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 125107143 TACTAACGAGGA 125107154 Score = 84.2 bits (92), Expect = 3e-11 Identities = 57/63 (90%), Gaps = 1/63 (2%) Strand=Plus/Plus Query 60076 GGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAG 60135 ||||||||||||| ||||||| | ||||||||||| |||||||||||||||||| |||| Sbjct 99104568 GGGAATCGAACCC-GGTCTCCTGTGTGACAGGCGGGGATACTCACCACTATACTAACGAG 99104626 Query 60136 GAT 60138 ||| Sbjct 99104627 GAT 99104629 >seq2 Length=131945496 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 92873256 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 92873315 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 92873316 TACTAACGAGGA 92873327 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 90476173 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 90476232 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 90476233 TACTAACGAGGA 90476244 >seq16 Length=150978388 Score = 96.9 bits (106), Expect = 4e-15 Identities = 134/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 43002 ATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGC 43061 || |||||||||| ||||| || | || ||||||||||| ||||| || || || | | Sbjct 58879370 ATGTTGTAATCAGAGAGAGTGCGGCCATCTTCTAGCTGCTTGCCAGCAAAGATCAGCCTC 58879429 Query 43062 TGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTG 43121 ||||||| | || | || ||| || ||| ||| || || | || | | ||| Sbjct 58879430 TGCTGGTAAGGGGGAATGCCCTCTTTATCCTGGATCTTGGCCTTCACGTTCTCTATGGTG 58879489 Query 43122 TCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGC 43181 || || | ||||| || | |||||||| ||||| || || ||||| | |||||| ||| Sbjct 58879490 TCACTGGGCTCCACCTCTAGGGTGATGGTCTTGCCGGTCAGGGTCTTCAGAAAGATCTGC 58879549 Query 43182 ATTTTTAC 43189 ||||| || Sbjct 58879550 ATTTTGAC 58879557 >seq18 Length=130317789 Score = 84.2 bits (92), Expect = 3e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 42971 CAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTC 43030 |||||||||||| | ||| |||||||||||| ||||| |||| || |||||| | || Sbjct 111279673 CAACACCAAATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTCCGGCCATC 111279732 Query 43031 ATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTC 43069 || |||||||||||||| || | || | |||||| || Sbjct 111279733 TTCCAGCTGCTTACCAGCAAAGACCAGCCTCTGCTGATC 111279771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571778973721120