Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26] 5,404 sequences; 2,625,587,472 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq17 89.7 8e-13 seq18 84.2 3e-11 >seq17 Length=136257712 Score = 89.7 bits (98), Expect = 8e-13 Identities = 104/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| | |||||| || |||| ||| | ||||| || ||| || || || || || || Sbjct 39746536 CCACCCCGAAGTCTCAACACCAGATGAAGGGTAGACTCCTTTTGA-ATGTTGTAGTCAGA 39746478 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | ||| | || ||| || | || || |||||||| |||| || |||||||| ||||| Sbjct 39746477 CAAAGTCCGGCCATCTTCCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGATCAGGAGG 39746418 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||||||| ||||| || Sbjct 39746417 AATTCCTTCCTTATCCTG 39746400 >seq18 Length=130317789 Score = 84.2 bits (92), Expect = 3e-11 Identities = 103/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| | |||||| || |||||||| | || || || ||| || || || || || || Sbjct 111279659 CCACCCCGAAGTCTCAACACCAAATGAAGGGTGGACTCCTTTTGA-ATGTTGTAGTCAGA 111279717 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | ||| | || ||| || | || || |||||||| | || || |||||||| ||||| Sbjct 111279718 CAAAGTCCGGCCATCTTCCAGCTGCTTACCAGCAAAGACCAGCCTCTGCTGATCAGGAGG 111279777 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||||||| ||||| || Sbjct 111279778 AATTCCTTCCTTATCCTG 111279795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743476174791680