Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26]
5,404 sequences; 2,625,587,472 total letters
Query= NC_002520.1
Length=232392
Score E
Sequences producing significant alignments: (Bits) Value
seq17 89.7 8e-13
seq18 84.2 3e-11
>seq17
Length=136257712
Score = 89.7 bits (98), Expect = 8e-13
Identities = 104/138 (75%), Gaps = 2/138 (1%)
Strand=Plus/Minus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109
||||| | |||||| || |||| ||| | ||||| || ||| || || || || || ||
Sbjct 39746536 CCACCCCGAAGTCTCAACACCAGATGAAGGGTAGACTCCTTTTGA-ATGTTGTAGTCAGA 39746478
Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169
| ||| | || ||| || | || || |||||||| |||| || |||||||| |||||
Sbjct 39746477 CAAAGTCCGGCCATCTTCCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGATCAGGAGG 39746418
Query 146170 AATTCCTTCTTTATCTTG 146187
||||||||| ||||| ||
Sbjct 39746417 AATTCCTTCCTTATCCTG 39746400
>seq18
Length=130317789
Score = 84.2 bits (92), Expect = 3e-11
Identities = 103/138 (75%), Gaps = 2/138 (1%)
Strand=Plus/Plus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109
||||| | |||||| || |||||||| | || || || ||| || || || || || ||
Sbjct 111279659 CCACCCCGAAGTCTCAACACCAAATGAAGGGTGGACTCCTTTTGA-ATGTTGTAGTCAGA 111279717
Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169
| ||| | || ||| || | || || |||||||| | || || |||||||| |||||
Sbjct 111279718 CAAAGTCCGGCCATCTTCCAGCTGCTTACCAGCAAAGACCAGCCTCTGCTGATCAGGAGG 111279777
Query 146170 AATTCCTTCTTTATCTTG 146187
||||||||| ||||| ||
Sbjct 111279778 AATTCCTTCCTTATCCTG 111279795
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 743476174791680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |