Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26] 5,404 sequences; 2,625,587,472 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq19 1065 0.0 seq11 140 2e-28 seq5 87.8 1e-12 >seq19 Length=126249303 Score = 1065 bits (1180), Expect = 0.0 Identities = 1144/1501 (76%), Gaps = 33/1501 (2%) Strand=Plus/Minus Query 107164 TATTTGTCTATAGAAGACATCTATCTTTACCATCAC---TCTGGAGTTGAACTTGATGTT 107220 ||||| || | |||||| |||| | | | |||||| | ||||||||||||||| || Sbjct 69704524 TATTTTTCCAGAGAAGAGATCTCT-TCTGCCATCAGAAGTTTGGAGTTGAACTTGACATT 69704466 Query 107221 -CTGGA-----------TTAGTTTGTAATTAAAGGCATTTTGTTCTGTCCAAGGATCTC- 107267 |||| ||||||| |||| | |||| |||||||| | || || | | Sbjct 69704465 TCTGGGATCCTGTTTCGTTAGTTTATAATCAGAGGCTCTTTGTTCTTTTCAGAGAACCCA 69704406 Query 107268 CTCCTCCACCTTGCCTGTGCCCAAACTCTCCTGATC-TCCCATCCCATGAAGATGGCTGG 107326 || | || ||| ||| || | || |||| ||| || |||||||| || Sbjct 69704405 CTGC-CCTCCTCTGCTGGGCG---AGGCT--TGATGGTCCTCGCCTGTGAAGATGACTTC 69704352 Query 107327 GTGGAAGAAGAAGCTTTGCCGGGGACATCATCTGTGGGCCCTGGGCTGCTATATGCTGCT 107386 ||| ||| | || ||| || ||| |||||| ||||||||||||| || || || Sbjct 69704351 CTGGCAGAGG---CTCTGCTGGCACTATCGCCTGTGGACCCTGGGCTGCTACATACTACT 69704295 Query 107387 GGCCGTTGTTTCTCTGAGACTTTCCCTCAGGTTTAAATGTGATGTAGATTCCTTGGATCT 107446 |||| | || | |||| ||| |||||||| | || ||||| | ||| || ||||||| Sbjct 69704294 GGCCATCCTTGCCCTGAAACTGTCCCTCAGACTGAAGTGTGACTTCGATGCCATGGATCT 69704235 Query 107447 GGAGTCCAGGGACTTCCAGAGTCAGCACTGTAGGGACATGTTGTACAATAGCCTGAAGCT 107506 ||| || ||| || || || ||| |||| ||||| | ||||||| | ||||||||| Sbjct 69704234 GGACTCTGAGGAATTTCAAAGCCAGTACTGCAGGGATCTCCTGTACAAGACCCTGAAGCT 69704175 Query 107507 GCCAGCAAAGAGATCCATCAACTGTTCTGGGATCACGCGAGGGGACCAGGAAGCAGTGGT 107566 |||||| ||||| ||||||||||| || ||| ||| |||||||| ||| |||| ||| Sbjct 69704174 GCCAGCCAAGAGTTCCATCAACTGCTCAGGGGTCATTCGAGGGGAGCAGAAAGCGGTGAC 69704115 Query 107567 CCAGGCCCTCCTAGACAACCTGGAAGTGAAGAAAAAGCGGTCGCCTCTCACTGGCACCTA 107626 |||||| || || | ||||||||| | ||||| |||| | || |||| | || | Sbjct 69704114 CCAGGCTCTGCTGAATAACCTGGAAATTAAGAAGAAGCAGCAGCTCTTCACAGAGGCCGA 69704055 Query 107627 TTACCTCAACATAACCAGAGACTGTGAGCGCTTCAAGGCCCAAAGGAAGTTCATACAGTT 107686 ||||| | || || ||||||||||| ||||||| || | |||||||| |||||| | Sbjct 69704054 CTACCTTAGGATGACAGCAGACTGTGAGCACTTCAAGACCAAGAGGAAGTTTATACAGGT 69703995 Query 107687 CCCACTGAGTAAAGAAGAG-CTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGA 107745 ||||||||| || |||||| | || |||||||||||| ||||| |||||||| ||||||| Sbjct 69703994 CCCACTGAGCAAGGAAGAGGCCAG-CTTCCCCATTGCGTACTCCATGGTGGTGCATGAGA 69703936 Query 107746 AGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTG 107805 ||||||| ||||| ||| || |||| ||||| ||||| ||||||||||| ||||||||| Sbjct 69703935 AGATTGAGAACTTCGAAAGGTTGCTTCGAGCTGTGTACACCCCTCAGAACGTATACTGTG 69703876 Query 107806 TCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCT 107865 ||||||||||| |||||| |||| | || || |||| |||| |||||| | || | Sbjct 69703875 TCCACGTGGATCAGAAGTCTTCAGAACCCTTTAAGCAGGCAGTCAGGGCCATCGTGTCAT 69703816 Query 107866 GCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCA 107925 ||||||||||||||||||| || ||||||||||| | ||||| ||||| |||||||||| Sbjct 69703815 GCTTCCCCAATGTCTTCATAGCTAGTAAGTTGGTGTCAGTGGTCTATGCTTCCTGGTCCA 69703756 Query 107926 GAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAAGT 107985 | ||||| |||||||| ||||| ||||||||||| || |||| | | ||||||||||| | Sbjct 69703755 GGGTGCAGGCTGACCTAAACTGCATGGAAGACTTACTTCAGACCCCCGTGCCATGGAAAT 69703696 Query 107986 ACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGG 108045 || | ||||| || || ||||| ||||| ||||| || |||||||| ||||||||| || Sbjct 69703695 ACCTCCTGAACACCTGTGGGACGGACTTTCCCATCAAAACCAATGCTGAGATGGTCAAGG 69703636 Query 108046 CCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaa 108105 |||||||| | ||||| || |||||||||||||||| |||||||| || || || Sbjct 69703635 CCCTCAAGCTATTGAAAGGGCAGAACAGTATGGAGTCAGAGGTACCACCTCCA--CATAA 69703578 Query 108106 aaaaTC--GCTGGAAATACCGCTATGAGGTGACAGACACACTGTACCCTACCAGCAAGAT 108163 |||||| |||||||||| | ||||||||||||||||||| || || |||||||||| Sbjct 69703577 AAAATCCCGCTGGAAATATCACTATGAGGTGACAGACACATTGCACATGACCAGCAAGAG 69703518 Query 108164 GAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGCCTC 108223 |||| || || ||| |||| || |||||||||| ||||||||||| | ||||| || Sbjct 69703517 GAAGACGCCGCCACCTAATAACCTAACCATGTTCACTGGGAATGCCTACATGGTGGCTTC 69703458 Query 108224 TCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTGAATGGGT 108283 ||||| ||| | |||| || || ||| | ||| ||| |||| | |||||||| Sbjct 69703457 TCGAGACTTCATTGAACACGTGTTTAGTAACTCAAAAGCCCGGCAACTGATCGAATGGGT 69703398 Query 108284 CAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCTCCGTGGAT 108343 |||||||||||||| ||||| || ||||| ||||||||||| |||||||| ||||||| Sbjct 69703397 AAAAGACACCTATAGTCCCGATGAGCACCTTTGGGCCACCCTCCAGCGTGCCTCGTGGAT 69703338 Query 108344 GCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCCAG 108403 |||||| || | ||| || | || | | || | |||||||||| ||||| || || Sbjct 69703337 GCCTGGATCAGATCCCTTGCATCGAAAATTTGACCTGTCAGACATGAGAGCCATTGCAAG 69703278 Query 108404 GCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGCACCCTG 108463 || ||||||| | |||||||||||||| | | ||||| ||||| | | || Sbjct 69703277 ACTAACCAAGTGGTATGACCACGAGGGAGATATTGAGAACGGGGCACCTTACACGTCTTG 69703218 Query 108464 CTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGGATTCT 108523 ||| |||||||| | | |||| |||| |||| ||| | ||||||||| ||||||| || Sbjct 69703217 CTCAGGAATCCACCAGCGGGCTGTCTGTGTTTATGGGTCAGGGGACCTGCACTGGATACT 69703158 Query 108524 CCAGAACCATCACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATGATAACGTCCTGCA 108583 |||||||||||||||||||| |||||||||||||| | |||||||||||| || || || Sbjct 69703157 TCAGAACCATCACCTCTTGGCCAACAAGTTTGACCCAAAGGTGGATGATAATGTTCTTCA 69703098 Query 108584 GTGCTTAGAAGAGTACCTACGTCATAAGGCCATCTATGGGACTGAACTTTGAGCTGCACT 108643 ||| |||||||| || ||||||| || |||||||||||||||||||| |||| |||| Sbjct 69703097 GTGTTTAGAAGAATATTTACGTCACAAAGCCATCTATGGGACTGAACTATGAGACACACT 69703038 Query 108644 G 108644 | Sbjct 69703037 G 69703037 >seq11 Length=59623150 Score = 140 bits (154), Expect = 2e-28 Identities = 582/897 (65%), Gaps = 51/897 (6%) Strand=Plus/Minus Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || || | |||||||||| ||| ||| || ||||| || || || ||||| ||| | ||| Sbjct 14063606 CCCCTTACTAAAGAAGAGGTAGGCTTTCCAATTGCATATTCCATTGTGGTTCATCATAAG 14063547 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 ||||||| |||| |||| ||| | ||| | ||| |||||||| | ||||| | Sbjct 14063546 ATTGAAATGCTTGACAGGCTCCTGAGGGCCATCTATATGCCTCAGAATTTCTACTGCATT 14063487 Query 107808 CACGTGGAT-GTGAAGTCCCCAGAGA---CTTTCAAAGAGGCGGTCAAGGCCATTATTTC 107863 |||||||| | ||| ||||| | || || ||||| ||| ||| || Sbjct 14063486 CACGTGGACAGAAAAG----CAGAGGAATCCTTTTTAGCCGCGGTGCAGGGCATCGCATC 14063431 Query 107864 CTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTC 107923 |||||| |||||||| ||||||| |||||| || |||||||| |||||| Sbjct 14063430 CTGCTTTGATAATGTCTTTGTGGCCAGCCAGTTGGAGAGTGTTGTTTATGCGTCCTGGAG 14063371 Query 107924 CAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCA--TGG 107981 | || | || ||||| ||||| ||| | ||| || | |||| | | ||| | ||| Sbjct 14063370 TCGGGTTAAGGCAGACCTCAACTGCATGAAGGACCTG-TACAGAA-TGAATGCAAACTGG 14063313 Query 107982 AAGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTC 108041 |||||||| | ||| || || | || ||||| || || ||||| || || ||| Sbjct 14063312 AAGTACTTGATCAATCTCTGTGGTATGGATTTCCCTATTAAAACCAACCTGGAAATTGTC 14063253 Query 108042 CTGGCCCTCAAGATGTTGA-AGGGTAAGAACAGTATGGAGTCTGAGG---TACCTTCTGA 108097 | |||||| | | |||| || |||| |||| ||||| | ||| | | Sbjct 14063252 AGGAAGCTCAAGTACTCCACAGGGGAA-AACAACCTGGAAACTGAGAAGATGCCTCCCAA 14063194 Query 108098 GTCCaaaaaaaaTCGCTGGAAATA--------CCGCTAT-GAGGTGA--CAGAC--ACAC 108144 ||| || | | |||||| | ||| | | || | || | ||| |||| Sbjct 14063193 ---CAAGGAAGAGAGATGGAAAAAAAGATACACCGTTGTCGATGGGAAGCTGACCAACAC 14063137 Query 108145 TGTACCCTACCAGCAAGATGAAGGACCCTCCCC-CTGATAATTTACCCATGTTCACAGGG 108203 || | || ||| ||| |||| |||| || | || | || |||| Sbjct 14063136 TGGAAT---------AGTCAAAGCACCGCCCCCACTGAAAACT--CCTCTCTTTTCAGGC 14063088 Query 108204 AATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAA-ATC 108262 | |||||| || |||| | || | | | ||| | || | || || || || Sbjct 14063087 AGTGCCTACTTCGTGGTCACTAGGGAATATGTAGGCTACGTGCTGGAAAATGAAAATATT 14063028 Query 108263 CCAAAGACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCAC 108322 | |||| || | ||||||| | ||||| || ||||| || || |||||||||||| Sbjct 14063027 CAAAAGT-TGATGGAATGGGCACAGGACACATACAGCCCAGATGAGTTCCTCTGGGCCAC 14062969 Query 108323 CCTTCAGCGTGCTCCGTGGA-TGCCTGGCTCTGTTCCTAGCCACCC-CAAGTATCACATC 108380 | | || | | ||| | | | ||||| ||| |||| | | | ||||||| || | Sbjct 14062968 CATCCAAAG-GATCCCAGAAGTCCCTGGTTCT-TTCCCCTCAAGCAACAAGTATGACTTG 14062911 Query 108381 TCAGACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGC 108440 |||||||||| |||||| || ||| | ||||||||||||||| ||| || |||| | Sbjct 14062910 TCAGACATGAATGCCATTGCTAGGTTTGTCAAGTGGCAGTACTTCGAAGGCCATGTTTCC 14062851 Query 108441 ATGGGGGCGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGG 108500 | || || |||||| |||| ||| |||| |||| | | | | ||| | | ||| Sbjct 14062850 AACGGTGCCCCTTATCCACCGTGCAGTGGAGTCCACGTGCGCTCTGTGTGCGTCTTCGGA 14062791 Query 108501 GCCGGGGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557 || || ||| || |||||| || | | || ||||| || || || ||||||||| Sbjct 14062790 GCTGGTGACTTGAGCTGGATGCTGCGCCAACACCACCTTTTTGCCAATAAGTTTGAC 14062734 >seq5 Length=117181667 Score = 87.8 bits (96), Expect = 1e-12 Identities = 236/354 (67%), Gaps = 24/354 (7%) Strand=Plus/Plus Query 107730 ATGGTGGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGT--ATGCCC 107787 ||||| ||||| | || |||| | ||||| | |||| | |||| | | ||||| Sbjct 37342287 ATGGTCATCCATCACAATTTTGATACCTTTGCAAGGCTCTTCAGAGCAATCTTCATGCC- 37342345 Query 107788 CTCAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGG 107847 ||| || || |||||||| |||||||||| ||| | ||| ||||||| || | Sbjct 37342346 -TCAAAATATCTACTGTGTTCACGTGGATGAAAAGGCAACAGCTGAATTCAAAGGTGCCG 37342404 Query 107848 TCAAGGCCATTATTTC-CTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTG 107906 | | | ||| | |||||||||||||| ||| |||| |||| ||| |||||| Sbjct 37342405 TGGAA-CAGTTAGTGAGCTGCTTCCCCAATGCCTTTCTGGCTTCTAAGATGGAGCCGGTG 37342463 Query 107907 GTTTATGCCTCCTGG----TCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTG-- 107960 || |||| ||| ||| | | || |||||||||||||| || ||||| || Sbjct 37342464 GTCTATG----GTGGAATCTCCCGGCTCCAGGCTGACCTGAACTGCATCAAAGACCTGTC 37342519 Query 107961 ---CTCCAGAGCTCAGTGCCATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCC 108017 |||| ||| || || ||||||||| | || || || || |||||||||| Sbjct 37342520 AACCTCC-GAG----GTCCCCTGGAAGTACGCCATCAACACCTGTGGACAAGACTTCCCC 37342574 Query 108018 ATAAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAAC 108071 | || ||||| ||||| || | | ||| || | | ||||| |||||| Sbjct 37342575 CTGAAAACCAACAAGGAGATAGTTCAGTACCTGAAAGGGCTTAAGGGGAAGAAC 37342628 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348245862581496