Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26] 5,404 sequences; 2,625,587,472 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq18 345 3e-90 seq15 86.0 5e-12 >seq18 Length=130317789 Score = 345 bits (382), Expect = 3e-90 Identities = 557/798 (70%), Gaps = 2/798 (0%) Strand=Plus/Plus Query 19978 GATCGAACCGGAACTGGAACGTTATCTGTATTTGGAATGCAATCTCGATATAACTTGAGA 20037 || || ||||| || || || | || || || || ||||| | ||||| | | ||||| Sbjct 85150882 GACCGCACCGGCACAGGCACCCTGTCGGTGTTCGGCATGCAGGCACGATACAGCCTGAGA 85150941 Query 20038 AATGAATTTCCCTTATTAACTACGAAACGGGTATTTTGGAAAGGCGTTGTTGAAGAGTTA 20097 |||||||||| | | || || ||||| || || ||||| || ||| | || ||||| Sbjct 85150942 GATGAATTTCCTCTGCTCACAACCAAACGAGTGTTCTGGAAGGGTGTTTTGGAGGAGTTG 85151001 Query 20098 TTATGGTTTATTAAAGGATCAACAAATTCTACCGAGCTTGTAGAAAAAGG-AGTTAAGAT 20156 || |||||||| || ||||| |||||| ||| || |||| |||| ||| | || Sbjct 85151002 TTGTGGTTTATCAAGGGATCCACAAATGCTAAAGAA-TTGTCCTCCAAGGGAGTGAGAAT 85151060 Query 20157 TTGGAGCGCACATGGATCTAAGCAATTTTTACACAGCAATGGATTTGACAACCGTCAAGA 20216 ||| || ||||||| | ||| | ||||| |||||| ||| || | Sbjct 85151061 CTGGGATGCCAATGGATCCCGAGACTTTCTGGACAGCTTGGGATTTTCTGCCCGACAGAA 85151120 Query 20217 GGGGGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATGTTGA 20276 ||||| |||| || || ||||| || |||||||| ||||||||||| || || || Sbjct 85151121 AGGGGACCTGGGCCCAGTTTATGGTTTCCAATGGAGGCATTTTGGAGCAGAGTACAAAGA 85151180 Query 20277 CATGAACACAAATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAATTTAAT 20336 ||| | || |||| |||||||||||||| || | ||||| | ||| | || Sbjct 85151181 TATGGATTCAGATTACCCGGGACAAGGAGTAGACCAGCTGCAAAAAATGATTGACACCAT 85151240 Query 20337 TAAAACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGATGTGCC 20396 ||||| ||||| | ||||||||||| || | || ||||||||| | |||||| | || Sbjct 85151241 CAAAACCAACCCTGATGACAGAAGAATCATCATGTGTGCCTGGAACCCAAAAGATCTTCC 85151300 Query 20397 TTTAATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAATAATGAATT 20456 | ||||| ||||||| || ||| || || || || || || | ||| || | Sbjct 85151301 CCTGATGGCACTGCCTCCTTGCCATGCCCTCTGTCAGTTCTATGTGGTGAATGGGGAGCT 85151360 Query 20457 GTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTGC 20516 ||| || ||| | || || | || | |||||||| ||||| || |||||||| ||||| Sbjct 85151361 GTCTTGCCAACTTTACCAGAGGTCAGGAGATATGGGTCTGGGCGTGCCTTTCAACATTGC 85151420 Query 20517 AAGTTATGCGCTGCTTACGTATATGATTGCACATGTTACAGATTTAAAAACGGGTGACTT 20576 || ||||| ||||| || || |||||||||||| | |||| | | | | ||||| || Sbjct 85151421 CAGCTATGCTCTGCTCACCTACATGATTGCACATATCACAGGTCTGCAGCCAGGTGATTT 85151480 Query 20577 AGTCCACACCATAGGAGACGCGCATATTTACCTTAATCATATAGAACCTTTAAAATTACA 20636 |||||||| | ||||| || ||||||||||| ||||||||||| || | ||| | || Sbjct 85151481 TGTCCACACTTTGGGAGATGCACATATTTACCTGAATCATATAGAGCCGCTGAAAATTCA 85151540 Query 20637 GTTAACACGACAACCAAAACAATTCCCAACTCTTCGCATTACTCGAACTGTTAAAGATAT 20696 | || ||| |||||| || ||||||| || || ||||| ||| | || Sbjct 85151541 GCTACAGCGAGAACCAAGACCTTTCCCAAAGCTCAAAATCCTTCGAAAAGTTGAGACAAT 85151600 Query 20697 TAACGATTTTAAAGCTGATGATTTTGTGTTAGAAGGTTATAATCCCCATAATTCAATTCC 20756 | ||||| |||| ||| || ||| | | ||||| |||||||| ||| | ||| Sbjct 85151601 CGATGATTTCAAAGTTGAAGACTTTCAGATTGAAGGGTATAATCCACATCCAACGATTAA 85151660 Query 20757 AATGGAAATGTCTGTTTA 20774 |||||||||| ||||||| Sbjct 85151661 AATGGAAATGGCTGTTTA 85151678 >seq15 Length=152823684 Score = 86.0 bits (94), Expect = 5e-12 Identities = 121/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 20388 AGATGTGCCTTTAATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAA 20447 |||| | || | ||||| ||||||| || ||| || || || || || || | || Sbjct 27100278 AGATCTTCCCCTGATGGCACTGCCTCCTTGCCATGCCCTCTGTCAGTTCTATGTGGTGAA 27100219 Query 20448 TAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTT 20507 | || |||| || || | || || | || | |||||||| ||||| || ||||| Sbjct 27100218 TGGGGAGCTGTCTTGCCAGCTTTACCAGAGGTCAGGAGATATGGGTCTGGGCGTGCCTTT 27100159 Query 20508 CAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACATGTTACAG 20557 ||| ||||| || ||||| ||||| || || |||||||||||| | |||| Sbjct 27100158 CAACATTGCCAGCTATGCTCTGCTCACCTACATGATTGCACATATCACAG 27100109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399157709242780