Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26] 5,404 sequences; 2,625,587,472 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq3 109 4e-19 seq15 104 2e-17 seq10 102 6e-17 seq20 82.4 6e-11 >seq3 Length=125065471 Score = 109 bits (120), Expect = 4e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||||| ||| ||| ||||| |||||||| || ||| | | | || || Sbjct 98064610 ACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAATCAGACAGGGTGTGGCCATCCTCT 98064669 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || ||||| ||||||||||||| || ||| ||||| || || | ||||||||||| Sbjct 98064670 AGCTGTTTGCCGGCGAATATCAGCCTCTGCTGGTCAGGTGGGAGGCCCTCCTTGTCTTGG 98064729 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | |||| | ||| ||||| | || || |||||| Sbjct 98064730 ATCTTGGCCTTTACATTCTCGATGGTGTCACTGGGCTCTACCTCAAGAGTGATGGTCTTG 98064789 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340 ||| |||| |||||||| ||||| ||||||||| Sbjct 98064790 CCCATCAGGGTCTTCACGAAGATCTGCATGTTG 98064822 Score = 102 bits (112), Expect = 6e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||| |||| | | |||| |||||| || ||| ||||| |||||||| || Sbjct 62144902 GCCACCCCTCAGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGA 62144843 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || ||| | || || || || || ||||| || |||| || ||| ||||| || || Sbjct 62144842 GAGAGTGCGGCCATCTTCTAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGG 62144783 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | ||||| || ||| || || ||| || | | | | |||| | |||||| Sbjct 62144782 GATGCCCTCTTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCAC 62144723 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 ||||| ||| || |||||||| ||||| |||||||| ||||| |||||| Sbjct 62144722 CTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATG 62144674 Score = 98.7 bits (108), Expect = 8e-16 Identities = 161/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||| |||| | | |||| |||||| || ||| ||||| |||||||| || Sbjct 62144674 GCCACCCCTCAGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGA 62144615 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || ||| | || || || || || || || || |||| || ||| ||||| || || Sbjct 62144614 GAGGGTGCGGCCATCTTCTAGCTGCTTGCCCGCAAAGATCAGCCTCTGCTGGTCAGGGGG 62144555 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | ||||| || ||| || || ||| || | | | | |||| | |||||| Sbjct 62144554 GATGCCCTCTTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCAC 62144495 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340 ||||| ||| || |||||||| ||||| |||||||| ||||| ||||| ||| Sbjct 62144494 CTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATTTTG 62144443 >seq15 Length=152823684 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||| | | | |||| |||||| ||| ||| ||||| |||||||| || | Sbjct 125084945 CCACCTCTGAGGCGAAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCTGAC 125085004 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| | || ||||| || || || || || |||| || ||| ||||| || || Sbjct 125085005 AGGGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 125085064 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | |||||||||||| || ||| ||| || | | | | |||| | ||| ||| Sbjct 125085065 ATGCCCTCCTTGTCCTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACC 125085124 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| ||| || ||||| || || | || ||||||||||| ||||| Sbjct 125085125 TCCAGGGTGATGGTCTTACCAGTTAAGGTTTTCACAAAGATCTGCAT 125085171 >seq10 Length=90668104 Score = 102 bits (112), Expect = 6e-17 Identities = 140/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||||| ||| ||| ||||| |||||||||||| ||| ||| | || ||| Sbjct 33660468 ACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCC 33660527 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || ||||| || | |||||||| || ||| ||||| ||||| | || |||||||| Sbjct 33660528 AGCTGTTTGCCCGAGAATATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGG 33660587 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | |||| | ||| ||||| | || || |||||| Sbjct 33660588 ATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCAAGAGTGATGGTCTTG 33660647 Query 45308 CCCGTCAGAGTCTTCA 45323 |||||||| ||||||| Sbjct 33660648 CCCGTCAGGGTCTTCA 33660663 >seq20 Length=148322235 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/214 (70%), Gaps = 3/214 (1%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTC-GTTCAGTTGGCGATCGTCGTC 45186 |||| |||||| || ||| ||||| |||||||| || | || || || | || || Sbjct 135500346 ACCAGGTGCAGGGTCAACTCTTTCTGGATGTTGTAATCAGAGAAGGTG-CGGCCATCTTC 135500404 Query 45187 CAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGC 45246 |||||| || || || || || | || ||| |||||||| | | ||||| || ||| Sbjct 135500405 CAGTTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGTG-ATGCCCTCTTTATCCTG 135500463 Query 45247 AATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTT 45306 || || ||| || | | | | | || | ||||| ||| | ||| || ||||| Sbjct 135500464 GATCTTGGCCTTCACATTCTCGATGGTTTCACTGGGCTCCATCTCTAGGGTGATGGTCTT 135500523 Query 45307 GCCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340 ||| ||||| |||||| | ||||||||||| ||| Sbjct 135500524 GCCAGTCAGGGTCTTCTCGAAGATTTGCATTTTG 135500557 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395049179853484