Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26] 5,404 sequences; 2,625,587,472 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq3385 288 1e-72 seq14 167 2e-36 seq17 165 8e-36 seq7 102 8e-17 seq4 102 8e-17 >seq3385 Length=62036 Score = 288 bits (318), Expect = 1e-72 Identities = 602/883 (68%), Gaps = 23/883 (3%) Strand=Plus/Minus Query 13916 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13975 ||||| ||| ||||| ||| |||||||| || ||||| ||||| | ||| || || ||| Sbjct 20947 TGATACTCAGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAATGAAATGTTCTCC 20888 Query 13976 ATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAA-CCTAGTTCTAATAGTAA 14034 ||||||||||| |||||| || | ||| | || | | || || ||||||| ||||| Sbjct 20887 ATAAAATCAAAGGGATTTTCTGCCTGAAAAATCTT-TGAGAATCCAAGTTCTATAAGTAA 20829 Query 14035 TCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTT 14094 ||| || || | |||||||| || || | | ||| || | || || || || || Sbjct 20828 TCTGTCAGCTACAAACTCAATGTACTGTTTCGTCAAAACATAGTTAATTCCAATGAGGCC 20769 Query 14095 TACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAAT 14154 ||||| | | |||||||| || | || || ||||| || || || Sbjct 20768 AACAGGCAAGGCTTCTGTTAAAAACTCCTGCTCAATTTGAACAGCATCAGCAATGATTTC 20709 Query 14155 CGTAATAATTTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATC 14214 | | | | || | ||||| || || | ||| || | || ||||| || Sbjct 20708 CCTCACTCTGTCTTCTGAAGGC-----TTGTAC----TGAAACATCAGGCAGGCAAAGTC 20658 Query 14215 ACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAA 14274 ||| ||||| || ||||| || || || ||||| |||||||| || | | | ||||| | Sbjct 20657 ACAGTGAAGACCTTCATCCCTGCTGATCAGTTCATTTGAAAAAGTCAGTTCAGGCATGAG 20598 Query 14275 TCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAAC 14334 |||| || |||| ||| ||||||||||| |||||||| || ||| | ||||| || || Sbjct 20597 GCCTCTCTTCTTTAGCCAGAATATTGCAGCAAATGATCCAGAGAAGGAAATTCCTTCCAC 20538 Query 14335 TGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCT 14394 |||||||| || | | || ||| ||||| | | ||| | | | |||||| Sbjct 20537 AGCAGCAAAGGCCACCACTCTTTCCCCAAAAGTAGATTTCCTATCTGCTATCCAGCGCAG 20478 Query 14395 AGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATGTT- 14453 |||||| || | |||||| |||| | | |||||||||||| || ||||||||| || Sbjct 20477 AGCCCAGTCCGCTTTTTTCTTAACATATGGCATTGTTTCAATTGCGTTAAATAAAAATTC 20418 Query 14454 CCTTCTCTTTAGTACT-TGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGT 14512 |||| ||||| | || || ||||| || || || ||||| || ||||| || ||||| Sbjct 20417 CCTTTTCTTTGGATCTCTG--ATGTAAGTGTCTATTAGTAAACTGTACATCTCTGAGTGA 20360 Query 14513 ATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAG-CTTCTGACCATTGTACCT- 14570 | || || || |||||||| ||||| || || || || | || | || |||| Sbjct 20359 ACATTCTCGATGAGAATCTGAAAGCCATAGAAGCAGTGAGTCTCCGGAAC-CTGCACCTC 20301 Query 14571 CTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATG 14630 |||| ||||| | || |||| |||||||| || || |||||||| ||||||||||| | Sbjct 20300 CTGACTAAAA-CGCTCCACCAAGTTTTCATTTACAATTCCATCACTGGCTGCAAAAAAGG 20242 Query 14631 CCAATATGTTTTTAATAAAGTATTGCTCTTC--ATTGCTGAGTTTTTTCCAATCGGCTAA 14688 | || |||| |||||||| | ||| || ||| | || || ||||| | | | Sbjct 20241 CTAAGATGTGGGAGATAAAGTACTTCTCGTCGGATT--TAAGCTTGTTCCAGTGAGGGAG 20184 Query 14689 ATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCTTTTTTATACAT 14748 ||||| || | || || || || ||||||| ||| || |||| |||||||| Sbjct 20183 GTCCTTTGACAAGTCAACCTCTTCTTCTGTCCAGAAAGATGCCCGTGCTTGCTTATACAT 20124 Query 14749 TACCCATATTTCTTTATATAATATAGGAAAAACTACAAATCTT 14791 | ||| || || ||| || ||||| | ||||| ||| Sbjct 20123 TCTCCAGATATCAGGATACTGGATTGGAAAGATGACAAACCTT 20081 Score = 114 bits (126), Expect = 1e-20 Identities = 258/385 (67%), Gaps = 11/385 (3%) Strand=Plus/Minus Query 13916 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13975 ||||| ||| ||||| ||| |||||||| || ||||| ||||| | ||| || || ||| Sbjct 21489 TGATACTCAGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAATGAAATGTTCTCC 21430 Query 13976 ATAAAATCAAATGGATTTGTTGACATAAACA-CTTTATCACAACCTAGTTCTAATAGTAA 14034 ||||||||||| |||||| || | ||| | |||| | | || ||||||| ||||| Sbjct 21429 ATAAAATCAAAGGGATTTTCTGCCTGAAAAATCTTTGAGA-ATCCAAGTTCTATAAGTAA 21371 Query 14035 TCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTT 14094 ||| || || | |||||||| || || | | ||| || | || || || || || Sbjct 21370 TCTGTCAGCTACAAACTCAATGTACTGTTTCGTCAAAACATAGTTAATTCCAATGAGGCC 21311 Query 14095 TACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAAT 14154 ||||| | | |||||||| || | || || ||||| || || || Sbjct 21310 AACAGGCAAGGCTTCTGTTAAAAACTCCTGCTCAATTTGAACAGCATCAGCAATGATTTC 21251 Query 14155 CGTAATAATTTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATC 14214 | | | | || | ||||| || || | ||| || | || ||||| || Sbjct 21250 CCTCACTCTGTCTTCTGAAGG-----CTTGTA----CTGAAACATCAGGCAGGCAAAGTC 21200 Query 14215 ACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAA 14274 ||| ||||| || ||||| || || || ||||| |||||||| || | | | ||||| | Sbjct 21199 ACAGTGAAGACCTTCATCCCTGCTGATCAGTTCATTTGAAAAAGTCAGTTCAGGCATGAG 21140 Query 14275 TCCTCGtttttttAACCAAAATATT 14299 |||| || |||| ||| |||||| Sbjct 21139 GCCTCTCTTCTTTAGCCAGAATATT 21115 >seq14 Length=152946536 Score = 167 bits (184), Expect = 2e-36 Identities = 578/887 (65%), Gaps = 26/887 (3%) Strand=Plus/Plus Query 13901 ATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCC 13960 || |||||||| ||||| || | |||| || ||||||||||| || || ||||| Sbjct 69609728 ATGACGCCCATCCACTGATACTCGCCTACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCT 69609787 Query 13961 AGTGATATATTTTCCATAAAATCAAATGGATTTGTTGA-CATAAACACTTTATCACAACC 14019 | ||| ||||||||||| || |||||||||||| | | ||| | || | | |||| Sbjct 69609788 AATGAAATATTTTCCATGAAGTCAAATGGATTTCCTACTCCGAAAAATCTTGTTAAAACC 69609847 Query 14020 TAGTTCTAATAGTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATT 14079 || || | | | ||||| || | || ||||| || || ||| ||| || || Sbjct 69609848 CAGCTCCAGCATAAGCCTATCGGCCACAAATTCAATGTACTGCTTCATCAAAGTGCAGTT 69609907 Query 14080 CATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGC 14139 ||| | || || | ||||| | | | | | | | ||||| | | | Sbjct 69609908 CATCTCGATGAGCATCACAGGCAAGGCCTCCATGAGGATCCCCTGCTCTATC--CCTAAC 69609965 Query 14140 CTCGTTTATAATAATCG-TAATAATTTCATTAGAAGGAGGATATTTTAGATGTTTAAAAA 14198 |||||| | || || | || | | || || || | | || || || || | Sbjct 69609966 CTCGTTGGTGATTATTTCTTTTACTCTGCTTCGATGGCTTGTGTACCAGGTGCTTGAACA 69610025 Query 14199 TTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATG 14258 | | | |||| || || || | |||| ||||| |||||||| || || ||||||| Sbjct 69610026 TCAGGTAGACAAAGTCCCAGTGTAAACCCTAGTCTCTGCTAATAAGCTCATTGGAAAATG 69610085 Query 14259 TTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAA 14318 | || ||||||| || |||| || | ||| ||||| | || || || || |||| Sbjct 69610086 TAGGGCCCGGCATCAGCCCCTGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAA 69610145 Query 14319 A-GAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTG 14377 | ||| ||| | || || | ||||| || | | ||||||| || | | ||| |||| Sbjct 69610146 AAGAAGATTGCTTCTACCGTGGCAAAGGCCACAACTCGTTCTGCATATGTAACTTCTTTG 69610205 Query 14378 TTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATA 14437 | | |||| | ||||| |||| || | | | ||||||||||||| Sbjct 69610206 TCCCCAGTCCAATGCAAGGCCCAGTCAGCCTTCTC-------ACAGGCATTGTTTCAATA 69610258 Query 14438 GCATTAAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTA 14497 ||||| || | || ||| | ||||| | | | |||||| | |||||||| | || Sbjct 69610259 GCATTGAAAAGATATTCTCTTTCTTTGGGATCTTTAATGTAAATGTCAATAAGGAGACTG 69610318 Query 14498 TACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCT 14557 ||||||| ||||||||| ||||| | | | | || |||| |||||||| ||| ||| Sbjct 69610319 TACATTTTAGAGTGTATCCTTTCCCTGCCAGTTTAGAAGCCAT-AAAACATCCAGCCTCT 69610377 Query 14558 GACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTA 14617 | ||| || ||| | ||||| || |||| ||| | || | ||| |||||||| Sbjct 69610378 GTAACTTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTGCGTTGAGTATGCCATCACTC 69610437 Query 14618 GCTGCAAAAAATGCC--AATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTTTTT 14675 |||||||| || ||| || ||| | ||||| ||| || ||||| | ||| || Sbjct 69610438 GCTGCAAAGAAAGCCAGAACATGAGCT--ATAAA--ATTTCT-GTCATT-CAGAG--CTT 69610489 Query 14676 TCCAATCGGCT-AAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACA 14734 ||| | ||| | ||||| ||||| || || || ||| | |||||||| | || || Sbjct 69610490 CCCAGT--GCTGATCTCCTTGGAAAGGTCCACCTCCTCATCAGTCCAAAAGGTGGCCTCA 69610547 Query 14735 GCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAAC 14781 ||||| || ||||| ||| || || | || | || ||||| || Sbjct 69610548 GCTTTCTTGTACATCTGCCAGATATCATGGTACTAGATGGGAAAGAC 69610594 >seq17 Length=136257712 Score = 165 bits (182), Expect = 8e-36 Identities = 582/903 (64%), Gaps = 27/903 (3%) Strand=Plus/Plus Query 13895 TTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTA 13954 || || || || ||||| | ||||| || | ||| || |||||||||| ||||| Sbjct 93987391 TTCGACATGACTCCCATCCTCTGATACTCGCCTACTTGCTTCTCAAAGAAGTCTGTTTTT 93987450 Query 13955 CCTTCCAGTGATATATTTTCCATAAAATCAAATGGATTTGTTGACATAAACACTTTATCA 14014 ||||| ||||| ||||||||||| || |||||||||||| | | || | || | | Sbjct 93987451 CCTTCTAGTGAAATATTTTCCATGAAGTCAAATGGATTTTCTACTCTGAAAATCTTCTTA 93987510 Query 14015 CAACCTAGTTCTAATAGTAATCTATCCGC-AATGAACTCAATATATTGAGACATTAAATC 14073 ||| || || | | | | || || || || || ||||| || || ||| ||| Sbjct 93987511 ACACCCAGCTCCAGTGGAAGCCTGTCAGCCAAAAAATTCAATGTACTGCTTCATCAAAGT 93987570 Query 14074 ACAATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGA 14133 |||||| || | || || ||||| | | || | ||| || | |||| Sbjct 93987571 GCAATTCGCCCCGAAGAGCTTCACAGGCAAAGCCTCCGTGAGAAACTCCTGCCCTATCCT 93987630 Query 14134 CACAGCCTCGTT--TATAATAATCGTAATAATTTCATTAGAAGGAGGATATTTTAGATGT 14191 |||| | | | | || | | || | || | | | || | | || || Sbjct 93987631 AACAGTGTTGGTGTTTTATTTCTTTTACTGTTTGCTCCA-ATGGCTTGTGTACCAGGTGC 93987689 Query 14192 TTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTT 14251 || || || | || ||| | || || || | ||||| ||||| ||||||| || || Sbjct 93987690 TTGAACATCAGCCAGGCAGAGTCCCAGTGTAAACCCTCGTCTCTGCTAATAAACTCATTG 93987749 Query 14252 GAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGAT 14311 |||| ||| | || ||||| || || || || | ||| ||||| | || Sbjct 93987750 GAAAGTGTAAGGCCCAACATCAGTCTGCGATTCTTGAGCCAGAATATCGATGC------- 93987802 Query 14312 CCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCT 14371 |||||| | ||| || || |||||||| || | | || ||||||| | || | Sbjct 93987803 -----AAAGAAGACTCCTTCCACCGCAGCAAAGGCCACAACTCATTCTCCATATGAGGAC 93987857 Query 14372 TTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAA---AATCCATT 14428 | ||||| | |||| ||||| |||| || || || | | || |||| Sbjct 93987858 TCTTTGTCCCCAGTCCAACGCAAGGCCCAGTCAGCCTTCTTCTTCTTCACACAAGGCATT 93987917 Query 14429 GTTTCAATAGCATTAAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATA 14488 |||| ||||||||| || | || ||| | || || | | | |||||| || |||||| Sbjct 93987918 GTTTAAATAGCATTGAAGAGATATTCTCTTTCCTTGGGATCTTTAATGTACGTGTCAATA 93987977 Query 14489 AGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACAT 14548 || || |||||||||||||||||||||||||| || | || || ||||| ||||| Sbjct 93987978 AGGGGACTGTACATTTCAGAGTGTATGTTTTCCATGGCAGTTTGGAAGCCATAGAAACAG 93988037 Query 14549 CTAGCTTCTGACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATA 14608 | || |||| ||| || ||| | ||||| || |||| |||||||| ||||| Sbjct 93988038 CGGGCCTCTGTAACTTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTGACTATG 93988097 Query 14609 CCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTC--ATTGC 14666 |||||||| |||||||| || |||| |||| ||||| | | ||| || || | Sbjct 93988098 CCATCACTCGCTGCAAAGAAAGCCAGAATGTGAGCTATAAAATGTCTCTCATCCAGTTTC 93988157 Query 14667 TGAGTTTTTTCCAATCGGCTAAAT--CCTTAGAAAGATCTACTTCATCAACTGTCCAAAA 14724 ||| || ||| | | | ||| |||| ||||| || || | | | |||||||| Sbjct 93988158 AGAG--CTTCCCAGT--GTTGAATACCCTTGGAAAGGTCCACCTTCTTGGCAGTCCAAAA 93988213 Query 14725 ACTAGCAACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTAC 14784 || ||||||| || ||||| ||| || || | ||| || ||||| || || Sbjct 93988214 GGAGGCCTCAGCTTTCTTGTACATCTGCCAGATATCATGGTATTCAATGGGAAAGACAAC 93988273 Query 14785 AAA 14787 ||| Sbjct 93988274 AAA 93988276 >seq7 Length=104786220 Score = 102 bits (112), Expect = 8e-17 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 14228 TCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttttt 14287 ||||| || || || ||||| |||||||| || | ||| ||||| | |||| || ||| Sbjct 35873931 TCATCCCTGCTGATCAGTTCATTTGAAAAAGTCAGTCCAGGCATGAGGCCTCTCTTCTTT 35873990 Query 14288 AACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGC 14346 | ||| ||||||||||| |||||||| || ||||| ||||| || || |||||||| || Sbjct 35873991 AGCCAGAATATTGCAGCAAATGATCCAGAGAAGAAAATTCCTTCCACAGCAGCAAAGGC 35874049 >seq4 Length=114123490 Score = 102 bits (112), Expect = 8e-17 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 14226 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 14285 |||| ||||| |||||||| || || |||||||| | || ||||||| || ||||| | Sbjct 16582949 CCTCGTCTCTGCTAATAAGCTCATTGGAAAATGTAAGGCCCGGCATCAGCCCCCGTTTCT 16582890 Query 14286 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345 | | ||| ||||||| || || || ||||||||||| ||||| || || || ||||| | Sbjct 16582889 TGAGCCAGAATATTGATGCAAAAGAACCGGAAAAGAAGATTCCTTCTACGGCGGCAAAGG 16582830 Query 14346 CTATTAATCGTTCTCC 14361 | | | |||||||| Sbjct 16582829 CCACAACGCGTTCTCC 16582814 Score = 84.2 bits (92), Expect = 2e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 14473 AATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTG 14532 |||||| || |||||||| | || |||||||||||||||||||||||||| || || || Sbjct 16581637 AATGTAAGTGTCAATAAGGAGACTGTACATTTCAGAGTGTATGTTTTCCATGGCAATTTG 16581578 Query 14533 AAAACCATAAAAACATCTAGCTTCTG 14558 || ||||| ||||| | || |||| Sbjct 16581577 GAAGCCATAGAAACAGCGGGCCTCTG 16581552 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482313017554720