Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26] 5,404 sequences; 2,625,587,472 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq17 116 3e-21 seq3385 107 2e-18 seq14 93.3 4e-14 seq11 84.2 2e-11 seq5 84.2 2e-11 >seq17 Length=136257712 Score = 116 bits (128), Expect = 3e-21 Identities = 115/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 23048 ACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTG 23107 ||||| ||||| ||||||||||| ||||| ||||| || ||||| || || || || Sbjct 91852725 ACCTCATCTTTACTGGTGTACTCTACTATTTCTGTACACAGGTTGCTGCATTTAATGGTT 91852666 Query 23108 CCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTG 23167 |||| || ||||||||| || || || || ||||| |||||||||||||| || ||| Sbjct 91852665 CCCAGGTTCTGCTGGTTGCTCTTCCGGTTACAGGAATCTTTGTAGAGCATGTATGGGGTG 91852606 Query 23168 CCCGTCTCGACCTGCGACTCGATGATCGC 23196 || ||||| ||| ||||| ||||| || Sbjct 91852605 CCGGTCTCCGTCTGGGACTCAATGATGGC 91852577 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || | || ||||| || || || ||||| ||||| | || |||||||| || Sbjct 39746310 ATGCAGATCTCTGTGAAGACCCTTACGGGGAAAACCATCACGCTAGAGGTTGAACCCTCG 39746369 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | |||| || || | || ||| |||||||| | || || || ||| Sbjct 39746370 GACACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 39746429 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || || ||||| || ||| ||||||| |||| || || || ||| Sbjct 39746430 CAGAGGCTGATCTTTGCTGGTAAGCAGCTGGAAGATGGCCGGACTTTGTCTGACTACAAC 39746489 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 |||||||| || || || ||||||||||| | ||||| |||| ||| Sbjct 39746490 ATTCAAAAGGAGTCTACCCTTCATCTGGTGTTGAGACTTCGGGGTGGT 39746537 Score = 89.7 bits (98), Expect = 5e-13 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 23352 TCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTT 23411 |||| || ||||| || ||||| || || |||| || ||||| || ||| || || | Sbjct 91850557 TCATGAAGAGATCTGGGATCCAAAGTGCAAAGAAGAGATCGCGTGCTCGCTGTTCTTCCT 91850498 Query 23412 TGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGT 23471 |||| |||||||| ||||| || | || || || | ||| ||||| ||||| |||| Sbjct 91850497 TGCCTGTGTTCTTCTTCAAGTCAAGGAACTCAAAGATGTCTAAGTGCCAAGGCTCCAGGT 91850438 Query 23472 AAACGGCAAACGCGCCCGG 23490 ||| ||||||||||| || Sbjct 91850437 AAATAGCAAACGCGCCTGG 91850419 >seq3385 Length=62036 Score = 107 bits (118), Expect = 2e-18 Identities = 583/919 (63%), Gaps = 26/919 (3%) Strand=Plus/Plus Query 57526 AGAATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACA 57585 ||| | |||| || |||||||| ||||| || | ||||| || || |||| ||||| | Sbjct 20071 AGAGTTCCCGAAGGTTTGTCATCTTTCCAATCCAGTATCCTGATATCTGGAGAATGTATA 20130 Query 57586 AAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCG 57645 | | ||| ||||| || ||||| | ||||| || ||| |||| ||||| || Sbjct 20131 AGCAAGCACGGGCATCTTTCTGGACAGAAGAAGAGGTTGACTTGTCAAAGGACCTCCCTC 20190 Query 57646 ATTGGGATTCCCTCAAAGAATCTGA-GAGAAAT--TTTATTAAACACGTGTTGGCGTTTT 57702 | ||| | || ||| || || ||||| | ||||| ||| | || || |||| Sbjct 20191 ACTGGAACAAGCTTAAA---TCCGACGAGAAGTACTTTATCTCCCACATCTTAGCCTTTT 20247 Query 57703 TCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGC 57762 | || || ||||| ||||| || || || ||||| || | ||| || || |||| Sbjct 20248 TTGCAGCCAGTGATGGAATTGTAAATGAAAACTTGGTGGAGCGTTTTAGTCAGGAGGTGC 20307 Query 57763 AAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAG 57822 | || ||||| | ||||| || || ||||| | ||| || || || || |||| Sbjct 20308 AGGTTCCGGAGACTCACTGCTTCTATGGCTTTCAGATTCTCATCGAGAATGTTCACTCAG 20367 Query 57823 AAATGTATTCGCTACTCATCGATACGTACGTGAAGGA--CAACGACGAGAAACGTAGACT 57880 | ||||| |||| || || || ||| | | || ||| || || | | | Sbjct 20368 AGATGTACAGTTTACTAATAGACACTTACATCAGAGATCCAAAGAAAAGGGAATTTT--T 20425 Query 57881 GTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATG 57940 || ||||| || ||||||||||| | || || || || ||| | | || Sbjct 20426 ATTTAACGCAATTGAAACAATGCCATATGTTAAGAAAAAAGCGGACTGGGCTCTGCGCTG 20485 Query 57941 GATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGG 58000 |||| | | | || || | || || | | || || || || || ||||| Sbjct 20486 GATAGCAGATAGGAAATCTACTTTTGGGGAAAGAGTGGTGGCCTTTGCTGCTGTGGAAGG 20545 Query 58001 TATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCC 58060 || | ||| || || ||||| |||||||| ||| | ||||| | ||||| ||||| Sbjct 20546 AATTTCCTTCTCTGGATCATTTGCTGCAATATTCTGGCTAAAGAAGAGAGGCCTCATGCC 20605 Query 58061 CGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGC 58120 | ||||| ||| || || |||| | || || ||||| || ||| ||||| Sbjct 20606 TGAACTGACTTTTTCAAATGAACTGATCAGCAGGGATGAAGGTCTTCACTGTGACTTTGC 20665 Query 58121 GTGCCTAATGTACTCTCACATTGTCAATAAACCGACGCGGGATCGCATCTTGGACATTAT 58180 ||||| ||| | ||| || | || || | || | | ||| || || Sbjct 20666 CTGCCTGATG---TTTCA----GT--ACAAGCCTTCAGAAGACAGAGTGAGGGAAATCAT 20716 Query 58181 CACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCT 58240 | || || || || || | |||||| | || |||||| | || || | | | | Sbjct 20717 TGCTGATGCTGTTCAAATTGAGCAGGAGTTTTTAACAGAAGCCTTGCCTGTTGGCCTCAT 20776 Query 58241 CGGTATGAACAATGATTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTGCT 58300 || || ||| ||| ||||| | | |||||||||||||||| || |||||| | | | Sbjct 20777 TGGAATTAACTATGTTTTGACGAAACAGTACATTGAGTTTGTAGCTGACAGATTACTTAT 20836 Query 58301 CGAACT--GATT-GGAGAGCGTCATTACAACACGAAAAATCCGTTTGATTTTATGAATCT 58357 ||||| |||| | || | || | | | ||||||| |||||||||||| | Sbjct 20837 AGAACTTGGATTCTCAAAGATT--TTTC-AGGCAGAAAATCCCTTTGATTTTATGGAGAA 20893 Query 58358 GATCTCGCTCGAGGGCAAGACAAACTTTTTCGaaaaaaaaGTTAGCGAATATCAAAAATA 58417 || || | || || || ||||| || || || ||| |||| || ||||| | || Sbjct 20894 CATTTCATTAGAAGGGAAAACAAATTTCTTTGAGAAACGAGTTTCTGAGTATCAGAGATT 20953 Query 58418 CGGCGTGATGAGCGGTAAC 58436 | || ||| |||| ||| Sbjct 20954 TGCAGTCATG-GCGGAAAC 20971 >seq14 Length=152946536 Score = 93.3 bits (102), Expect = 4e-14 Identities = 495/775 (64%), Gaps = 47/775 (6%) Strand=Plus/Minus Query 57549 TTTCCGATTGAATATCCAGACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGG 57608 ||||| || | || | || || ||| | |||||||| || || || || | |||||| Sbjct 69610591 TTTCCCATCTAGTACCATGATATCTGGCAGATGTACAAGAAAGCTGAGGCCACCTTTTGG 69610532 Query 57609 ACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATTGGGATTCCCTCAAAGAATCT 57668 || | || || || ||||| || ||||| | ||| | ||||| | || || | Sbjct 69610531 ACTGATGAGGAGGTGGACCTTTCCAAGGAGATCAGC-ACTGGGAAGCTCTGAA------T 69610479 Query 57669 GAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAAC 57728 || ||||||||||| || || |||| || || || || ||||| || | ||| Sbjct 69610478 GACAGAAATTTTATAGCTCATGTTCTGGCTTTCTTTGCAGCGAGTGATGGCATACTCAAC 69610419 Query 57729 GAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTAC 57788 | || ||||| || ||||| |||||||| ||||| || ||||| |||| ||||| Sbjct 69610418 GCAAACTTGGTGGAGCGATTTAGCCAAGAAGTTCAAGTTACAGAGGCTGGATG-TTTTAT 69610360 Query 57789 GGATT-TCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATAC 57847 || || | || ||| || |||| | || || ||||||| || || || || | Sbjct 69610359 GGCTTCTAAACTGG-CAGGGAAAGGATACACTCTAAAATGTACAGTCTCCTTATTGACAT 69610301 Query 57848 GTACGTGAAGGA---CAACG-ACGAGAAACGTAGACTGTTCAACGCGATCGAAACAATGC 57903 ||| | || || ||| | | ||||| || || ||||| || || |||||||||| Sbjct 69610300 TTACATTAAAGATCCCAAAGAAAGAGAA---TA-TCTTTTCAATGCTATTGAAACAATGC 69610245 Query 57904 CCGCGATCGCCAAGAAGGCAGAGTGG-----TCAATCAAATGGATAAAAAGCGCCACGGC 57958 | | | ||||||| || ||| || | | ||| | |||| | Sbjct 69610244 CTGTG-------AGAAGGCTGACTGGGCCTTGCATTGGACTGGGGACAAAG-----AAGT 69610197 Query 57959 CACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTC-TTTTCGGGCA 58017 || | || || | | | || || ||| | || |||| || ||| ||||| || Sbjct 69610196 TACATATGCAGAACGAGTTGTGGCCTTTGCCACGGTAGAAGCAATCTTCTTTTTCTGGTT 69610137 Query 58018 GCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCA 58077 ||||| | ||||| ||| | ||||||| || |||||||| |||| || ||| || Sbjct 69610136 CTTTTGCATCGATATTCTGGCTCAAGAAACAGGGGCTGATGCCGGGCCCTACATTTTCCA 69610077 Query 58078 ACGAGTTGATATCGC-GCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCT 58136 | ||| | || | || | ||| ||||| | || || |||| | ||| |||| | Sbjct 69610076 ATGAGCTTAT-TAGCAGAGACTAGGGTTTACACTGGGACTTTGTCTACCTGATGTTCAAG 69610018 Query 58137 CACATTGTCAATAAACCGACGCGGGATCGCATCTTGGACATTATCACCGAGGCGG-TCGC 58195 ||| | || | || || || | | | | || || |||||| | | || | | Sbjct 69610017 CACCTGGTACACAAGCCATCGAAGCA--GAGTAAAAGAAATAATCACCAACGAGGTTAGG 69609960 Query 58196 GATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGC---TCGGTATGAACAA 58252 ||| || | | | | ||| || ||| | || ||| |||| ||| |||||| Sbjct 69609959 GATAGAGCAGGGGATCCTCATGGAGGCCTTGCCTGTG---ATGCTCATCGAGATGAACTG 69609903 Query 58253 TGATTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTGCTCGAACTG 58307 ||||||| |||||||||| ||||| ||||| || ||| |||| || ||| Sbjct 69609902 CACTTTGATGAAGCAGTACATTGAATTTGTGGCCGATAGGCTTATGCTGGAGCTG 69609848 >seq11 Length=59623150 Score = 84.2 bits (92), Expect = 2e-11 Identities = 155/224 (69%), Gaps = 5/224 (2%) Strand=Plus/Plus Query 31199 ATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGT 31258 ||||| | ||||| || | || ||||| ||||| |||| |||||||| || |||| | Sbjct 13412068 ATTTTTGAGAAGACCCTAATGGGGAAAACCATCACGCTCGAGGTTGAACCCTCGGACACT 13412127 Query 31259 GTCGAAACGGTCAAACAGAGAATAGC--GGACAAGGAAGGCGTGCCGCCCGACCAGCAGC 31316 | |||| || || | || | | |||||||||||| | | || | |||||| Sbjct 13412128 ATAGAAAATGTAAAG--GTCAAGACCCAGGACAAGGAAGGAATTCTTCCTCATCAGCAGA 13412185 Query 31317 GTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTC 31376 | || | || ||||| || || ||||||| |||| || || || ||||||| Sbjct 13412186 GGCTGGTCTTTGCTGGTAAG-AGCTGGAAGATGGCCGGACTTTGTCTGACTACAACATTC 13412244 Query 31377 AAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 |||| || || || ||||||||||| | ||||| |||| ||| Sbjct 13412245 AAAAGGAGTCTACCCTTCATCTGGTGTTGAGACTTCGGGGTGGT 13412288 Score = 84.2 bits (92), Expect = 2e-11 Identities = 155/224 (69%), Gaps = 5/224 (2%) Strand=Plus/Plus Query 31199 ATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGT 31258 ||||| | ||||| || | || ||||| ||||| |||| |||||||| || |||| | Sbjct 13413019 ATTTTTGAGAAGACCCTAATGGGGAAAACCATCACGCTCGAGGTTGAACCCTCGGACACT 13413078 Query 31259 GTCGAAACGGTCAAACAGAGAATAGC--GGACAAGGAAGGCGTGCCGCCCGACCAGCAGC 31316 | |||| || || | || | | |||||||||||| | | || | |||||| Sbjct 13413079 ATAGAAAATGTAAAG--GTCAAGACCCAGGACAAGGAAGGAATTCTTCCTCATCAGCAGA 13413136 Query 31317 GTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTC 31376 | || | || ||||| || || ||||||| |||| || || || ||||||| Sbjct 13413137 GGCTGGTCTTTGCTGGTAAG-AGCTGGAAGATGGCCGGACTTTGTCTGACTACAACATTC 13413195 Query 31377 AAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 |||| || || || ||||||||||| | ||||| |||| ||| Sbjct 13413196 AAAAGGAGTCTACCCTTCATCTGGTGTTGAGACTTCGGGGTGGT 13413239 >seq5 Length=117181667 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/230 (69%), Gaps = 8/230 (3%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| ||||| || ||||| || ||||| ||||| |||| |||| |||||||| | Sbjct 9091817 ATGCAGATTTTTGTGAAGACCCTTACAGGGAAAACTGTCACGCTCGAGGTTGAACCCTGG 9091758 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGC--GGACAAGGAAGGCGTGCCGCCCGACC 31310 |||| | |||| | || | || | | ||| |||||||| | || || | | Sbjct 9091757 GACACTACAGAAAATATAAAG--GCCAAGACCCAGGATAAGGAAGGACTTCCTCCTCATC 9091700 Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATA 31370 ||||| | || | || ||||| || ||| ||||||| |||| ||| || | Sbjct 9091699 AGCAGAGGCTGGTCTTTGCTGGTAAGCAGCTGGAAGATGGCCGGACTTTGAC----TACA 9091644 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 ||||||||| || || || ||||||||||| | ||||| |||| ||| Sbjct 9091643 ACATTCAAAGGGAGTCCACCCTTCATCTGGTGTTGAGACTTCGGGGTGGT 9091594 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445736288479680