Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26] 5,404 sequences; 2,625,587,472 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq3385 89.7 1e-12 seq4 84.2 4e-11 >seq3385 Length=62036 Score = 89.7 bits (98), Expect = 1e-12 Identities = 292/453 (64%), Gaps = 13/453 (3%) Strand=Plus/Plus Query 101902 TTTGGCGGAACTAATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATT 101961 ||||| |||| | | || ||||||||||| || |||||||| | ||| ||| |||| Sbjct 20508 TTTGG-GGAAAGAGTGGTGGCCTTTGCTGCTGTGGAAGGAATTTCCTTCTCTGGATCATT 20566 Query 101962 CGCATCCATTTTCTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGA 102021 || | || |||||| | ||||| || || | |||||| || || | || ||||| Sbjct 20567 TGCTGCAATATTCTGGCTAAAGAAGAGAGGCCTCATGCCTGAACTGACTTTTTCAAATGA 20626 Query 102022 GTTCATTTCTAGGGACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGG 102081 | || ||||| ||||||||||| | |||||||| ||| || |||| | | Sbjct 20627 ACTGATCAGCAGGGATGAAGGTCTTCACTGTGACTTTGCCTGCCTGATGTTTCA-----G 20681 Query 102082 TTTTGTTGATACCCCATCAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAAT 102141 | | | || ||| ||| || | ||||| | |||| || || | ||| Sbjct 20682 T-------ACAAGCCTTCAGAAGACAGAGTGAGGGAAATCATTGCTGATGCTGTTCAAAT 20734 Query 102142 TGAACAAGAATTTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTT 102201 ||| || || ||| | |||| || |||||||| | | ||||| |||| || Sbjct 20735 TGAGCAGGAGTTTTTAACAGAAGCCTTGCCTGTTGGCCTCATTGGAATTAACTATGTTTT 20794 Query 102202 GATGAGCCAGTACATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAA 102261 || || ||||||||||| ||||| || || | | || | | ||| | ||| | ||| Sbjct 20795 GACGAAACAGTACATTGAGTTTGTAGCTGACAGATTACTTATAGAACTTGGATTCTCAAA 20854 Query 102262 GCACTATAATGTTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGAC 102321 | | | | | || ||||| || ||||| || ||||| | || || || Sbjct 20855 GATTTTTCAGGCAGAAAATCCCTTTGATTTTATGGAGAACATTTCATTAGAAGGGAAAAC 20914 Query 102322 CAACTTTTTTGAAAAGAGAGTCGCCGAGTATCA 102354 || || ||||| || |||| | |||||||| Sbjct 20915 AAATTTCTTTGAGAAACGAGTTTCTGAGTATCA 20947 >seq4 Length=114123490 Score = 84.2 bits (92), Expect = 4e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 101916 TTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCT 101975 |||| |||||||| || || ||||||||||||||| ||| | || ||||| || |||| Sbjct 16582824 TTGTGGCCTTTGCCGCCGTAGAAGGAATCTTCTTTTCCGGTTCTTTTGCATCAATATTCT 16582883 Query 101976 GGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGG 102035 || ||||||| |||| | |||| || || || | ||||||||| | ||| || | Sbjct 16582884 GGCTCAAGAAACGGGGGCTGATGCCGGGCCTTACATTTTCCAATGAGCTTATTAGCAGAG 16582943 Query 102036 ACGA 102039 |||| Sbjct 16582944 ACGA 16582947 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989515482440820