Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26] 5,404 sequences; 2,625,587,472 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq3385 336 2e-87 seq14 156 4e-33 seq17 147 2e-30 seq7 120 3e-22 >seq3385 Length=62036 Score = 336 bits (372), Expect = 2e-87 Identities = 612/885 (69%), Gaps = 32/885 (4%) Strand=Plus/Minus Query 11342 TGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAGTGATATATACTCC 11401 ||||| ||| ||||||| || || ||||| || || ||||||| ||| || | |||| Sbjct 20947 TGATACTCAGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAATGAAATGTTCTCC 20888 Query 11402 ATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAACT-CTGTTAATAA 11460 ||||| ||| ||||| | | | | ||| | | ||| | || | || | || | | ||| Sbjct 20887 ATAAAATCAAAGGGATTTTCTGCCT-GAAAAATCTTTGAGAATCCAAGTTCTATAAGTAA 20829 Query 11461 TCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAGATC 11520 ||| || || || || || || ||||| | | ||| | | || || || || || | Sbjct 20828 TCTGTCAGCTACAAACTCAATGTACTGTTTCGTCAAAACATAGTTAATTCCAATGAGGCC 20769 Query 11521 CACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCA---ATGATTAT 11577 || || | || |||| |||||||||| || || | ||| |||||| |||||| Sbjct 20768 AACAGGCAAGGCTTCTGTTAAAAACTCCTGCTCAATTTGAACAGCATCAGCAATGATTTC 20709 Query 11578 CGACGTTATAACTTCCTTAGATGGTGGATGTAATAAATGTTTAAACATTAAACACGCAAA 11637 | | | | |||| || | |||| | || |||| | || ||||| Sbjct 20708 CCTCACTCTGTCTTCTGAAG-----GCTTGTACTGAA-------ACATCAGGCAGGCAAA 20661 Query 11638 ATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCAT 11697 ||||| || | |||||| || || || || |||||||| ||||| || | | | ||||| Sbjct 20660 GTCACAGTGAAGACCTTCATCCCTGCTGATCAGTTCATTTGAAAAAGTCAGTTCAGGCAT 20601 Query 11698 CAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTC 11757 | |||| || |||| ||| ||||| ||||||||||| ||||| ||| | ||||| || Sbjct 20600 GAGGCCTCTCTTCTTTAGCCAGAATATTGCAGCAAATGATCCAGAGAAGGAAATTCCTTC 20541 Query 11758 CACAGCTGCAAATGCTACTACTCTTTCTCCATA--TACCTTGTTGCTA---GATATCCAT 11812 |||||| ||||| || || |||||||| ||| | || | || ||| | |||||| Sbjct 20540 CACAGCAGCAAAGGCCACCACTCTTTCCCCAAAAGTAGAT--TTCCTATCTGCTATCCAG 20483 Query 11813 TTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATAAA 11872 ||||| || ||||| || || || || ||||||||| || |||||||||||| Sbjct 20482 CGCAGAGCCCAGTCCGCTTTTTTCTTAACATATGGCATTGTTTCAATTGCGTTAAATAAA 20423 Query 11873 TGCATT---TTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCT 11929 ||| |||||| | |||||| | || || ||||||| |||||| ||||| ||| Sbjct 20422 --AATTCCCTTTTCT-TTGGATCTCTGATGTAAGTGTCTATTAGTAAACTGTACATCTCT 20366 Query 11930 GAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGT 11989 || |||| ||| || || || ||||| |||||||| || | | ||| | | ||| Sbjct 20365 GAGTGAACATTCTCGATGAGAATCTGAAAGCCATAGAAGCAGTGAGTCTCCGGAACCTGC 20306 Query 11990 ACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAA 12049 || ||| | ||| | ||| | || || ||||||||||| |||||||| | ||||||| Sbjct 20305 ACCTCCTGACTAAAACGCTCCACCAAGTTTTCATTTACAATTCCATCACTGGCTGCAAAA 20246 Query 12050 AATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAA-TTTATCCCAATCATC 12108 || |||| || || |||||||| || ||||| | |||| || | ||| | | Sbjct 20245 AAGGCTAAGATGTGGGAGATAAAGTACTTCTCGTC-GGATTTAAGCTTGTTCCAGTGAGG 20187 Query 12109 TAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTGTTTATA 12168 | || ||||| || || || ||||| | ||||| ||| |||| || ||| ||||| Sbjct 20186 GAGGTCCTTTGACAAGTCAACCTCTTCTTCTGTCCAGAAAGATGCCCGTGCTTGCTTATA 20127 Query 12169 CATTTTCCAGATATCATGATACTTAATAGGGAAAATAACGAACCT 12213 |||| ||||||||||| |||||| || || || || || ||||| Sbjct 20126 CATTCTCCAGATATCAGGATACTGGATTGGAAAGATGACAAACCT 20082 >seq14 Length=152946536 Score = 156 bits (172), Expect = 4e-33 Identities = 577/884 (65%), Gaps = 34/884 (4%) Strand=Plus/Plus Query 11330 ACCCCCATCTTTTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAGT 11389 || |||||| ||||| || | ||||| || || || || ||||| ||||||| | Sbjct 69609731 ACGCCCATCCACTGATACTCGCCTACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAAT 69609790 Query 11390 GATATATACTCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTT-TCACAACCTAA 11448 || |||| ||||| ||| ||| ||||| ||| ||| | | || | | |||| | Sbjct 69609791 GAAATATTTTCCATGAAGTCAAATGGATTTCCTACTCCGAAAAATCTTGTTAAAACCCAG 69609850 Query 11449 CTCTGTTAATAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCAT 11508 ||| | | ||||| || || ||||| || ||||| ||| ||| || ||||| Sbjct 69609851 CTCCAGCATAAGCCTATCGGCCACAAATTCAATGTACTGCTTCATCAAAGTGCAGTTCAT 69609910 Query 11509 ACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATAT-TAACCGCAT 11567 | || || ||| || | || | | | | | ||| ||||| ||||| | | Sbjct 69609911 CTCGATGAGCATCACAGGCAAGGCCTCCATGAGGATCCCCTGCTCTATCCCTAACCTCGT 69609970 Query 11568 CAATGATTATCGACGTTATAACTTCCTTAGATGGTGGATGTAATAAATGTTTAAACATTA 11627 ||||||| || || | ||| ||||| |||| | || || ||||| | Sbjct 69609971 TGGTGATTATTTC--TTTTACTCTGCTTCGATGGCTTGTGTACCAGGTGCTTGAACATCA 69610028 Query 11628 AACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTA 11687 | |||| || || |||||||| | |||||| || || || ||||| |||||||| Sbjct 69610029 GGTAGACAAAGTCCCAGTGTAAACCCTAGTCTCTGCTAATAAGCTCATTGGAAAATGTAG 69610088 Query 11688 ATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAG-AAAAG 11746 || ||||||| || |||| || | ||| ||||| | ||||| ||||||| ||||| Sbjct 69610089 GGCCCGGCATCAGCCCCTGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAAG 69610148 Query 11747 AATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATA--TACCTTGTTGCTAG 11804 || ||| | || || | ||||| || || |||| |||| |||| || ||| || | Sbjct 69610149 AAGATTGCTTCTACCGTGGCAAAGGCCACAACTCGTTCTGCATATGTAACTTCTTTGTCC 69610208 Query 11805 ATA-TCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCG 11863 | |||| | |||||| ||||| |||| | || ||||||||| ||||| Sbjct 69610209 CCAGTCCAATGCAAGGCCCAGTCAGCCTTCT------CACA-GGCATTGTTTCAATAGCA 69610261 Query 11864 TTAAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAA----ACT 11919 || || | || | ||||| | |||| ||| ||||| | | ||||| ||| Sbjct 69610262 TTGAAAAGATATTCTCTTTCTTTGGGATCT-TTA---ATGTAAATGTCAATAAGGAGACT 69610317 Query 11920 ATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTC 11979 ||||||| || || || ||||| | | ||| || ||||| ||||||| ||||| Sbjct 69610318 GTACATTTTAGAGTGTATCCTTTCCCTGCCAGTTTAGAAGCCATA-AAACATCCAGCCTC 69610376 Query 11980 TGAACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACT 12039 || | || || || ||||| ||| | || || | || | || |||||||| Sbjct 69610377 TGTAACTTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTGCGTTGAGTATGCCATCACT 69610436 Query 12040 AGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTC-TTTAGTTAATTTAT 12098 | |||||| || || || | ||| |||||| |||| | ||| || || | | | Sbjct 69610437 CGCTGCAAAGAAAGCCAGAACATGAGCTATAAA--ATTTCT-GTCATTCAG--AGCT--T 69610489 Query 12099 CCCAATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTG 12158 |||| | | | || || || | || || || ||| | |||||||| | ||| | | Sbjct 69610490 CCCAGTGCT-GATCTCCTTGGAAAGGTCCACCTCCTCATCAGTCCAAAAGGTGGCCTCAG 69610548 Query 12159 ATTGTTTATACATTTTCCAGATATCATGATACTTAATAGGGAAA 12202 || || ||||| | |||||||||||| |||| || |||||| Sbjct 69610549 CTTTCTTGTACATCTGCCAGATATCATGGTACTAGAT-GGGAAA 69610591 >seq17 Length=136257712 Score = 147 bits (162), Expect = 2e-30 Identities = 575/892 (64%), Gaps = 43/892 (5%) Strand=Plus/Plus Query 11330 ACCCCCATCTTTTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAGT 11389 || |||||| | ||||| || | ||| | || || || | || || ||||||||| Sbjct 93987400 ACTCCCATCCTCTGATACTCGCCTACTTGCTTCTCAAAGAAGTCTGTTTTTCCTTCTAGT 93987459 Query 11390 GATATATACTCCATAAAGCTAAAAGGATTATATACATTGAAGA-CTTTTTCACAACCTAA 11448 || |||| ||||| ||| ||| ||||| | ||| |||| | ||| || ||| || | Sbjct 93987460 GAAATATTTTCCATGAAGTCAAATGGATTTTCTACTCTGAAAATCTTCTTAACACCC-AG 93987518 Query 11449 CTCTGTTAATAATCTATCTGCGACGAA-TTCTATATACTGAGACATTAAACAACAATTCA 11507 ||| | | || || || | || ||| || ||||| ||| ||| |||||| Sbjct 93987519 CTCCAGTGGAAGCCTGTCAGCCAAAAAATTCAATGTACTGCTTCATCAAAGTGCAATTCG 93987578 Query 11508 TACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCAT 11567 || | || | ||| || | ||| | || | |||||||| |||| |||| | | Sbjct 93987579 CCCCGAAGAGCTTCACAGGCAAAGCCTCCGTGAGAAACTCCTGCCCTATCCTAACAGTGT 93987638 Query 11568 CAATGATT-ATCGACGTTATAACTTCCTTAGATGGTGGATGTAATAAATGTTTAAACATT 11626 || || || ||| || || |||| |||| | || || ||||| Sbjct 93987639 TGGTGTTTTATTTCTTTTACTGTTTGCTCCAATGGCTTGTGTACCAGGTGCTTGAACATC 93987698 Query 11627 AAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTT 11686 | || ||| | || || |||||||| |||||||| || || | ||||| |||| ||| Sbjct 93987699 AGCCAGGCAGAGTCCCAGTGTAAACCCTCGTCTCTGCTAATAAACTCATTGGAAAGTGTA 93987758 Query 11687 AATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAG 11746 | || ||||| || || || || | ||| ||||| | ||||| | Sbjct 93987759 AGGCCCAACATCAGTCTGCGATTCTTGAGCCAGAATATCGATGCAAA------------G 93987806 Query 11747 AATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATA------CCTTGTTG 11800 || | ||| ||||| || ||||| || || |||| |||||||||| | |||| Sbjct 93987807 AAGACTCCTTCCACCGCAGCAAAGGCCACAACTCATTCTCCATATGAGGACTCTTTGTCC 93987866 Query 11801 CTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTT---ACGCATTCCATTGTTTCT 11857 | || |||| |||||| ||||| ||||| || || || |||||||| Sbjct 93987867 CCAG---TCCAACGCAAGGCCCAGTCAGCCTTCTTCTTCTTCACACAAGGCATTGTTTAA 93987923 Query 11858 ATAGCGTTAAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAA- 11916 ||||| || || | || | |||| | |||| ||| ||||| | | ||||| Sbjct 93987924 ATAGCATTGAAGAGATATTCTCTTTCCTTGGGATCT-TTA---ATGTACGTGTCAATAAG 93987979 Query 11917 ---ACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCG 11973 ||| |||||||| || || || |||||||| || |||| || ||||||||||| || Sbjct 93987980 GGGACTGTACATTTCAGAGTGTATGTTTTCCATGGCAGTTTGGAAGCCATAGAAACAGCG 93988039 Query 11974 TGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACC 12033 ||||||| | || || || ||||| ||| | || || ||||| || || || Sbjct 93988040 GGCCTCTGTAACTTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTGACTATGCC 93988099 Query 12034 ATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTT-- 12091 |||||| | |||||| || || || || || |||||| | | | || || |||| Sbjct 93988100 ATCACTCGCTGCAAAGAAAGCCAGAATGTGAGCTATAAAATGTCTCTCATC--CAGTTTC 93988157 Query 12092 AATTTATCCCAATCATCTAAATCTTTTGATAAATCTA-CTTCTTCAACGGTCCAAAAACT 12150 | ||||| | | | | | || || | || | |||||| | |||||||| Sbjct 93988158 AGAGCTTCCCAGTGTTGAATACCCTTGGAAAGGTCCACCTTCTT-GGCAGTCCAAAAGGA 93988216 Query 12151 TGCCACTGATTGTTTATACATTTTCCAGATATCATGATACTTAATAGGGAAA 12202 ||| | | || || ||||| | |||||||||||| || | ||| |||||| Sbjct 93988217 GGCCTCAGCTTTCTTGTACATCTGCCAGATATCATGGTATTCAAT-GGGAAA 93988267 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 38413 GTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAA-TT 38471 || || || || || | |||||||| ||||| ||||||| || || || || || || Sbjct 91844417 GTCCCAGCATTGAAGAGAGTAGGAGAGGCATGAGTGAACCACTTCTCAGA-AAGTAGGTT 91844359 Query 38472 ATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAG 38531 || ||||| ||| || |||| ||||| | |||||| || | ||| |||||||| | Sbjct 91844358 GTAGGTTTCAATTGCAGCATCAATATCTTCTTTGTGAATCCCCACAGAAACCCTCATCAA 91844299 Query 38532 CATATGTTGTGGTCTTTC 38549 |||||| ||||||||||| Sbjct 91844298 CATATGCTGTGGTCTTTC 91844281 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197 |||||||| || || || || ||||||| || || || || || ||||| || |||||| Sbjct 91856955 ACCTGAAATTCCCCTGACAAGACTCTTCGAGTGTAGATGTTACTGGTATAAGGCTCAATG 91856896 Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAG 37253 ||||||||||| | | || || | || || |||||||||||||| || || || Sbjct 91856895 GACTCATTATTCCCCAGAATCTGGGCAGTTGAAGCAGTAGGCATTGGGGCAATAAG 91856840 >seq7 Length=104786220 Score = 120 bits (132), Expect = 3e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711 |||| || || || || |||||||| ||||| || | ||| ||||| | |||| || | Sbjct 35873929 CTTCATCCCTGCTGATCAGTTCATTTGAAAAAGTCAGTCCAGGCATGAGGCCTCTCTTCT 35873988 Query 11712 ttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATG 11771 ||| ||| ||||| ||||||||||| ||||| ||||| ||||| |||||||| ||||| | Sbjct 35873989 TTAGCCAGAATATTGCAGCAAATGATCCAGAGAAGAAAATTCCTTCCACAGCAGCAAAGG 35874048 Query 11772 CTACTACTCTTTCTCC 11787 | || |||||||| || Sbjct 35874049 CCACCACTCTTTCCCC 35874064 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468493151149760