Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26] 5,404 sequences; 2,625,587,472 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq18 253 2e-62 seq2 131 1e-25 seq15 114 1e-20 >seq18 Length=130317789 Score = 253 bits (280), Expect = 2e-62 Identities = 446/647 (69%), Gaps = 2/647 (0%) Strand=Plus/Minus Query 20945 GTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACGTG 21004 ||||| || || || ||||| ||||| ||||| || || || ||| || |||| || Sbjct 85151511 GTAAATATGTGCATCTCCCAAAGTGTGGACAAAATCACCTGGCTGCAGACCTGTGATATG 85151452 Query 21005 AGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCAT 21064 || |||| || || || || || |||||||| ||||| || || || || || ||||| Sbjct 85151451 TGCAATCATGTAGGTGAGCAGAGCATAGCTGGCAATGTTGAAAGGCACGCCCAGACCCAT 85151392 Query 21065 GTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCCACGTAAAACTGACA 21124 || | ||||||||||| || ||||| ||||||||||| |||| || |||||||| Sbjct 85151391 ATCTCCTGACCTCTGGTAAAGTTGGCAAGACAGCTCCCCATTCACCACATAGAACTGACA 85151332 Query 21125 CAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCCACGCGCACAT 21184 | | || |||||||| || |||||| | | || || |||||||| || ||||| Sbjct 85151331 GAGGGCATGGCAAGGAGGCAGTGCCATCAGGGGAAGATCTTTTGGGTTCCAGGCACACAT 85151272 Query 21185 AACGATGCGCCGATCGTGGGGCCGCCTGTTAATTAGATCCACCACGTAACGCAGCTGGTC 21244 | ||| | | || | || | || || || | || | |||||||||| Sbjct 85151271 GATGATTCTTCTGTCATCAGGGTTGGTTTTGATGGTGTCAATCATTTTTTGCAGCTGGTC 85151212 Query 21245 CACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTACTCCGCCCCAAAATGTCTCCA 21304 || || || ||| ||| | | || | ||||||| || |||||||| ||||| Sbjct 85151211 TACTCCTTGTCCCGGGTAATCTGAATCCATATCTTTGTACTCTGCTCCAAAATGCCTCCA 85151152 Query 21305 CTGGAACCCGTACACCGGCCCCAGATCGCCCTCGCGGCGGTCCCCGAAGCCCTGCGCCG- 21363 ||||| || || || || ||||| || || | | ||| | || ||| || | Sbjct 85151151 TTGGAAACCATAAACTGGGCCCAGGTCCCCTTTCTGTCGGGCAGAAAATCCCAA-GCTGT 85151093 Query 21364 CCAAAAAGGCGCGGGACCCGTGCGCGTCCCAAATTTTTACGCCGCGGCGCGACAGTTCGG 21423 ||| |||| | ||||| || | || ||||| ||| | || || | |||| ||| Sbjct 85151092 CCAGAAAGTCTCGGGATCCATTGGCATCCCAGATTCTCACTCCCTTGGAGGACAATTCTT 85151033 Query 21424 TGGAGTCGGTGGAGCCCCTGATAAACCACAGCAACTCCTCCACGACGCCCCTCCAAAACA 21483 | | | ||||| ||| |||||||||||| ||||||||||| || ||| |||| |||| Sbjct 85151032 TAGCATTTGTGGATCCCTTGATAAACCACAACAACTCCTCCAAAACACCCTTCCAGAACA 85150973 Query 21484 CCCTTTTGGTGGTTAACAGAGGAAACTCGTCCCTGAGGTTATATCGGGCCTGAAGCCCGA 21543 | | |||||| || | ||||||||| || || || ||| | ||||| ||||| | |||| Sbjct 85150972 CTCGTTTGGTTGTGAGCAGAGGAAATTCATCTCTCAGGCTGTATCGTGCCTGCATGCCGA 85150913 Query 21544 ACACGGACCTGGTGCCCACGCCCGTCCTGTCCTCCCTCTGCACGCCG 21590 |||| ||| |||||| ||| || | ||||||| ||| | |||| Sbjct 85150912 ACACCGACAGGGTGCCTGTGCCGGTGCGGTCCTCCTTCTTGAAGCCG 85150866 >seq2 Length=131945496 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 21364 CCAAAAAGGCGCGGGACCCGTGCGCGTCCCAAATTTTTACGCCGCGGCGCGACAGTTCGG 21423 ||| |||| | ||||| || | || ||||| ||| | || || | |||| ||| Sbjct 87052995 CCAGAAAGTCTCGGGATCCATTGGCATCCCAGATTCTCACTCCCTTGGAGGACAATTCTT 87052936 Query 21424 TGGAGTCGGTGGAGCCCCTGATAAACCACAGCAACTCCTCCACGACGCCCCTCCAAAACA 21483 | | | ||||| ||| |||||||||||| ||||||||||| || ||| |||| |||| Sbjct 87052935 TAGCATTTGTGGATCCCTTGATAAACCACAACAACTCCTCCAAAACACCCTTCCAGAACA 87052876 Query 21484 CCCTTTTGGTGGTTAACAGAGGAAACTCGTCCCTGAGGTTATATCGGGCCTGAAGCCCGA 21543 | | |||||| || | ||||||||| || || || ||| | ||||| ||||| | |||| Sbjct 87052875 CTCGTTTGGTTGTGAGCAGAGGAAATTCATCTCTCAGGCTGTATCGTGCCTGCATGCCGA 87052816 Query 21544 ACACGGACCTGGTGCCCACGCCCGTCCTGTCCTCCCTCTGCACGCCG 21590 |||| ||| |||||| ||| || | ||||||| ||| | |||| Sbjct 87052815 ACACCGACAGGGTGCCTGTGCCGGTGCGGTCCTCCTTCTTGAAGCCG 87052769 >seq15 Length=152823684 Score = 114 bits (126), Expect = 1e-20 Identities = 123/163 (75%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 20990 CAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGG 21049 |||||| |||| || || |||| || || || || || |||||||| ||||| || || Sbjct 27100104 CAGGCCTGTGATATGTGCAATCATGTAGGTGAGCAGAGCATAGCTGGCAATGTTGAAAGG 27100163 Query 21050 GACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGC 21109 || || || ||||| || | ||||||||||| |||||||| ||||||||||| | Sbjct 27100164 CACGCCCAGACCCATATCTCCTGACCTCTGGTAAAGCTGGCAAGACAGCTCCCCATTCAC 27100223 Query 21110 CACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATC 21152 ||| || |||||||| | | || |||||||| || |||||| Sbjct 27100224 CACATAGAACTGACAGAGGGCATGGCAAGGAGGCAGTGCCATC 27100266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427747826137920