Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26] 5,404 sequences; 2,625,587,472 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq3385 109 4e-19 seq14 89.7 4e-13 seq4 87.8 1e-12 seq7 82.4 5e-11 >seq3385 Length=62036 Score = 109 bits (120), Expect = 4e-19 Identities = 117/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 22748 TGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGC 22807 |||||||||| ||||| ||||| | || ||||| |||||||| || |||||||||| Sbjct 20524 TGGCCTTTGCTGCTGTGGAAGGAATTTCCTTCTCTGGATCATTTGCTGCAATATTCTGGC 20583 Query 22808 TGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACG 22867 | ||||| | |||||||| | || | ||||| || || |||| ||| | || | Sbjct 20584 TAAAGAAGAGAGGCCTCATGCCTGAACTGACTTTTTCAAATGAACTGATCAGCAGGGATG 20643 Query 22868 AAGGTCTACACTGTGACTTTGCTTGTATGCTGTTT 22902 ||||||| |||||||||||||| || || ||||| Sbjct 20644 AAGGTCTTCACTGTGACTTTGCCTGCCTGATGTTT 20678 >seq14 Length=152946536 Score = 89.7 bits (98), Expect = 4e-13 Identities = 126/176 (72%), Gaps = 1/176 (1%) Strand=Plus/Minus Query 22748 TGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTT-CTGGGTCATTTGCGGCCATATTCTGG 22806 |||||||||| | || |||| || | |||| |||| || ||||| | ||||||||| Sbjct 69610176 TGGCCTTTGCCACGGTAGAAGCAATCTTCTTTTTCTGGTTCTTTTGCATCGATATTCTGG 69610117 Query 22807 CTGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGAC 22866 || ||||||| ||| ||||| || | |||||||| ||| | |||||| | ||| Sbjct 69610116 CTCAAGAAACAGGGGCTGATGCCGGGCCCTACATTTTCCAATGAGCTTATTAGCAGAGAC 69610057 Query 22867 GAAGGTCTACACTGTGACTTTGCTTGTATGCTGTTTAGGCAAATGGCAAACAAACC 22922 | ||| ||||||| ||||||| | || |||| | ||| ||| | |||| || Sbjct 69610056 TAGGGTTTACACTGGGACTTTGTCTACCTGATGTTCAAGCACCTGGTACACAAGCC 69610001 >seq4 Length=114123490 Score = 87.8 bits (96), Expect = 1e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 22748 TGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGC 22807 |||||||||| || || ||||| || | ||||| || || ||||| | |||||||||| Sbjct 16582827 TGGCCTTTGCCGCCGTAGAAGGAATCTTCTTTTCCGGTTCTTTTGCATCAATATTCTGGC 16582886 Query 22808 TGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACG 22867 | |||||||| ||| ||||| || | | |||||||| ||| | |||||| | |||| Sbjct 16582887 TCAAGAAACGGGGGCTGATGCCGGGCCTTACATTTTCCAATGAGCTTATTAGCAGAGACG 16582946 Query 22868 A 22868 | Sbjct 16582947 A 16582947 >seq7 Length=104786220 Score = 82.4 bits (90), Expect = 5e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 22748 TGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGC 22807 |||||||||| ||||| ||||| | | || ||||| |||||||| || |||||||||| Sbjct 35874051 TGGCCTTTGCTGCTGTGGAAGGAATTTTCTTCTCTGGATCATTTGCTGCAATATTCTGGC 35873992 Query 22808 TGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACG 22867 | ||||| | |||||||| || || | ||||| || || |||| ||| | || | Sbjct 35873991 TAAAGAAGAGAGGCCTCATGCCTGGACTGACTTTTTCAAATGAACTGATCAGCAGGGATG 35873932 Query 22868 AAG 22870 ||| Sbjct 35873931 AAG 35873929 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356210138009812