Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26] 5,404 sequences; 2,625,587,472 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq3385 300 2e-76 seq14 176 4e-39 seq17 172 5e-38 seq4 105 6e-18 seq7 102 8e-17 >seq3385 Length=62036 Score = 300 bits (332), Expect = 2e-76 Identities = 584/851 (69%), Gaps = 21/851 (2%) Strand=Plus/Minus Query 13584 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13643 ||||| ||| ||||| ||| |||||||| || ||||| ||||| | ||| || || ||| Sbjct 20947 TGATACTCAGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAATGAAATGTTCTCC 20888 Query 13644 ATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAA-CCTAGTTCTAATAGTAA 13702 ||||||||||| |||||| || | ||| | || | | || || ||||||| ||||| Sbjct 20887 ATAAAATCAAAGGGATTTTCTGCCTGAAAAATCTT-TGAGAATCCAAGTTCTATAAGTAA 20829 Query 13703 TCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTT 13762 ||| ||||| | ||||||||| || || | | ||| || | || || || || || Sbjct 20828 TCTGTCAGCTACAAACTCAATGTACTGTTTCGTCAAAACATAGTTAATTCCAATGAGGCC 20769 Query 13763 TACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAAT 13822 ||||| | | |||||||| || | || || ||||| || || || Sbjct 20768 AACAGGCAAGGCTTCTGTTAAAAACTCCTGCTCAATTTGAACAGCATCAGCAATGATTTC 20709 Query 13823 TGTAATAATCTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATC 13882 | | | || | ||||| || || | ||| || | || ||||| || Sbjct 20708 CCTCACTCTGTCTTCTGAAGGC-----TTGTAC----TGAAACATCAGGCAGGCAAAGTC 20658 Query 13883 ACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAA 13942 ||| ||||| || ||||| || || || ||||| |||||||| || | | | ||||| | Sbjct 20657 ACAGTGAAGACCTTCATCCCTGCTGATCAGTTCATTTGAAAAAGTCAGTTCAGGCATGAG 20598 Query 13943 TCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAAC 14002 |||| || |||| ||| ||||||||||||||||| || || ||| | ||||| || || Sbjct 20597 GCCTCTCTTCTTTAGCCAGAATATTGCAGCAAATGATCCAGAGAAGGAAATTCCTTCCAC 20538 Query 14003 TGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCT 14062 |||||||| || | | || ||| ||||| | | ||| | | | |||||| Sbjct 20537 AGCAGCAAAGGCCACCACTCTTTCCCCAAAAGTAGATTTCCTATCTGCTATCCAGCGCAG 20478 Query 14063 AGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATATT- 14121 |||||| || | |||||| |||| | | |||||||||||| || ||||||||| ||| Sbjct 20477 AGCCCAGTCCGCTTTTTTCTTAACATATGGCATTGTTTCAATTGCGTTAAATAAAAATTC 20418 Query 14122 CCTTCTCTTTAGTACT-TGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGT 14180 |||| ||||| | || || ||||| || || || ||||| || ||||| || ||||| Sbjct 20417 CCTTTTCTTTGGATCTCTG--ATGTAAGTGTCTATTAGTAAACTGTACATCTCTGAGTGA 20360 Query 14181 ATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCG--ACCATTGTACTT 14238 | || || || |||||||| ||||| ||||| || |||| ||| || || | Sbjct 20359 ACATTCTCGATGAGAATCTGAAAGCCATAGAAGCAGTGAGTCTCCGGAACC--TGCACCT 20302 Query 14239 CC-GAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAAT 14297 || || ||||| | || |||| |||||||| || || |||||||| ||||||||||| Sbjct 20301 CCTGACTAAAA-CGCTCCACCAAGTTTTCATTTACAATTCCATCACTGGCTGCAAAAAAG 20243 Query 14298 GCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGATAAA 14357 || || |||| |||||||| | ||| || || || || ||||| | | | Sbjct 20242 GCTAAGATGTGGGAGATAAAGTACTTCTCGTCGGATTTAAGCTTGTTCCAGTGAGGGAGG 20183 Query 14358 TCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACATT 14417 ||||| || | || || || || ||||||| ||| || |||| ||||||||| Sbjct 20182 TCCTTTGACAAGTCAACCTCTTCTTCTGTCCAGAAAGATGCCCGTGCTTGCTTATACATT 20123 Query 14418 ACCCATATTTC 14428 ||| || || Sbjct 20122 CTCCAGATATC 20112 Score = 118 bits (130), Expect = 1e-21 Identities = 259/385 (67%), Gaps = 11/385 (3%) Strand=Plus/Minus Query 13584 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13643 ||||| ||| ||||| ||| |||||||| || ||||| ||||| | ||| || || ||| Sbjct 21489 TGATACTCAGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAATGAAATGTTCTCC 21430 Query 13644 ATAAAATCAAATGGATTTATTGACATAAACA-CTTTATCACAACCTAGTTCTAATAGTAA 13702 ||||||||||| |||||| || | ||| | |||| | | || ||||||| ||||| Sbjct 21429 ATAAAATCAAAGGGATTTTCTGCCTGAAAAATCTTTGAGA-ATCCAAGTTCTATAAGTAA 21371 Query 13703 TCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTT 13762 ||| ||||| | ||||||||| || || | | ||| || | || || || || || Sbjct 21370 TCTGTCAGCTACAAACTCAATGTACTGTTTCGTCAAAACATAGTTAATTCCAATGAGGCC 21311 Query 13763 TACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAAT 13822 ||||| | | |||||||| || | || || ||||| || || || Sbjct 21310 AACAGGCAAGGCTTCTGTTAAAAACTCCTGCTCAATTTGAACAGCATCAGCAATGATTTC 21251 Query 13823 TGTAATAATCTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATC 13882 | | | || | ||||| || || | ||| || | || ||||| || Sbjct 21250 CCTCACTCTGTCTTCTGAAGG-----CTTGTA----CTGAAACATCAGGCAGGCAAAGTC 21200 Query 13883 ACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAA 13942 ||| ||||| || ||||| || || || ||||| |||||||| || | | | ||||| | Sbjct 21199 ACAGTGAAGACCTTCATCCCTGCTGATCAGTTCATTTGAAAAAGTCAGTTCAGGCATGAG 21140 Query 13943 TCCTCGtttttttAACCAAAATATT 13967 |||| || |||| ||| |||||| Sbjct 21139 GCCTCTCTTCTTTAGCCAGAATATT 21115 >seq14 Length=152946536 Score = 176 bits (194), Expect = 4e-39 Identities = 579/887 (65%), Gaps = 26/887 (3%) Strand=Plus/Plus Query 13569 ATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCC 13628 || |||||||| ||||| || | |||| || ||||||||||| || || ||||| Sbjct 69609728 ATGACGCCCATCCACTGATACTCGCCTACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCT 69609787 Query 13629 AGTGATATATTTTCCATAAAATCAAATGGATTTATTGA-CATAAACACTTTATCACAACC 13687 | ||| ||||||||||| || |||||||||||| | | ||| | || | | |||| Sbjct 69609788 AATGAAATATTTTCCATGAAGTCAAATGGATTTCCTACTCCGAAAAATCTTGTTAAAACC 69609847 Query 13688 TAGTTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATT 13747 || || | | | ||||| || | ||| ||||| || || ||| ||| || || Sbjct 69609848 CAGCTCCAGCATAAGCCTATCGGCCACAAATTCAATGTACTGCTTCATCAAAGTGCAGTT 69609907 Query 13748 CATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGC 13807 ||| | || || | ||||| | | | | | | | ||||| | | | Sbjct 69609908 CATCTCGATGAGCATCACAGGCAAGGCCTCCATGAGGATCCCCTGCTCTATC--CCTAAC 69609965 Query 13808 CTCTTTTATAATAATTG-TAATAATCTCATTAGAAGGAGGATATTTTAGATGTTTAAAAA 13866 ||| || | || ||| | || ||| || || || | | || || || || | Sbjct 69609966 CTCGTTGGTGATTATTTCTTTTACTCTGCTTCGATGGCTTGTGTACCAGGTGCTTGAACA 69610025 Query 13867 TTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATG 13926 | | | |||| || || || | |||| ||||| |||||||| || || ||||||| Sbjct 69610026 TCAGGTAGACAAAGTCCCAGTGTAAACCCTAGTCTCTGCTAATAAGCTCATTGGAAAATG 69610085 Query 13927 TTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAA 13986 | || ||||||| || |||| || | ||| ||||| | ||||| || || |||| Sbjct 69610086 TAGGGCCCGGCATCAGCCCCTGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAA 69610145 Query 13987 A-GAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTG 14045 | ||| ||| | || || | ||||| || | | ||||||| || | | ||| |||| Sbjct 69610146 AAGAAGATTGCTTCTACCGTGGCAAAGGCCACAACTCGTTCTGCATATGTAACTTCTTTG 69610205 Query 14046 TTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATA 14105 | | |||| | ||||| |||| || | | | ||||||||||||| Sbjct 69610206 TCCCCAGTCCAATGCAAGGCCCAGTCAGCCTTCTC-------ACAGGCATTGTTTCAATA 69610258 Query 14106 GCATTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTA 14165 ||||| || | |||||| | ||||| | | | |||||| | |||||||| | || Sbjct 69610259 GCATTGAAAAGATATTCTCTTTCTTTGGGATCTTTAATGTAAATGTCAATAAGGAGACTG 69610318 Query 14166 TACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCC 14225 ||||||| ||||||||| ||||| | | | | || |||||||| |||| ||| || Sbjct 69610319 TACATTTTAGAGTGTATCCTTTCCCTGCCAGTTTAGAAGCCATAAAA-CATCCAGCCTCT 69610377 Query 14226 GACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTA 14285 | ||| ||||| | ||||| || |||| ||| | || | ||| |||||||| Sbjct 69610378 GTAACTTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTGCGTTGAGTATGCCATCACTC 69610437 Query 14286 GCTGCAAAAAATGCC--AATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTT 14343 |||||||| || ||| || ||| | ||||| ||| || ||| || || || Sbjct 69610438 GCTGCAAAGAAAGCCAGAACATGAGCT--ATAAA--ATTTCT-GTCA---TTCAGAGCTT 69610489 Query 14344 TCCAAT-CGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACA 14402 ||| | | ||| ||||| ||||| || || || ||| | |||||||| | || || Sbjct 69610490 CCCAGTGCTGAT--CTCCTTGGAAAGGTCCACCTCCTCATCAGTCCAAAAGGTGGCCTCA 69610547 Query 14403 GCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAAC 14449 ||||| || ||||| ||| || || | || | || ||||| || Sbjct 69610548 GCTTTCTTGTACATCTGCCAGATATCATGGTACTAGATGGGAAAGAC 69610594 >seq17 Length=136257712 Score = 172 bits (190), Expect = 5e-38 Identities = 581/901 (64%), Gaps = 23/901 (3%) Strand=Plus/Plus Query 13563 TTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTA 13622 || || || || ||||| | ||||| || | ||| || |||||||||| ||||| Sbjct 93987391 TTCGACATGACTCCCATCCTCTGATACTCGCCTACTTGCTTCTCAAAGAAGTCTGTTTTT 93987450 Query 13623 CCTTCCAGTGATATATTTTCCATAAAATCAAATGGATTTATTGACATAAACACTTTATCA 13682 ||||| ||||| ||||||||||| || |||||||||||| | | || | || | | Sbjct 93987451 CCTTCTAGTGAAATATTTTCCATGAAGTCAAATGGATTTTCTACTCTGAAAATCTTCTTA 93987510 Query 13683 CAACCTAGTTCTAATAGTAATCTATCAGC-AATAAACTCAATATATTGAGACATTAAATC 13741 ||| || || | | | | || ||||| || ||| ||||| || || ||| ||| Sbjct 93987511 ACACCCAGCTCCAGTGGAAGCCTGTCAGCCAAAAAATTCAATGTACTGCTTCATCAAAGT 93987570 Query 13742 ACAATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGA 13801 |||||| || | || || ||||| | | || | ||| || | |||| Sbjct 93987571 GCAATTCGCCCCGAAGAGCTTCACAGGCAAAGCCTCCGTGAGAAACTCCTGCCCTATCCT 93987630 Query 13802 CACAGCCTC--TTTTATAATAATTGTAATAATCTCATTAGAAGGAGGATATTTTAGATGT 13859 |||| | | || || | || || | | | | | || | | || || Sbjct 93987631 AACAGTGTTGGTGTTTTATTTCTTTTACTGTTTGCTCCA-ATGGCTTGTGTACCAGGTGC 93987689 Query 13860 TTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTT 13919 || || || | || ||| | || || || | ||||| ||||| ||||||| || || Sbjct 93987690 TTGAACATCAGCCAGGCAGAGTCCCAGTGTAAACCCTCGTCTCTGCTAATAAACTCATTG 93987749 Query 13920 GAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGAC 13979 |||| ||| | || ||||| || || || || | ||| ||||| | ||||| Sbjct 93987750 GAAAGTGTAAGGCCCAACATCAGTCTGCGATTCTTGAGCCAGAATATCGATGCAAA---- 93987805 Query 13980 CCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCT 14039 ||| | ||| || || |||||||| || | | || ||||||| | || | Sbjct 93987806 --------GAAGACTCCTTCCACCGCAGCAAAGGCCACAACTCATTCTCCATATGAGGAC 93987857 Query 14040 TTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAA---AATCCATT 14096 | ||||| | |||| ||||| |||| || || || | | || |||| Sbjct 93987858 TCTTTGTCCCCAGTCCAACGCAAGGCCCAGTCAGCCTTCTTCTTCTTCACACAAGGCATT 93987917 Query 14097 GTTTCAATAGCATTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATA 14156 |||| ||||||||| || | |||||| | || || | | | |||||| || |||||| Sbjct 93987918 GTTTAAATAGCATTGAAGAGATATTCTCTTTCCTTGGGATCTTTAATGTACGTGTCAATA 93987977 Query 14157 AGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCAT 14216 || || |||||||||||||||||||||||||| || | || || ||||| || || Sbjct 93987978 AGGGGACTGTACATTTCAGAGTGTATGTTTTCCATGGCAGTTTGGAAGCCATAGAAACAG 93988037 Query 14217 CTAGCTTCCGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATA 14276 | || || | ||| ||||| | ||||| || |||| |||||||| ||||| Sbjct 93988038 CGGGCCTCTGTAACTTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTGACTATG 93988097 Query 14277 CCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTG 14336 |||||||| |||||||| || |||| |||| ||||| | | ||| || || Sbjct 93988098 CCATCACTCGCTGCAAAGAAAGCCAGAATGTGAGCTATAAAATGTCTCTCATCCAGTTTC 93988157 Query 14337 AGTTTTTTCCAATCGGATAAAT--CCTTAGAAAGATCTACTTCATCAACTGTCCAAAAAC 14394 || || ||| | | | ||| |||| ||||| || || | | | |||||||| Sbjct 93988158 AGAGCTTCCCAGT--GTTGAATACCCTTGGAAAGGTCCACCTTCTTGGCAGTCCAAAAGG 93988215 Query 14395 TAGCGACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAA 14454 || ||||||| || ||||| ||| || || | ||| || ||||| || |||| Sbjct 93988216 AGGCCTCAGCTTTCTTGTACATCTGCCAGATATCATGGTATTCAATGGGAAAGACAACAA 93988275 Query 14455 A 14455 | Sbjct 93988276 A 93988276 >seq4 Length=114123490 Score = 105 bits (116), Expect = 6e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 |||| ||||| |||||||| || || |||||||| | || ||||||| || ||||| | Sbjct 16582949 CCTCGTCTCTGCTAATAAGCTCATTGGAAAATGTAAGGCCCGGCATCAGCCCCCGTTTCT 16582890 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 | | ||| ||||||| ||||| || ||||||||||| ||||| || || || ||||| | Sbjct 16582889 TGAGCCAGAATATTGATGCAAAAGAACCGGAAAAGAAGATTCCTTCTACGGCGGCAAAGG 16582830 Query 14014 CTATTAATCGTTCTCC 14029 | | | |||||||| Sbjct 16582829 CCACAACGCGTTCTCC 16582814 >seq7 Length=104786220 Score = 102 bits (112), Expect = 8e-17 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 13896 TCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttttt 13955 ||||| || || || ||||| |||||||| || | ||| ||||| | |||| || ||| Sbjct 35873931 TCATCCCTGCTGATCAGTTCATTTGAAAAAGTCAGTCCAGGCATGAGGCCTCTCTTCTTT 35873990 Query 13956 AACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGC 14014 | ||| ||||||||||||||||| || || ||||| ||||| || || |||||||| || Sbjct 35873991 AGCCAGAATATTGCAGCAAATGATCCAGAGAAGAAAATTCCTTCCACAGCAGCAAAGGC 35874049 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479695594373600