Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26] 5,404 sequences; 2,625,587,472 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq3385 298 5e-76 seq17 147 2e-30 seq7 102 8e-17 seq4 102 8e-17 >seq3385 Length=62036 Score = 298 bits (330), Expect = 5e-76 Identities = 602/881 (68%), Gaps = 19/881 (2%) Strand=Plus/Minus Query 13372 TGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13431 ||||| ||| ||||| ||| ||||| || || ||||| ||||| | ||| || || ||| Sbjct 20947 TGATACTCAGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAATGAAATGTTCTCC 20888 Query 13432 ATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAA-CCTAGTTCTAATAATAA 13490 |||||||| || |||||| || | ||| | || | | || || ||||||| | ||| Sbjct 20887 ATAAAATCAAAGGGATTTTCTGCCTGAAAAATCTT-TGAGAATCCAAGTTCTATAAGTAA 20829 Query 13491 TCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTT 13550 ||| ||||| | ||||||||| || || | | ||| || | || || || || || Sbjct 20828 TCTGTCAGCTACAAACTCAATGTACTGTTTCGTCAAAACATAGTTAATTCCAATGAGGCC 20769 Query 13551 TACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAAT 13610 ||||| | | |||||||| || | || || ||||| || || || Sbjct 20768 AACAGGCAAGGCTTCTGTTAAAAACTCCTGCTCAATTTGAACAGCATCAGCAATGATTTC 20709 Query 13611 CTTAATAATGTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATC 13670 | | | |||| | ||||| || || | ||| || | || ||||| || Sbjct 20708 CCTCACTCTGTCTTCTGAAGGC-----TTGTAC----TGAAACATCAGGCAGGCAAAGTC 20658 Query 13671 ACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAA 13730 ||| ||||| || ||||| || || || ||||| |||||||| || | | | ||||| | Sbjct 20657 ACAGTGAAGACCTTCATCCCTGCTGATCAGTTCATTTGAAAAAGTCAGTTCAGGCATGAG 20598 Query 13731 TCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAAC 13790 |||| || |||| ||| ||||||||||| |||||||| || ||| | ||||| || || Sbjct 20597 GCCTCTCTTCTTTAGCCAGAATATTGCAGCAAATGATCCAGAGAAGGAAATTCCTTCCAC 20538 Query 13791 TGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTTCT 13850 |||||||| || | | || ||| ||||| | | ||| | | || |||||| Sbjct 20537 AGCAGCAAAGGCCACCACTCTTTCCCCAAAAGTAGATTTCCTATCTGCTATCCAGCGCAG 20478 Query 13851 AGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAATGTT- 13909 |||||| || | |||||| |||| | | ||||||||| ||||| || |||||| || Sbjct 20477 AGCCCAGTCCGCTTTTTTCTTAACATATGGCATTGTTTCAATTGCGTTAAATAAAAATTC 20418 Query 13910 CCTTCTCTTTAGTACT-TGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGT 13968 |||| ||||| | || || ||||| || || || ||||| || ||||| || ||||| Sbjct 20417 CCTTTTCTTTGGATCTCTG--ATGTAAGTGTCTATTAGTAAACTGTACATCTCTGAGTGA 20360 Query 13969 ATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAG-CTTCTGACCATTGTACCTC 14027 | || || || |||||||| ||||| || || || || | || | || ||||| Sbjct 20359 ACATTCTCGATGAGAATCTGAAAGCCATAGAAGCAGTGAGTCTCCGGAAC-CTGCACCTC 20301 Query 14028 C-GAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATG 14086 | || ||||| | || ||||||||||||| ||||| |||||||| ||||||||||| | Sbjct 20300 CTGACTAAAA-CGCTCCACCAAGTTTTCATTTACAATTCCATCACTGGCTGCAAAAAAGG 20242 Query 14087 CCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGCTAAAT 14146 | || |||| |||||||| | ||| || || || || ||||| | | | | Sbjct 20241 CTAAGATGTGGGAGATAAAGTACTTCTCGTCGGATTTAAGCTTGTTCCAGTGAGGGAGGT 20182 Query 14147 CCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACATTA 14206 |||| || | || || || || ||||||| ||| || |||| ||||||||| Sbjct 20181 CCTTTGACAAGTCAACCTCTTCTTCTGTCCAGAAAGATGCCCGTGCTTGCTTATACATTC 20122 Query 14207 CCCATATTTCTTTATATAATATAGGAAAAACTACAAATCTT 14247 ||| || || ||| || ||||| | ||||| ||| Sbjct 20121 TCCAGATATCAGGATACTGGATTGGAAAGATGACAAACCTT 20081 Score = 114 bits (126), Expect = 1e-20 Identities = 258/385 (67%), Gaps = 11/385 (3%) Strand=Plus/Minus Query 13372 TGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13431 ||||| ||| ||||| ||| ||||| || || ||||| ||||| | ||| || || ||| Sbjct 21489 TGATACTCAGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAATGAAATGTTCTCC 21430 Query 13432 ATAAAATCGAATGGATTTGTTGACATAAACA-CTTTATCACAACCTAGTTCTAATAATAA 13490 |||||||| || |||||| || | ||| | |||| | | || ||||||| | ||| Sbjct 21429 ATAAAATCAAAGGGATTTTCTGCCTGAAAAATCTTTGAGA-ATCCAAGTTCTATAAGTAA 21371 Query 13491 TCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTT 13550 ||| ||||| | ||||||||| || || | | ||| || | || || || || || Sbjct 21370 TCTGTCAGCTACAAACTCAATGTACTGTTTCGTCAAAACATAGTTAATTCCAATGAGGCC 21311 Query 13551 TACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAAT 13610 ||||| | | |||||||| || | || || ||||| || || || Sbjct 21310 AACAGGCAAGGCTTCTGTTAAAAACTCCTGCTCAATTTGAACAGCATCAGCAATGATTTC 21251 Query 13611 CTTAATAATGTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATC 13670 | | | |||| | ||||| || || | ||| || | || ||||| || Sbjct 21250 CCTCACTCTGTCTTCTGAAGG-----CTTGTA----CTGAAACATCAGGCAGGCAAAGTC 21200 Query 13671 ACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAA 13730 ||| ||||| || ||||| || || || ||||| |||||||| || | | | ||||| | Sbjct 21199 ACAGTGAAGACCTTCATCCCTGCTGATCAGTTCATTTGAAAAAGTCAGTTCAGGCATGAG 21140 Query 13731 TCCTCGtttttttAACCAAAATATT 13755 |||| || |||| ||| |||||| Sbjct 21139 GCCTCTCTTCTTTAGCCAGAATATT 21115 >seq17 Length=136257712 Score = 147 bits (162), Expect = 2e-30 Identities = 397/607 (65%), Gaps = 19/607 (3%) Strand=Plus/Plus Query 13642 AGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGT 13701 || || || || || | || ||| | || || || | ||||| ||||| ||||||| Sbjct 93987684 AGGTGCTTGAACATCAGCCAGGCAGAGTCCCAGTGTAAACCCTCGTCTCTGCTAATAAAC 93987743 Query 13702 TCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCG 13761 || || |||| ||| | || ||||| || || || || | ||| ||||| | || Sbjct 93987744 TCATTGGAAAGTGTAAGGCCCAACATCAGTCTGCGATTCTTGAGCCAGAATATCGATGC- 93987802 Query 13762 AATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAAC 13821 |||||| | ||| || || |||||||| || | | || ||||||| | Sbjct 93987803 -----------AAAGAAGACTCCTTCCACCGCAGCAAAGGCCACAACTCATTCTCCATAT 93987851 Query 13822 GATGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAA---AA 13878 || | | ||||| |||| ||||| |||| || || || | | || Sbjct 93987852 GAGGACTCTTTGTCCCCAGTCCAACGCAAGGCCCAGTCAGCCTTCTTCTTCTTCACACAA 93987911 Query 13879 TCCATTGTTTCGATTGCATTGAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTA 13938 |||||||| || |||||||| | || ||| | || || | | | |||||| || Sbjct 93987912 GGCATTGTTTAAATAGCATTGAAGAGATATTCTCTTTCCTTGGGATCTTTAATGTACGTG 93987971 Query 13939 TCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAA 13998 |||||||| || ||||||||||||||||||||||| || || | || || ||||| Sbjct 93987972 TCAATAAGGGGACTGTACATTTCAGAGTGTATGTTTTCCATGGCAGTTTGGAAGCCATAG 93988031 Query 13999 AAACATCTAGCTTCTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTA 14058 ||||| | || |||| ||| || || | ||||| || ||||||||||||| Sbjct 93988032 AAACAGCGGGCCTCTGTAACTTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTG 93988091 Query 14059 ACAATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCA 14118 || || |||||||| |||||||| || |||| |||| ||||| | | ||| || Sbjct 93988092 ACTATGCCATCACTCGCTGCAAAGAAAGCCAGAATGTGAGCTATAAAATGTCTCTCATCC 93988151 Query 14119 TTGTTGAGTTTTTTCCAATCGGCTAAAT--CCTTAGAAAGATCTACTTCATCAACTGTCC 14176 || || || ||| | | | ||| |||| ||||| || || | | | |||| Sbjct 93988152 AGTTTCAGAGCTTCCCAGT--GTTGAATACCCTTGGAAAGGTCCACCTTCTTGGCAGTCC 93988209 Query 14177 AAAAACTAGCGACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAA 14236 |||| || ||||||| || ||||| ||| || || | ||| || ||||| | Sbjct 93988210 AAAAGGAGGCCTCAGCTTTCTTGTACATCTGCCAGATATCATGGTATTCAATGGGAAAGA 93988269 Query 14237 CTACAAA 14243 | ||||| Sbjct 93988270 CAACAAA 93988276 >seq7 Length=104786220 Score = 102 bits (112), Expect = 8e-17 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 13684 TCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttttt 13743 ||||| || || || ||||| |||||||| || | ||| ||||| | |||| || ||| Sbjct 35873931 TCATCCCTGCTGATCAGTTCATTTGAAAAAGTCAGTCCAGGCATGAGGCCTCTCTTCTTT 35873990 Query 13744 AACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGC 13802 | ||| ||||||||||| |||||||| || ||||| ||||| || || |||||||| || Sbjct 35873991 AGCCAGAATATTGCAGCAAATGATCCAGAGAAGAAAATTCCTTCCACAGCAGCAAAGGC 35874049 >seq4 Length=114123490 Score = 102 bits (112), Expect = 8e-17 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741 |||| ||||| |||||||| || || |||||||| | || ||||||| || ||||| | Sbjct 16582949 CCTCGTCTCTGCTAATAAGCTCATTGGAAAATGTAAGGCCCGGCATCAGCCCCCGTTTCT 16582890 Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801 | | ||| ||||||| || || || ||||||||||| ||||| || || || ||||| | Sbjct 16582889 TGAGCCAGAATATTGATGCAAAAGAACCGGAAAAGAAGATTCCTTCTACGGCGGCAAAGG 16582830 Query 13802 CTATTAGTCGTTCTCC 13817 | | | |||||||| Sbjct 16582829 CCACAACGCGTTCTCC 16582814 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478556471326560