Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26] 5,404 sequences; 2,625,587,472 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq3385 288 1e-72 seq17 273 3e-68 seq14 233 3e-56 seq18 111 2e-19 seq4 111 2e-19 seq7 107 3e-18 seq3 93.3 6e-14 >seq3385 Length=62036 Score = 288 bits (318), Expect = 1e-72 Identities = 598/891 (67%), Gaps = 12/891 (1%) Strand=Plus/Minus Query 41761 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTC 41820 ||| ||| | | | | || || ||| || ||||| || || ||||| || || ||||| Sbjct 20963 CATGACTGCAAATCTCTGATACTCAGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTC 20904 Query 41821 CAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCC 41880 ||||| || || ||||| |||||||| ||||| | | | |||| ||| ||||| Sbjct 20903 TAATGAAATGTTCTCCATAAAATCAAAGGGATTTTCTGCCTGAAAAATCTTTGAGAATCC 20844 Query 41881 CAATTCAGAAATCAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATT 41940 | ||| || ||||| || || | || || || || |||| ||| || | || Sbjct 20843 AAGTTCTATAAGTAATCTGTCAGCTACAAACTCAATGTACTGTTTCGTCAAAACATAGTT 20784 Query 41941 CATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGC 42000 ||||| || || ||| || | || | || | ||| || || ||||| || || Sbjct 20783 AATTCCAATGAGGCCAACAGGCAAGGCTTCTGTTAAAAACTCCTGCTCAATTTGAACAGC 20724 Query 42001 GTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACAT 42060 || | || || || ||| | ||||| || ||| | |||||| Sbjct 20723 ATCAGCAATGATTTCCCTCACTCTGTCTTCTGAAGGCTTGTAC---------TGAAACAT 20673 Query 42061 CAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGT 42120 || || || || || ||||| ||||| ||||| || || || | ||| || ||||| || Sbjct 20672 CAGGCAGGCAAAGTCACAGTGAAGACCTTCATCCCTGCTGATCAGTTCATTTGAAAAAGT 20613 Query 42121 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAA 42180 ||| | ||||| ||||| | ||| || ||||| ||||| | |||||||||||||| || Sbjct 20612 CAGTTCAGGCATGAGGCCTCTCTTCTTTAGCCAGAATATTGCAGCAAATGATCCAGAGAA 20553 Query 42181 GAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCA---CTGTC 42237 | | |||||||| || || |||||||| | | ||| || ||| || | || || Sbjct 20552 GGAAATTCCTTCCACAGCAGCAAAGGCCACCACTCTTTCCCCAAAAGTAGATTTCCTATC 20493 Query 42238 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 42297 |||||| ||||||| || || || || || ||| | ||||| ||||| || || Sbjct 20492 TGCTATCCAGCGCAGAGCCCAGTCCGCTTTTTTCTTAACATATGGCATTGTTTCAATTGC 20433 Query 42298 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATA 42357 ||||| | | | | ||| || |||| | | || || || || | | ||| || Sbjct 20432 GTTAAATAAAAATTCCCTTTTCTTTGGATCTCTGATGTAAGTGTCTATTAGTAAACTGTA 20373 Query 42358 CATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGT 42417 ||| ||||| |||| || || ||| |||||||| || ||||| || | ||| | Sbjct 20372 CATCTCTGAGTGAACATTCTCGATGAGAATCTGAAAGCCATAGAAGCAGTGAGTCTCCGG 20313 Query 42418 AACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGC 42477 |||||| || || || ||| || || | || ||||| || || ||||| |||||||| Sbjct 20312 AACCTGCACCTCCTGACTAAAACGCTCCACCAAGTTTTCATTTACAATTCCATCACTGGC 20253 Query 42478 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCA 42537 ||||||||| || || | || ||||| || || ||||| | | | | || ||||| Sbjct 20252 TGCAAAAAAGGCTAAGATGTGGGAGATAAAGTACTTCTCGTCGGATTTAAGCTTGTTCCA 20193 Query 42538 ATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTT 42597 | | || || || || | || || |||||| | ||||| || ||||| ||| | Sbjct 20192 GTGAGGGAGGTCCTTTGACAAGTCAACCTCTTCTTCTGTCCAGAAAGATGCCCGTGCTTG 20133 Query 42598 TTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCT 42648 |||||||| ||||||||||| |||| || ||||| || || ||||| || Sbjct 20132 CTTATACATTCTCCAGATATCAGGATACTGGATTGGAAAGATGACAAACCT 20082 >seq17 Length=136257712 Score = 273 bits (302), Expect = 3e-68 Identities = 635/944 (67%), Gaps = 35/944 (4%) Strand=Plus/Plus Query 41719 TTAAAAGTCAACATCTAAAGAAAAATGATTGTCT-TCT--TGAGACATAACTCCCATTTT 41775 ||| |||||| ||| || | |||| ||| ||| || | ||||| |||||||| | Sbjct 93987351 TTAGAAGTCAGCATGCAAGGTAAAAGAATTCTCTGTCAAATTCGACATGACTCCCATCCT 93987410 Query 41776 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTTTC 41835 || || || || || | || || || || | || |||||||| | ||| |||||||| Sbjct 93987411 CTGATACTCGCCTACTTGCTTCTCAAAGAAGTCTGTTTTTCCTTCTAGTGAAATATTTTC 93987470 Query 41836 CATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCA---GAAAT 41892 |||||| ||||| ||||| || | |||| || |||| |||| || | || Sbjct 93987471 CATGAAGTCAAATGGATTTTCTACTCTGAAAATCTTCTTAACACCCAGCTCCAGTGGAAG 93987530 Query 41893 CAATCTATCTGCGATGAA-TTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAA 41951 | || || || | || ||| || || ||||||| |||||| || | | Sbjct 93987531 C---CTGTCAGCCAAAAAATTCAATGTACTGCTTCATCAAAGTGCAATTCGCCCCGAAGA 93987587 Query 41952 GTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGT-TATA 42010 | || || || | |||| | || ||||| || || | || || | || || | | Sbjct 93987588 GCTTCACAGGCAAAGCCTCCGTGAGAAACTCCTGCCCTATCCTAACAGTGTTGGTGTTTT 93987647 Query 42011 ATAGATCTTACTGTTT-CTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGC 42069 || | ||||||||| || || | | | | | | | || || ||||||| || || Sbjct 93987648 ATTTCTTTTACTGTTTGCTCCAATGGCTTG-TGTACCAGGTGCTTGAACATCAGCCAGGC 93987706 Query 42070 GAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGG 42129 | || ||||| | |||||| ||||| ||||| || || ||||||| || || || Sbjct 93987707 AGAGTCCCAGTGTAAACCCTCGTCTCTGCTAATAAACTCATTGGAAAGTGTAAGGCCCAA 93987766 Query 42130 CATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCC 42189 ||| || | || || || ||||| ||||| || ||||| ||||| ||| Sbjct 93987767 CATCAGTCTGCGATTCTTGAGCCAGAATATCGATGCAAA------------GAAGACTCC 93987814 Query 42190 TTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CACTGTCATGTATCCA 42246 ||| || || |||||||| | || || |||||||| || | |||| |||| Sbjct 93987815 TTCCACCGCAGCAAAGGCCACAACTCATTCTCCATATGAGGACTCTTTGTCCCCAGTCCA 93987874 Query 42247 CTTTTGAGCCCAATCGGCCTTCTTTTTT---ACACAAGGCATCGTTTCTATGGCATTAAA 42303 ||||| || |||||||| || ||||||||||| |||| || ||||| || Sbjct 93987875 ACGCAAGGCCCAGTCAGCCTTCTTCTTCTTCACACAAGGCATTGTTTAAATAGCATTGAA 93987934 Query 42304 GAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTC 42363 |||||| | | |||| || |||||||| || || || || | |||| |||||||| Sbjct 93987935 GAGATATTCTCTTTCCTTGGGATCTTTAATGTACGTGTCAATAAGGGGACTGTACATTTC 93987994 Query 42364 TGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTG 42423 || || |||||||| ||||| | || || || |||||||| | |||||| ||||| || Sbjct 93987995 AGAGTGTATGTTTTCCATGGCAGTTTGGAAGCCATAGAAACAGCGGGCCTCTGTAACTTG 93988054 Query 42424 TACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAA 42483 |||||| | |||||| || | || ||||| || ||||| || ||||| |||||||| Sbjct 93988055 AACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTGACTATGCCATCACTCGCTGCAAA 93988114 Query 42484 AAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCATT 42543 || |||| | || |||||||| | | || ||| || || | |||| | || Sbjct 93988115 GAAAGCCAGAATGTGAGCTATAAAATGTCTCTCATCCAGT-TTCAGAGCTTCCCAGTGTT 93988173 Query 42544 G-ATATCTTTAGATATATCTA-CTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTA 42601 | ||| | || || | || | |||||| | |||||||| || || || || || || Sbjct 93988174 GAATACCCTTGGAAAGGTCCACCTTCTT-GGCAGTCCAAAAGGAGGCCTCAGCTTTCTTG 93988232 Query 42602 TACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAA 42645 ||||| | |||||||||||| |||| ||| || || | |||||| Sbjct 93988233 TACATCTGCCAGATATCATGGTATTCAATGGGAAAGACAACAAA 93988276 Score = 114 bits (126), Expect = 2e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 71143 ACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACT 71202 || |||||||| || ||||| ||||| |||||||| || ||||||||||| || || | Sbjct 91856955 ACCTGAAATTCCCCTGACAAGACTCTTCGAGTGTAGATGTTACTGGTATAAGGCTCAATG 91856896 Query 71203 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGA 71262 ||||||||||| |||| ||| || |||||||| ||||| ||||| || || | | || | Sbjct 91856895 GACTCATTATTCCCCAGAATCTGGGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 91856836 Query 71263 CTATTTCTAAGACCAT 71278 || || || | ||||| Sbjct 91856835 CTGTTCCTTATACCAT 91856820 Score = 104 bits (114), Expect = 3e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 71374 GATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAAT 71433 ||||| |||| || || || || || | | | |||||||||||| || || || | Sbjct 91853968 GATCCCTCATACGTTTCATAGGGGCCATACTCCTTGGCTAGTTCACAGCTGGCTTCCAGG 91853909 Query 71434 GCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCA 71493 |||||||| ||||||||||| || |||| |||||| | || ||||| ||||| ||| Sbjct 91853908 GCTCCATAGTAAATGGTTTCAAAGATCTGCTTATTTAATAACTGGGCTTCTGGGCTCTCA 91853849 Query 71494 AATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGT 71553 || || || | | || || || || |||||||| ||||| || ||||| || || || Sbjct 91853848 AAGGGGTATCTCATCAGGATGAAAGCATCTGCTAAACCTTGTACCCCAATTCCAATGGGA 91853789 Query 71554 CTGTGTCTCTTATTAGA 71570 | || | ||||| || Sbjct 91853788 CGATGGCGTTTATTTGA 91853772 Score = 89.7 bits (98), Expect = 7e-13 Identities = 115/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 72397 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 72456 ||||||| || | || | || || ||||| || | |||||||| || || || ||| Sbjct 91844438 CTAGACAGCTGTGGGCGGTTGGTCCCAGCATTGAAGAGAGTAGGAGAGGCATGAGTGAAC 91844379 Query 72457 CATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATT 72516 || || ||||| ||||| ||||| || ||||| || | || ||||| || || || Sbjct 91844378 CACTTCTCAGAAAGTAGGTTGTAGGTTTCAATTGCAGCATCAATATCTTCTTTGTGAATC 91844319 Query 72517 CCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCA 72555 || || | || | ||| ||||||||||| ||||||||| Sbjct 91844318 CCCACAGAAACCCTCATCAACATATGCTGTGGTCTTTCA 91844280 Score = 87.8 bits (96), Expect = 2e-12 Identities = 122/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 70868 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATAT 70927 |||| ||||| || |||||||| || |||||| ||| | || || || || || || | Sbjct 91860047 TCCAACCGTAGAAGTGCATACTAGTGAGTTTGCCGTAGTTGGGCTCAGCAATATGGATGT 91859988 Query 70928 TCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 70987 | | ||||| || ||||||||||| || || || || || ||||| || | | |||| Sbjct 91859987 TTAAAGACTGGCTCTGATCGATGAAAGCACCTCTCTCGGCTGCCATCTTGAGAACAGTCT 91859928 Query 70988 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 71038 | || | |||||||| | || ||||| | | |||| | || || |||| Sbjct 91859927 TCTGAGAGATTTCCCACACGGTCTTATAGAGTTGCTTCAGGTCATCAGGAA 91859877 >seq14 Length=152946536 Score = 233 bits (258), Expect = 3e-56 Identities = 616/928 (66%), Gaps = 28/928 (3%) Strand=Plus/Plus Query 41719 TTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGAG---ACATAACTCCCATTTT 41775 |||||||||| || | || | |||| ||| | || | || |||| || ||||| Sbjct 69609683 TTAAAAGTCAGCACCCAAGGTAAAAGAATTCT-TTGTGGAATTCACATGACGCCCATCCA 69609741 Query 41776 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTTTC 41835 || || || || || || || || || || || ||||||||||| ||||| |||||||| Sbjct 69609742 CTGATACTCGCCTACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAATGAAATATTTTC 69609801 Query 41836 CATGAAATCAAACGGATTGGTAACATT-ATAAAtttttttAAATCCCAATTCAGAAATCA 41894 |||||| ||||| ||||| || | |||| || ||||| |||| || || | Sbjct 69609802 CATGAAGTCAAATGGATTTCCTACTCCGAAAAATCTTGTTAAAACCCAGCTCCAGCATAA 69609861 Query 41895 ATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTT 41954 ||||| || | ||||| || || ||||||| || ||||| | || || Sbjct 69609862 GCCTATCGGCCACAAATTCAATGTACTGCTTCATCAAAGTGCAGTTCATCTCGATGAGCA 69609921 Query 41955 TAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGA-CCGCGTCTGTTATAATA 42013 | || || | ||| | | || | | || || || | || ||| || || || Sbjct 69609922 TCACAGGCAAGGCCTCCATGAGGATCCCCTGCTCTATCCCTAACCTCGTTGGTGATTATT 69609981 Query 42014 GATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAA 42073 | ||||| | |||| | | | | | | | || || ||||||| | | || Sbjct 69609982 TCTTTTACTCTG-CTTCGATGGCTTG-TGTACCAGGTGCTTGAACATCAGGTAGACAAAG 69610039 Query 42074 TCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATT 42133 || ||||| | ||||| ||||| ||||| | || |||||||| || | || ||||| Sbjct 69610040 TCCCAGTGTAAACCCTAGTCTCTGCTAATAAGCTCATTGGAAAATGTAGGGCCCGGCATC 69610099 Query 42134 AGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAA-GAAGATTCCTTC 42192 || || | || || ||||| ||||| || ||||| || |||||||| ||||||| |||| Sbjct 69610100 AGCCCCTGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAAGAAGATTGCTTC 69610159 Query 42193 TACTGCCGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCACTGTCATGTATCCACTT 42249 ||| | |||||||| | || || ||| |||| | | | |||| |||| | Sbjct 69610160 TACCGTGGCAAAGGCCACAACTCGTTCTGCATATGTAACTTCTTTGTCCCCAGTCCAATG 69610219 Query 42250 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATA 42309 ||||| || ||||||| |||| ||||| ||||| || ||||| || ||||| Sbjct 69610220 CAAGGCCCAGTCAGCCTTCT------CACA-GGCATTGTTTCAATAGCATTGAAAAGATA 69610272 Query 42310 GtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATG 42369 | | |||| || |||||||| || | || || | ||||| ||||||| || || Sbjct 69610273 TTCTCTTTCTTTGGGATCTTTAATGTAAATGTCAATAAGGAGACTGTACATTTTAGAGTG 69610332 Query 42370 AATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTC 42429 || |||| || | | | || || || ||||||| ||||| ||||| || ||||| Sbjct 69610333 TATCCTTTCCCTGCCAGTTTAGAAGCCATA-AAACATCCAGCCTCTGTAACTTGAACTTC 69610391 Query 42430 TGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGC 42489 | | |||||| || | || ||| |||| | ||| || ||||| |||||||| || || Sbjct 69610392 TTGGCTAAATCGCTCCACCAAGTTTGCGTTGAGTATGCCATCACTCGCTGCAAAGAAAGC 69610451 Query 42490 CAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCATTGATATC 42549 || ||||| |||||||| | | || | | | | | ||| | |||| || Sbjct 69610452 CAGAACATGAGCTATAAAATTTCTGTCATTCAGAGCT-------TCCCAGTGCTGATCTC 69610504 Query 42550 TTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATT 42609 || || | || || || || | |||||||| | || || || || || ||||| | Sbjct 69610505 CTTGGAAAGGTCCACCTCCTCATCAGTCCAAAAGGTGGCCTCAGCTTTCTTGTACATCTG 69610564 Query 42610 CCAGATATCATGATATTGAATTGGGAAA 42637 |||||||||||| || | | ||||||| Sbjct 69610565 CCAGATATCATGGTACT-AGATGGGAAA 69610591 >seq18 Length=130317789 Score = 111 bits (122), Expect = 2e-19 Identities = 294/447 (66%), Gaps = 8/447 (2%) Strand=Plus/Minus Query 89513 CATCATGAACGGTGGACATATTCAGTTGATAATCGGCCCCATGTTTTCAGGTAAAAGTAC 89572 || || || | | || || |||||| |||| |||| |||||||| ||||| ||||| || Sbjct 127349086 CAGCAAGACCCGGGGGCAGATTCAGGTGATTTTCGGGCCCATGTTCTCAGGGAAAAGCAC 127349027 Query 89573 AGAATTAATTAGACGAGTTAGACGTTATCAAATAGCTCAATATAAATGCGTGACTATAAA 89632 || | || ||| |||| || || | || || || || || || ||| || || || Sbjct 127349026 GGAGCTGATGAGAAGAGTCAGGCGCTTCCAGATCGCCCAGTACAAGTGCCTGGTCATCAA 127348967 Query 89633 ATATTCTAACGATAATAGATACGGAACGGGACTATGGACACATGATAAGAATAATTTTGA 89692 ||| | || || | | || | | | | | ||||||||| ||| | | || Sbjct 127348966 GTATGCCAAAGACACGCGCTATAGCAACAGCTTCTCCACACATGATCGGAACACCATGGA 127348907 Query 89693 AGCATTGGAAGCAACTAAACTATGCGATGTCATGGACGCAGT--TACA--GATTTCTCTG 89748 |||||| ||| || ||||||| ||| ||| | | | | | | | Sbjct 127348906 CGCATTGCCAGCCTGCCTGCTCCGCGATGT----GACCCAGGAGTCCTTGGGTGTGGCCG 127348851 Query 89749 TGATAGGTATCGATGAAGGACAGTTCTTTCCAGACATTGTTGAATTCTGTGAGCGTATGG 89808 | || || ||||||||||| ||||| ||||| |||||||| || |||||||| |||| Sbjct 127348850 TCATTGGCATCGATGAAGGGCAGTTTTTTCCTGACATTGTGGATTTCTGTGAAATGATGG 127348791 Query 89809 CAAACGAAGGAAAGATAGTTATAGTAGCCGCACTCGATGGGACATTTCAACGTAAACCGT 89868 | ||||| || |||| ||| || || || ||||| |||||||| || || | || | | Sbjct 127348790 CCAACGAGGGCAAGACAGTAATTGTGGCAGCACTGGATGGGACTTTCCAGAGGAAGGCTT 127348731 Query 89869 TTAATAATATATTGGATCTTATTCCATTATCTGAAATGGTGGTAAAACTAACTGCTGTGT 89928 | | || ||| | || | || | | || | ||||| || || || ||||||| Sbjct 127348730 TCGGCAGCATCTTGAACCTGGTGCCCCTGGCGGAGAGTGTGGTGAAGCTCACCGCTGTGT 127348671 Query 89929 GTATGAAATGCTTTAAGGAGGCTTCCT 89955 | ||| | |||||| || ||| ||| Sbjct 127348670 GCATGGAGTGCTTTCGAGAAGCTGCCT 127348644 >seq4 Length=114123490 Score = 111 bits (122), Expect = 2e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||| ||||| ||||| | || |||||||| || || || ||||| || || || || | Sbjct 16582949 CCTCGTCTCTGCTAATAAGCTCATTGGAAAATGTAAGGCCCGGCATCAGCCCCCGTTTCT 16582890 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||| ||||| || ||||| || || |||||||||||||||||||| || ||||||| Sbjct 16582889 TGAGCCAGAATATTGATGCAAAAGAACCGGAAAAGAAGATTCCTTCTACGGCGGCAAAGG 16582830 Query 42207 C 42207 | Sbjct 16582829 C 16582829 Score = 89.7 bits (98), Expect = 7e-13 Identities = 104/138 (75%), Gaps = 3/138 (2%) Strand=Plus/Minus Query 41719 TTAAAAGTCAACATCTAAAGAAAAATGATTGTCT-TCT--TGAGACATAACTCCCATTTT 41775 ||| |||||| |||| || | |||| || ||| || | ||||| |||||||| | Sbjct 16584336 TTAGAAGTCAGCATCCAAGGTAAAAGAGTTCTCTGTCGAATTCGACATGACTCCCATCCT 16584277 Query 41776 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTTTC 41835 || || || || || || || || || || || ||||||||||| | ||| |||||||| Sbjct 16584276 CTGATACTCGCCTACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAGTGAGATATTTTC 16584217 Query 41836 CATGAAATCAAACGGATT 41853 |||||| ||||||||||| Sbjct 16584216 CATGAAGTCAAACGGATT 16584199 Score = 89.7 bits (98), Expect = 7e-13 Identities = 104/138 (75%), Gaps = 3/138 (2%) Strand=Plus/Minus Query 41719 TTAAAAGTCAACATCTAAAGAAAAATGATTGTCT-TCT--TGAGACATAACTCCCATTTT 41775 ||| |||||| |||| || | |||| || ||| || | ||||| |||||||| | Sbjct 16585149 TTAGAAGTCAGCATCCAAGGTAAAAGAGTTCTCTGTCGAATTCGACATGACTCCCATCCT 16585090 Query 41776 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTTTC 41835 || || || || || || || || || || || ||||||||||| | ||| |||||||| Sbjct 16585089 CTGATACTCGCCTACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAGTGAGATATTTTC 16585030 Query 41836 CATGAAATCAAACGGATT 41853 |||||| ||||||||||| Sbjct 16585029 CATGAAGTCAAACGGATT 16585012 >seq7 Length=104786220 Score = 107 bits (118), Expect = 3e-18 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 42089 TCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 42148 ||||| || || || | ||| || ||||| || ||||| ||||| ||||| | ||| || Sbjct 35873931 TCATCCCTGCTGATCAGTTCATTTGAAAAAGTCAGTCCAGGCATGAGGCCTCTCTTCTTT 35873990 Query 42149 AGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGC 42207 ||||| ||||| | |||||||||||||| ||||| |||||||| || || |||||||| Sbjct 35873991 AGCCAGAATATTGCAGCAAATGATCCAGAGAAGAAAATTCCTTCCACAGCAGCAAAGGC 35874049 >seq3 Length=125065471 Score = 93.3 bits (102), Expect = 6e-14 Identities = 207/306 (68%), Gaps = 16/306 (5%) Strand=Plus/Plus Query 174402 CTTTTGCCAACACAGAGGGTGGATATTTGTTCATTGGAGTTGATAATAATACACACAAAG 174461 ||||||| ||||| || || |||| |||||||||||| | ||| || || || || Sbjct 83413526 CTTTTGCAAACACGGATGGGGGATTTTTGTTCATTGGTTTGGATGGCAAAACCCAGCAAA 83413585 Query 174462 TAATTGGATTC-ACGGTGGGTCACGA-CTACCTCAGACTGGTAGAGAATGATATAGAAAA 174519 | ||||| || | | | | | || | | ||| || |||||| ||| |||||||| Sbjct 83413586 TTATTGGTTTTGAAGCAGAG--AAGAGCGATCTCGTGCTTCTAGAGAGTGAAATAGAAAA 83413643 Query 174520 GCATATCAAAAGACTTCGTGTTGTGCATTTCTGTGAGAAGAAAGAGGACATCAAGTACGC 174579 ||| ||| || | ||| || ||||||||| |||| ||| | ||||||||| | Sbjct 83413644 GCACATCCGGCAGCTGCCTGTCACTCACTTCTGTGAGGAGAAGGAGAAGATCAAGTACAC 83413703 Query 174580 GTGTCGATTCATCAAGGTATATAAACCTGGGGATGAGACTACCTCGACATACATGTGTGC 174639 ||| ||||||| | || | ||| | || | || | | |||| ||||||| Sbjct 83413704 GTGCAAATTCATCGAAGTGCACAAATCCGGAGCTGTG------TGTGCATATGTGTGTGC 83413757 Query 174640 TATCAAAGTGGAAAGATGCTGTTGTGCTGTGTT---TGCAGATTGGCCAGAATCATGGTA 174696 ||| |||||| |||| ||| ||||| || || |||||| ||| || || ||| | Sbjct 83413758 GCTCAGAGTGGAGAGATTCTGCTGTGCAGTATTCGCTGCAGA---GCCCGAGTCCTGGCA 83413814 Query 174697 TATGGA 174702 | |||| Sbjct 83413815 TGTGGA 83413820 Score = 86.0 bits (94), Expect = 8e-12 Identities = 202/304 (66%), Gaps = 12/304 (4%) Strand=Plus/Plus Query 174402 CTTTTGCCAACACAGAGGGTGGATATTTGTTCATTGGAGTTGATAATAATACACACAAAG 174461 ||||| ||||||| || || ||||||||||||||||| | ||| || || || || Sbjct 83590141 CTTTTACCAACACTGAAGGGGGATATTTGTTCATTGGTTTGGATGGCAAAACCCAGCAAA 83590200 Query 174462 TAATTGGATTCACGGTGGGTCACGACTACCTCAGACTGGTAGAGAATGATATAGAAAAGC 174521 | ||||| || | | | || | ||| || |||||| ||| ||||||||| Sbjct 83590201 TTATTGGTTTTGAAGCAGAGAAGAACGATCTCGTGCTTCTAGAGAGTGAAATAGAAAAGT 83590260 Query 174522 ATATCAAAAGACTTCGTGTTGTGCATTTCTGTGAGAAGAAAGAGGACATCAAGTACGCGT 174581 ||| || || | ||| || ||||||| |||||| ||| | || || ||| | | Sbjct 83590261 GCATCCAACAGCTGCCTGTCACTCACTTCTGTGGGAAGAAGGAGAAGATAAAATACACAT 83590320 Query 174582 GTCGATTCATCAAGGTATATAAACCTGGGGATGAGACTACCTCGACATACATGTGTGCTA 174641 | ||||||| | || | ||| | || | || | | |||| ||||||| Sbjct 83590321 GCAAATTCATCGAAGTGCACAAATCCGGAGCTGTG------TGTGCATATGTGTGTGCGC 83590374 Query 174642 TCAAAGTGGAAAGATGCTGTTGTGCTGTGTT---TGCAGATTGGCCAGAATCATGGTATA 174698 ||| |||||| |||| ||| ||||| ||||| |||||| ||| || || ||| | Sbjct 83590375 TCAGAGTGGAGAGATTCTGCTGTGCAGTGTTCGCTGCAGA---GCCCGAGTCCTGGCACG 83590431 Query 174699 TGGA 174702 |||| Sbjct 83590432 TGGA 83590435 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671093864547040