Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26] 5,404 sequences; 2,625,587,472 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq18 145 1e-29 seq17 143 4e-29 seq3385 127 3e-24 seq14 116 5e-21 >seq18 Length=130317789 Score = 145 bits (160), Expect = 1e-29 Identities = 379/576 (66%), Gaps = 8/576 (1%) Strand=Plus/Plus Query 70053 CCGACAGACAAGAGGGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCA 70112 |||||||| | || || ||||| ||||| || || ||||| |||||||| | || Sbjct 85151112 CCGACAGAAA----GGGGACCTGGGCCCAGTTTATGGTTTCCAATGGAGGCATTTTGGAG 85151167 Query 70113 CCAAGTATGTAGACTGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAATTGCAGACAA 70172 | |||| ||| || |||| || |||| || || || || || |||| | || Sbjct 85151168 CAGAGTACAAAGATATGGATTCAGATTACCCGGGACAAGGAGTAGACCAGCTGCAAAAAA 85151227 Query 70173 TCATTGACACTCTCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATC 70232 | |||||||| |||| ||||| || || || || ||| | ||||| | ||||| | Sbjct 85151228 TGATTGACACCATCAAAACCAACCCTGATGACAGAAGAATCATCATGTGTGCCTGGAACC 85151287 Query 70233 CTGCAGATTTGCACCAAATGGCACTACCACCGTGTCA--CTGTTTGGCTCAGTTTTACTC 70290 | |||| | | || |||||||| || || || || | | || |||||| || Sbjct 85151288 CAAAAGATCTTCCCCTGATGGCACTGCCTCCTTGCCATGCCCTCTG--TCAGTTCTATGT 85151345 Query 70291 GTACGATGGCAAATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGT 70350 | |||| | |||| ||| | | || |||||| | || ||||| || || || Sbjct 85151346 GGTGAATGGGGAGCTGTCTTGCCAACTTTACCAGAGGTCAGGAGATATGGGTCTGGGCGT 85151405 Query 70351 ACCCTTTAACATTGCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTACCGGCCT 70410 || || |||||||| |||||| || || | || |||||||||| || || || || || Sbjct 85151406 GCCTTTCAACATTGCCAGCTATGCTCTGCTCACCTACATGATTGCACATATCACAGGTCT 85151465 Query 70411 GAAAGCGCACGAGTTCGTACACACCATTGGCGACGCTCACGTGTATTTAAATCACATCGA 70470 | | | || || || ||||| | || || || || | || | ||||| || || Sbjct 85151466 GCAGCCAGGTGATTTTGTCCACACTTTGGGAGATGCACATATTTACCTGAATCATATAGA 85151525 Query 70471 GCCATTAAAGGTGCAACTCGAACGGGAGCCGAGACCTTTTCCCAAGCTGGAGTTTGCTCG 70530 ||| | || | || || | || || || |||||||| || ||||| | | ||| Sbjct 85151526 GCCGCTGAAAATTCAGCTACAGCGAGAACCAAGACCTTTCCCAAAGCTCAAAATCCTTCG 85151585 Query 70531 TAAAGTTGAAAATATTGACAGTTTTAAGTACGAAGATTTTATAATAAAAGGTTACGATCC 70590 |||||||| | || || ||| || ||||| ||| || |||| || |||| Sbjct 85151586 AAAAGTTGAGACAATCGATGATTTCAAAGTTGAAGACTTTCAGATTGAAGGGTATAATCC 85151645 Query 70591 ATACCCTAAGATTCCCATGGTTCTGGCTGTTTAGAG 70626 | | || | |||| |||| ||||||||||||| Sbjct 85151646 ACATCCAACGATTAAAATGGAAATGGCTGTTTAGAG 85151681 >seq17 Length=136257712 Score = 143 bits (158), Expect = 4e-29 Identities = 385/581 (66%), Gaps = 22/581 (4%) Strand=Plus/Minus Query 124998 TTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGG 125057 |||||||| || ||||| || ||| | |||||||| || ||| |||||||||||||| Sbjct 93988267 TTTCCCATTGAATACCATGATATCTGGCAGATGTACAAGAAAGCTGAGGCCTCCTTTTGG 93988208 Query 125058 ACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAA 125117 || | | | |||| || || ||||||| | | | ||||| ||| | |||| | Sbjct 93988207 ACTGCCAAGAAGGTGGACCTTTCCAAGGGTATTCAACACTGGGAAGCTC-TGAAACTGGA 93988149 Query 125118 ACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTC 125177 |||| || | |||||| | |||||| |||| |||||||| | ||||| || ||| Sbjct 93988148 --TGAGAGACATTTTATAGCTCACATTCTGGCTTTCTTTGCAGCGAGTGATGGCATAGTC 93988091 Query 125178 AACGACAATCTGTTGACACGATTCTCTCAAG-AGTTGACCATTCCAGAGGTGTCGTGCTT 125236 || || || || || ||||| |||| |||| | || |||||| || || Sbjct 93988090 AATGAAAACTTGGTGGAGCGATTTAGCCAAGAAGTTCA-AGTTACAGAGGCCCGCTGTTT 93988032 Query 125237 TTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGA 125296 || || ||||||| || || ||| | ||||| ||||||||| | | || ||||| Sbjct 93988031 CTATGGCTTCCAAACTGCCATGGAAAACATACACTCTGAAATGTACAGTCCCCTTATTGA 93987972 Query 125297 CATGTACATTCGCGATCCGCAACGTAA-ACACATGCTCTTTAACGCAATCGACACGGTGC 125355 || ||||||| ||||| ||| | || | | ||||| || || || | || ||| Sbjct 93987971 CACGTACATTAAAGATCC-CAAGGAAAGAGAATATCTCTTCAATGCTATTTAAACAATGC 93987913 Query 125356 CGTCTAT-ACG--TAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTT 125412 | | | | | | || |||||| | |||| | || |||| | ||| | |||| | Sbjct 93987912 CTTGTGTGAAGAAGAAGAAGGCTGACTGGGCCTTGCGTTGGACTGGGGACAAAGAGTCCT 93987853 Query 125413 CGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTT 125472 | || | || || | ||||| || || || || || || ||||| | Sbjct 93987852 CATATGGAGAATGAGTTGTGGCCTTTGCTGCGGTGGAAGGAGTCTTC------------T 93987805 Query 125473 TTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACG 125532 |||| | || || ||||||||||| ||| |||| ||| || || || | || | Sbjct 93987804 TTGCATCGATATTCTGGCTCAAGAATCGCAGACTGATGTTGGGCCTTACACTTTCCAATG 93987745 Query 125533 AGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCC 125573 ||||||| |||||||||| ||||||| |||| |||| Sbjct 93987744 AGTTTATTAGCAGAGACGAGGGTTTACACTGGGACTCTGCC 93987704 >seq3385 Length=62036 Score = 127 bits (140), Expect = 3e-24 Identities = 550/861 (64%), Gaps = 29/861 (3%) Strand=Plus/Plus Query 124998 TTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGG 125057 ||||| ||| ||||| ||| || ||| |||||| || | || | ||| || || ||| Sbjct 20094 TTTCCAATCCAGTATCCTGATATCTGGAGAATGTATAAGCAAGCACGGGCATCTTTCTGG 20153 Query 125058 ACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAA 125117 || | |||||||| || |||| |||||||| | ||| | | | || | | Sbjct 20154 ACAGAAGAAGAGGTTGACTTGTCAAAGGACCTCCCTCACTGGAACAAGC--TTAAATCCG 20211 Query 125118 ACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTC 125177 || ||| | ||||| || ||||| || ||||| ||||| | | |||||||| || Sbjct 20212 AC-GAGAAGTACTTTATCTCCCACATCTTAGCCTTTTTTGCAGCCAGTGATGGAATTGTA 20270 Query 125178 AACGACAATCTGTTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTT 125237 || || || || || || || ||| ||| || |||| ||| ||||| Sbjct 20271 AATGAAAACTTGGTGGAGCGTTTTAGTCAGGAGGTGCAGGTTCCGGAGACTCACTGCTTC 20330 Query 125238 TACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGAC 125297 || || || || || | || ||||| || ||||| || |||||| | ||| || ||| Sbjct 20331 TATGGCTTTCAGATTCTCATCGAGAATGTTCACTCAGAGATGTACAGTTTACTAATAGAC 20390 Query 125298 ATGTACATTCGCGATCCGCAACGTAAACACA--TGCTCTTTAACGCAATCGACACGGTGC 125355 | ||||| | ||||| || | ||| | | | ||||||||||| || || ||| Sbjct 20391 ACTTACATCAGAGATCC--AAAGAAAAGGGAATTTTTATTTAACGCAATTGAAACAATGC 20448 Query 125356 CGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGT 125415 | | | | ||||| || | |||| | || ||||| | || || ||| | | Sbjct 20449 CATATGTTAAGAAAAAAGCGGACTGGGCTCTGCGCTGGATAGCAGATAGGAAATCTACTT 20508 Query 125416 ACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTG 125475 | || ||| ||||||| || || || || || || || | ||| || || |||| Sbjct 20509 TTGGGGAAAGAGTGGTGGCCTTTGCTGCTGTGGAAGGAATTTCCTTCTCTGGATCATTTG 20568 Query 125476 CGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGT 125535 | || || || ||||| |||||| | || |||||||| | |||||| || || Sbjct 20569 CTGCAATATTCTGGCTAAAGAAGAGAGGCCTCATGCCTGAACTGACTTTTTCAAATGAAC 20628 Query 125536 TTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATC 125595 | || | || || || || ||||||||||||||| || |||||| | || Sbjct 20629 TGATCAGCAGGGATGAAGGTCTTCACTGTGACTTTGCCTGCCTGATGTTTC---AGTACA 20685 Query 125596 TGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGA 125655 || | | || ||| || || | || | ||||| | ||||| || Sbjct 20686 AGCCTTCAGA----AGACAGAGTGAGGGAA--------ATCATTG---CTGATGCTGTTC 20730 Query 125656 GGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCA 125715 || || || |||||| |||| ||| || | || || || | ||||| || |||| Sbjct 20731 AAATTGAGCAGGAGTTTTTAACAGAAGCCTTGCCTGTTGGCCTCATTGGAATTAACTATG 20790 Query 125716 AGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTAC-TGTACGAGTT-GATTGG 125773 | | | ||||||| |||||||| || || | ||| | || | || |||| Sbjct 20791 TTTTGACGAAACAGTACATTGAGTTTGTAGCTGACAGATTACTTATAGAACTTGGATT-- 20848 Query 125774 CCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGG 125833 | ||||||| | || | |||||||||||||| ||| | ||| ||| |||| || Sbjct 20849 CTCAAAGATTTTTCAGGCAGAAAATCCCTTTGATTTTATGGAGAACATTTCATTAGAAGG 20908 Query 125834 TAAGACCAACTTTTTCGAGAA 125854 || || || || || ||||| Sbjct 20909 GAAAACAAATTTCTTTGAGAA 20929 >seq14 Length=152946536 Score = 116 bits (128), Expect = 5e-21 Identities = 383/581 (66%), Gaps = 31/581 (5%) Strand=Plus/Minus Query 124998 TTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGG 125057 ||||||||| ||| ||||| || ||| | |||||||| || ||| ||||| |||||||| Sbjct 69610591 TTTCCCATCTAGTACCATGATATCTGGCAGATGTACAAGAAAGCTGAGGCCACCTTTTGG 69610532 Query 125058 ACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAA 125117 || | || ||||| || || |||||||| | | | ||||| ||| |||| Sbjct 69610531 ACTGATGAGGAGGTGGACCTTTCCAAGGAGATCAGC-ACTGGGAAGCTC-------TGAA 69610480 Query 125118 ACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTC 125177 ||| || | |||||| | || || |||| |||||||| | ||||| || || Sbjct 69610479 --TGACAGAAATTTTATAGCTCATGTTCTGGCTTTCTTTGCAGCGAGTGATGGCATACTC 69610422 Query 125178 AACGACAATCTGTTGACACGATTCTCTCAAGA-GTTGACCATTCCAGAGGTGTCGTGCTT 125236 |||| || || || ||||| ||||| ||| | || |||||| || || Sbjct 69610421 AACGCAAACTTGGTGGAGCGATTTAGCCAAGAAGTTCAAG-TTACAGAGGCTGGATG-TT 69610364 Query 125237 TTACGGATTCCAAATCATGATTGAGAACG--TGCACTCGGAAATGTACTCTACACTGATT 125294 ||| || ||| ||| || | ||| | | ||||| |||||||| | || ||| Sbjct 69610363 TTATGGCTTCTAAAC--TGGCAGGGAAAGGATACACTCTAAAATGTACAGTCTCCTTATT 69610306 Query 125295 GACATGTACATTCGCGATCCGCAACGTAAACACATGCTCTTT--AACGCAATCGACACGG 125352 ||||| |||||| ||||| ||| | ||| | | ||||| || || || || || Sbjct 69610305 GACATTTACATTAAAGATCC-CAAAG-AAAGAGAATATCTTTTCAATGCTATTGAAACAA 69610248 Query 125353 TGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGAC-AAGTCT 125411 |||| || | |||||| | |||| | | |||| | ||| | |||| | Sbjct 69610247 TGCCT-------GTGAGAAGGCTGACTGGGCCTTGCATTGGACTGGGGACAAAGAAGT-T 69610196 Query 125412 TCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTT-CGGGTAG 125470 | || || || || | ||||| || ||| | ||||| | |||||||||| | ||| Sbjct 69610195 ACATATGCAGAACGAGTTGTGGCCTTTGCCACGGTAGAAGCAATCTTCTTTTTCTGGTTC 69610136 Query 125471 TTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAA 125530 |||||| | || || ||||||||||| | || || ||||| || | || || Sbjct 69610135 TTTTGCATCGATATTCTGGCTCAAGAAACAGGGGCTGATGCCGGGCCCTACATTTTCCAA 69610076 Query 125531 CGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTG 125571 ||| |||| ||||| |||| ||||||| ||||||| Sbjct 69610075 TGAGCTTATTAGCAGAGACTAGGGTTTACACTGGGACTTTG 69610035 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741009141451040