Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26] 5,404 sequences; 2,625,587,472 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq3385 316 2e-81 seq14 228 7e-55 seq17 226 2e-54 seq7 96.9 3e-15 >seq3385 Length=62036 Score = 316 bits (350), Expect = 2e-81 Identities = 584/848 (69%), Gaps = 15/848 (2%) Strand=Plus/Minus Query 12863 TGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCC 12922 ||||| || ||||| ||| ||||| || |||||||| |||||||| ||||| || ||| Sbjct 20947 TGATACTCAGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAATGAAATGTTCTCC 20888 Query 12923 ATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTACACCCTAA-TTCTAGTAACAA 12981 |||||||| || ||||||| | | | || ||| | | | || ||||| | || Sbjct 20887 ATAAAATCAAAGGGATTTTCTGCCTGAAAA-ATCTTTGAGAATCCAAGTTCTATAAGTAA 20829 Query 12982 TCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAATTT 13041 ||||||||| |||||||| |||||||||||| | ||| || |||| ||||| || | Sbjct 20828 TCTGTCAGCTACAAACTCAATGTACTGTTTCGTCAAAACATAGTTAATTCCAATGAGGCC 20769 Query 13042 TACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTATGTC 13101 ||||||| |||||||||||||| | | || || | ||| || || || || || Sbjct 20768 AACAGGCAAGGCTTCTGTTAAAAACTCCTGCTCAATTTGAACAGCATCAGCAATGATTTC 20709 Query 13102 TCTTATTACGTTCTCTAATGGAGGATTTGATAGATGCTTAAACATCATACATGCAAAATC 13161 || | | || ||| | || ||| | || |||||||| || ||||| || Sbjct 20708 CCTCACTCTGTCTTCTGAAGGC----TTG-----TACTGAAACATCAGGCAGGCAAAGTC 20658 Query 13162 ACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAG 13221 |||||| | |||||||| || || || || || |||||||| || || | ||||| || Sbjct 20657 ACAGTGAAGACCTTCATCCCTGCTGATCAGTTCATTTGAAAAAGTCAGTTCAGGCATGAG 20598 Query 13222 CCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAAC 13281 |||| || || | ||| ||||| |||||||| || || || || | |||||||| || Sbjct 20597 GCCTCTCTTCTTTAGCCAGAATATTGCAGCAAATGATCCAGAGAAGGAAATTCCTTCCAC 20538 Query 13282 TGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCT-CTATCCACTTTC 13340 || ||||| || | || ||||| ||| | ||| || || ||| ||||||| Sbjct 20537 AGCAGCAAAGGCCACCACTCTTTCCCCAAAAGTAGATTTCCTA-TCTGCTATCCAGCGCA 20479 Query 13341 TGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATAAATAAt 13400 ||||||| ||||||| ||||| | ||| |||| ||||||||||||||| | | Sbjct 20478 GAGCCCAGTCCGCTTTTTTCTTAACATATGGCATTGTTTCAATTGCGTTAAATAAAAATT 20419 Query 13401 ttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAA 13460 ||| ||| ||| || ||||| ||||| | ||| || ||||| ||||| |||| Sbjct 20418 CCCTTTTCTTTGGATCTCTGATGTAAGTGTCTATTAGTAAACTGTACATCTCTGAGTGAA 20359 Query 13461 TATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTG-AACTTCG 13519 ||| || || || || || ||||| || || || ||| | ||||| | || | Sbjct 20358 CATTCTCGATGAGAATCTGAAAGCCATAGAAGCAGTGAGTCTCCGGAACCTGCACCTCCT 20299 Query 13520 GAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCA 13579 || ||||| | || | |||||||| || || || || ||||| || |||||||| || Sbjct 20298 GACTAAAA-CGCTCCACCAAGTTTTCATTTACAATTCCATCACTGGCTGCAAAAAAGGCT 20240 Query 13580 AGTATGTGCTTAATAAAttttttttCGTTTTCTGACAACTTTAACCAATCTGGAAAATCT 13639 | ||||| ||||| | || |||| | | ||| ||| | || | || Sbjct 20239 AAGATGTGGGAGATAAAGTACTTCTCGTCGGATTTAAGCTTGTTCCAGTGAGGGAGGTCC 20180 Query 13640 TTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTATACATCATC 13699 ||||| || || ||||| || | ||||| ||||| || || | ||||||||| || Sbjct 20179 TTTGACAAGTCAACCTCTTCTTCTGTCCAGAAAGATGCCCGTGCTTGCTTATACATTCTC 20120 Query 13700 CATATATC 13707 || ||||| Sbjct 20119 CAGATATC 20112 Score = 176 bits (194), Expect = 4e-39 Identities = 271/384 (71%), Gaps = 11/384 (3%) Strand=Plus/Minus Query 12863 TGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCC 12922 ||||| || ||||| ||| ||||| || |||||||| |||||||| ||||| || ||| Sbjct 21489 TGATACTCAGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAATGAAATGTTCTCC 21430 Query 12923 ATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTACACCCTAA-TTCTAGTAACAA 12981 |||||||| || ||||||| | | | || ||| | | | || ||||| | || Sbjct 21429 ATAAAATCAAAGGGATTTTCTGCCTGAAAA-ATCTTTGAGAATCCAAGTTCTATAAGTAA 21371 Query 12982 TCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAATTT 13041 ||||||||| |||||||| |||||||||||| | ||| || |||| ||||| || | Sbjct 21370 TCTGTCAGCTACAAACTCAATGTACTGTTTCGTCAAAACATAGTTAATTCCAATGAGGCC 21311 Query 13042 TACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTATGTC 13101 ||||||| |||||||||||||| | | || || | ||| || || || || || Sbjct 21310 AACAGGCAAGGCTTCTGTTAAAAACTCCTGCTCAATTTGAACAGCATCAGCAATGATTTC 21251 Query 13102 TCTTATTACGTTCTCTAATGGAGGATTTGATAGATGCTTAAACATCATACATGCAAAATC 13161 | | || | ||| || ||| || | || |||||||| || ||||| || Sbjct 21250 CC---TCACTCTGTCTTCTGAAGGCTT------GTACTGAAACATCAGGCAGGCAAAGTC 21200 Query 13162 ACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAG 13221 |||||| | |||||||| || || || || || |||||||| || || | ||||| || Sbjct 21199 ACAGTGAAGACCTTCATCCCTGCTGATCAGTTCATTTGAAAAAGTCAGTTCAGGCATGAG 21140 Query 13222 CCCTCGTTTTTTAATCCAAAATAT 13245 |||| || || | ||| ||||| Sbjct 21139 GCCTCTCTTCTTTAGCCAGAATAT 21116 >seq14 Length=152946536 Score = 228 bits (252), Expect = 7e-55 Identities = 588/881 (67%), Gaps = 36/881 (4%) Strand=Plus/Plus Query 12863 TGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCC 12922 ||||| |||| |||| || ||||| |||||||| ||||||||||| |||||||||||| Sbjct 69609743 TGATACTCGCCTACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAATGAAATATTTTCC 69609802 Query 12923 ATAAAATCGAAAGGATTT-----TTCGAACAATAGTATTTTTTACACCCTAATTCTAGTA 12977 || || || || |||||| | |||| ||| || ||| | || | || || | Sbjct 69609803 ATGAAGTCAAATGGATTTCCTACTCCGAAAAAT----CTTGTTAAAACCCAGCTCCAGCA 69609858 Query 12978 ACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTA 13037 | || || || ||||| || |||||||| ||||| ||| |||||||| | || | Sbjct 69609859 TAAGCCTATCGGCCACAAATTCAATGTACTGCTTCATCAAAGTGCAGTTCATCTCGATGA 69609918 Query 13038 ATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATC-AACTGCTTCGATAACT 13096 | ||||||| || || | | | | ||||| | ||| | | | | | | Sbjct 69609919 GCATCACAGGCAAGGCCTCCATGAGGATCCCCTGCTCTATCCCTAACCTCGTTGGTGATT 69609978 Query 13097 ATGTCTCTTATTACGTTCTCTAATGGAGGATTTGATAGATGCTTAAACATCATACATGCA 13156 || ||| ||| | | || |||| | | || ||||| ||||||| | || Sbjct 69609979 ATTTCTTTTACT--CTGCTTCGATGGCTTGTGTACCAGGTGCTTGAACATCAGGTAGACA 69610036 Query 13157 AAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGC 13216 || || ||||| || || | ||||| || || ||||| || |||||||| | |||||| Sbjct 69610037 AAGTCCCAGTGTAAACCCTAGTCTCTGCTAATAAGCTCATTGGAAAATGTAGGGCCCGGC 69610096 Query 13217 ATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaa-aaTATTCC 13275 || ||||| |||| || | ||| ||||| | ||||| ||||| |||||| || ||| | Sbjct 69610097 ATCAGCCCCTGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAAGAAGATTGC 69610156 Query 13276 TTCAACTGCTGCAAACGCTATCAAC-CTTTCACCATACGTACTATTTTTACTCTCTATCC 13334 ||| || | ||||| || | |||| | ||| |||| ||| | ||| | | ||| Sbjct 69610157 TTCTACCGTGGCAAAGGCCA-CAACTCGTTCTGCATATGTAACTTCTTTGTCCCCAGTCC 69610215 Query 13335 ACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATA 13394 | | |||||||| || || | | ||| ||| |||| || || || || | Sbjct 69610216 AATGCAAGGCCCAGTCAGCCTTCT------CACAG-GCATTGTTTCAATAGCATTGAAAA 69610268 Query 13395 AATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTG 13454 ||| | | |||| || ||| ||| ||| | || || | | || ||||||| | Sbjct 69610269 GATATTCTCTTTCTTTGGGATCTTTAATGTAAATGTCAATAAGGAGACTGTACATTTTAG 69610328 Query 13455 AATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAA 13514 | || || ||||| | | ||| ||| |||| |||||||| |||||||| || |||| Sbjct 69610329 AGTGTATCCTTTCCCTGCCAGTTTAGAAGCCAT-AAAACATCCAGCCTCTGTAACTTGAA 69610387 Query 13515 CTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaa 13574 |||| | ||||| || | |||||| |||| | ||| || ||||| || ||||| | Sbjct 69610388 CTTCTTGGCTAAATCGCTCCACCAAGTTTGCGTTGAGTATGCCATCACTCGCTGCAAAGA 69610447 Query 13575 aaGCAAG--TATGTGCTTAATAAAttttttttCGTTTTCTGACAACTTTAACCAAT-CTG 13631 |||| || ||| ||| ||||| ||| | || | | | | ||| ||| | ||| Sbjct 69610448 AAGCCAGAACATGAGCT--ATAAAATTTCTGTCAT----TCAGAGCTT--CCCAGTGCTG 69610499 Query 13632 GAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTAT 13691 | || || || | || ||||||||| | |||||||| | || |||| ||||| | Sbjct 69610500 --ATCTCCTTGGAAAGGTCCACCTCCTCATCAGTCCAAAAGGTGGCCTCAGCTTTCTTGT 69610557 Query 13692 ACATCATCCATATATCCTTATAAACAATGGGAAACACAACG 13732 ||||| ||| ||||| | || |||||||| ||| || Sbjct 69610558 ACATCTGCCAGATATCATGGTACTAGATGGGAAAGACAGCG 69610598 >seq17 Length=136257712 Score = 226 bits (250), Expect = 2e-54 Identities = 605/910 (66%), Gaps = 45/910 (5%) Strand=Plus/Plus Query 12841 ATTTGACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTT 12900 ||| ||||| || ||| | ||||| |||| ||| || ||||| |||| |||||| Sbjct 93987390 ATTCGACATGACTCCCATCCTCTGATACTCGCCTACTTGCTTCTCAAAGAAGTCTGTTTT 93987449 Query 12901 TCCTTCTAACGAAATATTTTCCATAAAATCGAAAGGATTTT----TCGAACAATAGTATT 12956 |||||||| |||||||||||||| || || || ||||||| || | || | || Sbjct 93987450 TCCTTCTAGTGAAATATTTTCCATGAAGTCAAATGGATTTTCTACTCTGAAAA---TCTT 93987506 Query 12957 TTTTACACCCTAATTCTAGTAACAATCTGTCAG-CAACAAACTCTATGTACTGTTTCATT 13015 || |||||| | || ||| | ||||||| ||| ||| || |||||||| ||||| Sbjct 93987507 CTTAACACCC-AGCTCCAGTGGAAGCCTGTCAGCCAAAAAATTCAATGTACTGCTTCATC 93987565 Query 13016 AAATCACAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCT 13075 ||| || ||| || | | || ||||||| ||| || || | ||| | | || Sbjct 93987566 AAAGTGCAATTCGCCCCGAAGAGCTTCACAGGCAAAGCCTCCGTGAGAAACTCCTGCCCT 93987625 Query 13076 ATATCAACTG-CTTCGATAACTATGTCTCTTATTACGTTCTCTAATGGAGGATTTGATAG 13134 || ||| | || | ||| ||| ||| | | ||| ||||| | | || Sbjct 93987626 ATCCTAACAGTGTTGGTGTTTTATTTCTTTTACTGTTTGCTCCAATGGCTTGTGTACCAG 93987685 Query 13135 ATGCTTAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTC 13194 ||||| ||||||| || ||| | || ||||| || || || ||||| || || | ||| Sbjct 93987686 GTGCTTGAACATCAGCCAGGCAGAGTCCCAGTGTAAACCCTCGTCTCTGCTAATAAACTC 93987745 Query 13195 GTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAA 13254 || |||| ||| || ||| ||| || | || || || | ||| ||||| Sbjct 93987746 ATTGGAAAGTGTAAGGCCCAACATCAGTCTGCGATTCTTGAGCCAGAATAT--------- 93987796 Query 13255 CGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAAC-CTTTCACCATACG 13313 ||| | ||| || | |||||| || || ||||| || | |||| | ||| ||||| | Sbjct 93987797 CGA---TGCAAAGAAGACTCCTTCCACCGCAGCAAAGGCCA-CAACTCATTCTCCATATG 93987852 Query 13314 TACTATTTTTACTCTCTA-TCCACTTTCTGGCCCAGTTTG-CTTTTTGT--TTAACGCAG 13369 | | | || || | | |||| |||||||| | ||| || | || || || Sbjct 93987853 -AGGACTCTTTGTCCCCAGTCCAACGCAAGGCCCAGTCAGCCTTCTTCTTCTTCACACAA 93987911 Query 13370 TTCATATTTTCTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTA 13429 ||| ||| || || || || | ||| | | ||||||| ||| ||| ||| Sbjct 93987912 GGCATTGTTTAAATAGCATTGAAGAGATATTCTCTTTCCTTGGGATCTTTAAT----GTA 93987967 Query 13430 TCTATCAATAAG----CTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACC 13485 | |||||||| || |||||||| || || || |||||||| || ||||||| || Sbjct 93987968 CGTGTCAATAAGGGGACTGTACATTTCAGAGTGTATGTTTTCCATGGCAGTTTGGAAGCC 93988027 Query 13486 ATAAAAACATCTAGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTC 13545 ||| ||||| | ||||||| || |||||||| | ||||| || | |||||||| Sbjct 93988028 ATAGAAACAGCGGGCCTCTGTAACTTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTC 93988087 Query 13546 GTTAACTATCCCGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttC 13605 || ||||| || ||||| || ||||| ||||| || ||||| ||||| | | | || Sbjct 93988088 ATTGACTATGCCATCACTCGCTGCAAAGAAAGCCAGAATGTGAGCTATAAAATGTCTCTC 93988147 Query 13606 GT----TTTCTGACAACTTTAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAA 13661 | |||| | | ||| ||| | | ||| | | || || | || |||| || Sbjct 93988148 ATCCAGTTTC--AGAGCTT--CCCAGTGTTGAATACCCTTGGAAAGGTCCACCTTCTTGG 93988203 Query 13662 CGGTCCAAAAAGAAGCAACAGCCTTCTTATACATCATCCATATATCCTTATAAACAATGG 13721 | |||||||| || || |||| ||||| |||||| ||| ||||| | || |||||| Sbjct 93988204 CAGTCCAAAAGGAGGCCTCAGCTTTCTTGTACATCTGCCAGATATCATGGTATTCAATGG 93988263 Query 13722 GAAACACAAC 13731 |||| ||||| Sbjct 93988264 GAAAGACAAC 93988273 >seq7 Length=104786220 Score = 96.9 bits (106), Expect = 3e-15 Identities = 73/86 (85%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 12980 AATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAAT 13039 ||||||||||| |||||||| |||||||||||||| ||| ||||||||||||| || | Sbjct 35865500 AATCTGTCAGCTACAAACTCAATGTACTGTTTCATCAAAACACAGTTCATTCCAATGAGG 35865559 Query 13040 TTTACAGGCATAGCTTCTGTTAAAAA 13065 ||||||| |||||||||||||| Sbjct 35865560 CCAACAGGCAAGGCTTCTGTTAAAAA 35865585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430954014960408