Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26] 5,404 sequences; 2,625,587,472 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq18 275 4e-69 seq15 91.5 1e-13 >seq18 Length=130317789 Score = 275 bits (304), Expect = 4e-69 Identities = 410/579 (71%), Gaps = 2/579 (0%) Strand=Plus/Minus Query 25387 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCTACGTGATCCAGGT 25446 ||||||||| ||| || || | || |||||| | |||||||| |||| |||| ||||| Sbjct 85151568 TGGGAAAGG-TCTTGGTTCTCGCTGTAGCTGAATTTTCAGCGGCTCTATATGATTCAGGT 85151510 Query 25447 AGACGTGAGCGTCTCCCAGAGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTAACGTAAG 25506 | | || || ||||||| |||||||||||| || || || | || || || | | | Sbjct 85151509 AAATATGTGCATCTCCCAAAGTGTGGACAAAATCACCTGGCTGCAGACCTGTGATATGTG 85151450 Query 25507 CCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATGT 25566 | |||||||| ||||| ||| |||||||| ||||| || || || || | ||||| | Sbjct 85151449 CAATCATGTAGGTGAGCAGAGCATAGCTGGCAATGTTGAAAGGCACGCCCAGACCCATAT 85151390 Query 25567 CCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAAAACTGACAC 25626 | || ||||||||||| || || || || ||||| | | ||| || |||||||| Sbjct 85151389 -CTCCTGACCTCTGGTAAAGTTGGCAAGACAGCTCCCCATTCACCACATAGAACTGACAG 85151331 Query 25627 ATGGTGTAGCACGGAGGAAGAGCTATAAGGCCCAAGTCTTTAGGGTTCCAGGCGCACACG 25686 | || | ||| ||||| || || || ||| | ||||| ||||||||||| |||| | Sbjct 85151330 AGGGCATGGCAAGGAGGCAGTGCCATCAGGGGAAGATCTTTTGGGTTCCAGGCACACATG 85151271 Query 25687 ATGATGCACCTGTCTTCTGGGTTGTCCCTGATAAGATCCGCGGTGTTTTGCAGCTGATCC 25746 ||||| | ||||| || |||||| |||| || | ||||||||||| || Sbjct 85151270 ATGATTCTTCTGTCATCAGGGTTGGTTTTGATGGTGTCAATCATTTTTTGCAGCTGGTCT 85151211 Query 25747 ACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATACCTCCAC 25806 || || |||| ||| |||| ||| || ||||||||||||| |||| |||||| Sbjct 85151210 ACTCCTTGTCCCGGGTAATCTGAATCCATATCTTTGTACTCTGCTCCAAAATGCCTCCAT 85151151 Query 25807 TGGAACCCGTACACCGGTCCTAGGTCTCCATCTTCCCTGTGCTCAAAGCCCCTCTTATCC 25866 ||||| || || || || || ||||| || | | | | ||| ||| | ||| Sbjct 85151150 TGGAAACCATAAACTGGGCCCAGGTCCCCTTTCTGTCGGGCAGAAAATCCCAAGCTGTCC 85151091 Query 25867 AAAAAGTCTCTGGAACCATTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTG 25926 | |||||||| ||| |||||||| |||||||| | || ||||| ||| | ||||| Sbjct 85151090 AGAAAGTCTCGGGATCCATTGGCATCCCAGATTCTCACTCCCTTGGAGGACAATTCTTTA 85151031 Query 25927 GAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCGCC 25965 | |||||||| || ||| ||||||| || |||| || Sbjct 85151030 GCATTTGTGGATCCCTTGATAAACCACAACAACTCCTCC 85150992 >seq15 Length=152823684 Score = 91.5 bits (100), Expect = 1e-13 Identities = 121/168 (72%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 25773 CATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTC 25832 ||| || ||||||||||||| |||| |||||| ||||| || || || || || ||||| Sbjct 27105585 CATATCTTTGTACTCTGCTCCAAAATGCCTCCATTGGAAACCATAAACTGGGCCCAGGTC 27105644 Query 25833 TCCATCTTCCCTGTGCTCAAAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGTC 25892 || || | | | ||| ||| | |||| |||||||| ||| |||||||| || Sbjct 27105645 CCCTTCCTGTCGGGCAGAAAATCCCAAGCTGTCCAGAAAGTCTCGGGATCCATTGGCATC 27105704 Query 25893 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 25940 |||||| | || ||||| ||| | ||||| | |||||||| || Sbjct 27105705 CCAGATTCTCACTCCCTTGGAGGACAATTCTTTAGCATTTGTGGATCC 27105752 Score = 84.2 bits (92), Expect = 1e-11 Identities = 110/151 (73%), Gaps = 1/151 (1%) Strand=Plus/Plus Query 25506 GCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATG 25565 || |||||||| ||||| ||| |||||||| ||||| || || || || | ||||| Sbjct 27100120 GCAATCATGTAGGTGAGCAGAGCATAGCTGGCAATGTTGAAAGGCACGCCCAGACCCATA 27100179 Query 25566 TCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAAAACTGACA 25625 || || ||||||||||| ||||| || || ||||| | | ||| || |||||||| Sbjct 27100180 TCTCCT-GACCTCTGGTAAAGCTGGCAAGACAGCTCCCCATTCACCACATAGAACTGACA 27100238 Query 25626 CATGGTGTAGCACGGAGGAAGAGCTATAAGG 25656 | || | ||| ||||| || || || ||| Sbjct 27100239 GAGGGCATGGCAAGGAGGCAGTGCCATCAGG 27100269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340115198112492