Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26] 5,404 sequences; 2,625,587,472 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq17 86.0 5e-12 seq8 86.0 5e-12 >seq17 Length=136257712 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/232 (68%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || || | || ||||| | |||||| || |||||||||||||||||| |||| Sbjct 39746537 ACCACCCCGAAGTCTCAACACCAGATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGA 39746478 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 ||| || | || |||||||||||||| | | || | | ||||||||| || Sbjct 39746477 CAAAGTCCGGCCATCTTCCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGATCAGGAGG 39746418 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | |||||| ||| || || ||| | | |||| || || | | || Sbjct 39746417 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAAC 39746358 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTG 48730 ||| | || |||||||| || || || || |||||| | |||||||||||| Sbjct 39746357 CTCTAGCGTGATGGTTTTCCCCGTAAGGGTCTTCACAGAGATCTGCATCGTG 39746306 >seq8 Length=97876770 Score = 86.0 bits (94), Expect = 5e-12 Identities = 151/219 (69%), Gaps = 1/219 (0%) Strand=Plus/Minus Query 48512 CTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCG 48571 || ||||| | |||||| ||| |||||||||||||||||| ||| ||| | | || | Sbjct 13844525 CTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAAACAAGTATGGC-CA 13844467 Query 48572 TCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTG 48631 || |||||||||||||| | | | | | ||||||||| || | | |||||| Sbjct 13844466 TCTTCCAGCTGCTTACCAGCAAAGACCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTA 13844407 Query 48632 TCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATG 48691 ||| || || ||| | | ||||||| || | || ||||| || ||| Sbjct 13844406 TCCTGGATCTTGGCCTTTACATTTTCTATGGTGTCCAGGGGTTCAACCTCGAGCGTGATG 13844347 Query 48692 GTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTG 48730 || || || | || || |||||||||||||||||| || Sbjct 13844346 GTCTTCCCCATAAGGGTCTTCACAAAAATCTGCATCATG 13844308 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421223455869404