Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26] 5,404 sequences; 2,625,587,472 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq12 161 1e-34 seq1 150 3e-31 seq5075 102 1e-16 seq3806 91.5 2e-13 >seq12 Length=182815943 Score = 161 bits (178), Expect = 1e-34 Identities = 170/224 (76%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 8753 AACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTC 8812 || ||||| || || ||||| ||||||||||||||||| | ||||| |||||| ||| Sbjct 34697567 AAGCCCACATCACCACCGAACGTGCTGGGTTTCCAGTACTCTGGGGAACAGATGGGATTC 34697508 Query 8813 GCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATG 8872 | | |||||| ||||||||||| |||||||||| ||| | || || || || |||||| Sbjct 34697507 CCTAGGAGGCCCTTGAGGGAAAAGGGAGCCCCCATCTCTATCATACTTTCTCCAAAGATG 34697448 Query 8873 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCT 8932 | |||||| || ||| |||| || || || | ||| ||||| | ||| |||||||| Sbjct 34697447 GAGTTGGGCTGGCACTTCTCCAGCAGCAACCCCGGGTAGAACTCTAAAGCATCGATGTCA 34697388 Query 8933 CCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTGT 8976 ||||| || || | || ||||| || ||||| |||||||| Sbjct 34697387 CCGTACAGCTCCTCCAACTCAGCAGCCATCTCCTTCTCTCCTGT 34697344 >seq1 Length=198846266 Score = 150 bits (166), Expect = 3e-31 Identities = 205/286 (72%), Gaps = 0/286 (0%) Strand=Plus/Minus Query 8690 AACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCACTCTTGACGATC 8749 || |||||||| || || || | |||| |||||||| || | ||| | |||| |||| Sbjct 151554389 AAGGGACACCCCTTCACATTATTGCAGATGAGAGACTGAATTGAGGCAGTATTGATGATC 151554330 Query 8750 CCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACG 8809 ||| ||||| || || || |||||||| || |||||||| || || |||||| Sbjct 151554329 TTAAAACCCACTTCGCCTCCAAAGGTGCTCGGCTTCCAGTATTGAGGAGAACAGATGGGA 151554270 Query 8810 TTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAG 8869 || |||| || ||||| | ||| || || || || || || | ||| |||| || ||| Sbjct 151554269 TTTCCCATAAGTCCTTTCAAGGAGAATGGTGCTCCAAGTTCTACCATGGTCTCCCCAAAG 151554210 Query 8870 ATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATG 8929 || || | ||||| || |||||||||| | | | ||||| |||| | |||||| Sbjct 151554209 ATAGCATCTGGACGAGGTTTTTCCACCAGCAGGGCAGGGTACAGTTCCATGACATCGATG 151554150 Query 8930 TCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTG 8975 || | ||| ||||| | | || ||||| |||||||||||||||| Sbjct 151554149 TCACTGTAGAGGGCTTTCAACTCTGCAGCCATTTCCTTTTCTCCTG 151554104 Score = 143 bits (158), Expect = 4e-29 Identities = 178/244 (73%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 9622 ATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGA 9681 ||||||| |||| || || ||||| || || | ||| || ||||| || | || || Sbjct 151552849 ATGAGTCTGCTGGTTTGGAATAGTTGCTCATCCCCCCACTCAGGATGCTCCTGCTTGAGT 151552790 Query 9682 ACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGC 9741 | ||||||||||||||||| |||| |||||||| || || |||||||| ||||||||| Sbjct 151552789 ATGTCGCACACTCTGTTGTGCTCCCGAAGCCAGATGGTGGCATACATCATCAGACCAGGC 151552730 Query 9742 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGA 9801 ||||| ||||| | || || || ||||| | || || || || | | ||||| Sbjct 151552729 ACCAGACCAAAGACTTCCTGCCCCACAGCAAACTTCAGGTTCTCAGGGATGTGAGGAGGG 151552670 Query 9802 TAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATC 9861 |||||||| | ||||| |||||||| | ||||||||||| || || |||| | | Sbjct 151552669 TAGATCATCTCTACCTGAGTGTCTTTGACTGTGGGGGGATACACCTCTCCACCAATGACC 151552610 Query 9862 TGAT 9865 | || Sbjct 151552609 TAAT 151552606 Score = 109 bits (120), Expect = 8e-19 Identities = 168/237 (71%), Gaps = 2/237 (1%) Strand=Plus/Plus Query 9622 ATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGA 9681 ||||||| |||| || || ||| | || || ||| || ||||| || |||| || Sbjct 151780090 ATGAGTCTGCTGGTTTGGAATAGTCGCTCATCCTCCCACTCAGGATGCTCCTGTTTGAGT 151780149 Query 9682 ACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGC 9741 | | |||||||||||||| |||| |||||| | || || |||||||| ||||||||| Sbjct 151780150 ATGCCACACACTCTGTTGTGCTCCCAAAGCCAGGTGGTGGCATACATCATCAGACCAGGC 151780209 Query 9742 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCG-GGAGG 9800 ||||| ||||| | || || ||||| | | | || || || | |||| ||||| Sbjct 151780210 ACCAGACCAAAGACTTCCCATCCCACAGCAAACTGTAGGTTCTCAGGGA-TTCGAGGAGG 151780268 Query 9801 ATAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAAT 9857 |||||||| | ||||| ||||||||| || ||||||| || || |||| Sbjct 151780269 GTAGATCATCTCTACCTGAGTATCTTTGACTATGGTAGGATACACCTCTCCACCAAT 151780325 Score = 100 bits (110), Expect = 4e-16 Identities = 156/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 9622 ATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGA 9681 ||||||| |||| || || ||| | || || ||| ||||| || |||| || Sbjct 151542874 ATGAGTCTCCTGGTTTGGAATAGTGGCTCATCCTCCCACATAGGATGCTCCTGTTTGAGT 151542815 Query 9682 ACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGC 9741 | || |||||||||||||| |||| ||||| || ||||| ||||| || ||||||||| Sbjct 151542814 ATGTCACACACTCTGTTGTGCTCCCAAAGCCAAATTGTAGCATACATTATCAGACCAGGC 151542755 Query 9742 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGA 9801 ||||| ||||| | || || || ||||| | ||| || | || | | ||||| Sbjct 151542754 ACCAGACCAAAGACTTCATGCCCCACAGCAAACTGCAGGTTATAAGGGATCTGAGGAGGG 151542695 Query 9802 TAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACA 9844 | ||||| | ||||| |||||||| | ||| |||| || Sbjct 151542694 TCTATCATCTCTACCTGAGTGTCTTTGACTGTGGGAGGATTCA 151542652 Score = 96.9 bits (106), Expect = 5e-15 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 10287 TCACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 10346 ||||| || || || | |||||||| || || | | || ||||| || ||| | | Sbjct 151550786 TCACCCTTCACACCCATGGGAGTTGGGCAGTCATCTGCTACGGGAGGAAGGGCCCTGGTG 151550727 Query 10347 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATG 10406 || |||||||| |||||||| |||||||||||| ||| | |||| | | ||||| | Sbjct 151550726 TAGTAGGAGAGGTTGGAGAAGGCTTCCCAGCTTTTGTAACCATAGTGCACATTGTAAGTA 151550667 Query 10407 GGAGGGCTGTCAATCAAATCGGATCTACCTGAA 10439 || || ||||||||||||| ||||| ||||| Sbjct 151550666 GGTGGACTGTCAATCAAATATGATCTGGCTGAA 151550634 Score = 84.2 bits (92), Expect = 3e-11 Identities = 191/286 (67%), Gaps = 1/286 (0%) Strand=Plus/Plus Query 8690 AACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCACTCTTGACGATC 8749 || |||||||||| || | | ||| ||||| || || | ||| | |||| |||| Sbjct 151833802 AAGGGACACCCTTC-ACACTTTTGTAGATGAGAGAATGAATTGAGGCAGTGTTGATGATC 151833860 Query 8750 CCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACG 8809 ||| ||||| | ||| || |||||||| |||||||||| || || |||||| Sbjct 151833861 TTAAAACCCACTTTTCCTCCAAAGGTGCTCAGTTTCCAGTATTGAGGAGAACAGATGGGA 151833920 Query 8810 TTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAG 8869 || |||| |||||| ||| ||| || | || | || | ||| |||| | ||| Sbjct 151833921 TTAACCATAAGGCCTCTGAAGGAGAATTGTAATCCAGGTTCTACCATGGTCTCCCTAAAG 151833980 Query 8870 ATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATG 8929 || || | ||| | |||||||||| || | || |||| |||| | | | | Sbjct 151833981 ATAGCATCTGGATGAGGCTTTTCCAGCACCAGGTTGGGATACAGTTCCATGACATGAAAG 151834040 Query 8930 TCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTG 8975 || | | | || || | | || ||||| |||||||||||||||| Sbjct 151834041 TCACTGGAGAGAGCTTTCAACTCTGCAGCCATTTCCTTTTCTCCTG 151834086 >seq5075 Length=14012 Score = 102 bits (112), Expect = 1e-16 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 9657 CCATTCTGGATGTTCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGAT 9716 ||| || ||||| || |||| || | || |||||||||||||| |||| |||||||| Sbjct 13867 CCACTCAGGATGCTCCTGTTTGAGTATGTCACACACTCTGTTGTGCTCCCAAAGCCAGAT 13808 Query 9717 AGTAGCGTACATCATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACG 9776 || | ||||||| |||||||||||||| ||||| | || || | |||||| | | Sbjct 13807 GGTTGTATACATCAGCAGACCAGGCACCAGACCAAAGACTTCCTGCCAGACAGCAAACTG 13748 Query 9777 CATATTTTCGGGCACTTCGGGAGGATAGATCATGTGCACCTGGACATCTTTGACCGAGGG 9836 || || || || | | ||| |||| ||| | ||||| |||||||| | || Sbjct 13747 CAGGTTCTCAGGGATGTGAAAAGGGTAGACCATCTCTACCTGAGTGTCTTTGACTGTAGG 13688 Query 9837 GGGATACATTTCACCGTCAATAATCT 9862 ||||||| || || |||| |||| Sbjct 13687 AGGATACACCTCTCCACCAATGATCT 13662 Score = 91.5 bits (100), Expect = 2e-13 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 10287 TCACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 10346 ||||| || || || | |||||||| || | | | || ||||| || ||||| | | Sbjct 11803 TCACCCTTCACACCCATGGGAGTTGGGCAGGCTTCTGCTACTGGAGGAAGGATCCTGGTG 11744 Query 10347 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATG 10406 || |||||||| |||||||| |||||||||||| ||| | ||| | | ||||| | Sbjct 11743 TAGTAGGAGAGGTTGGAGAAGGCTTCCCAGCTTTTGTAACCACAGTGCACATTGTAAGTT 11684 Query 10407 GGAGGGCTGTCAATCAAATCGGATCTACCTGAA 10439 || | ||||||||||||| ||||| ||||| Sbjct 11683 GGTGCACTGTCAATCAAATGTGATCTGGCTGAA 11651 >seq3806 Length=21093 Score = 91.5 bits (100), Expect = 2e-13 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 10287 TCACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 10346 ||||| || || || | |||||||| || | | | || ||||| || ||||| | | Sbjct 766 TCACCCTTCACACCCATGGGAGTTGGGCAGGCTTCTGCTACTGGAGGAAGGATCCTGGTG 707 Query 10347 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATG 10406 || |||||||| |||||||| |||||||||||| ||| | ||| | | ||||| | Sbjct 706 TAGTAGGAGAGGTTGGAGAAGGCTTCCCAGCTTTTGTAACCACAGTGCACATTGTAAGTT 647 Query 10407 GGAGGGCTGTCAATCAAATCGGATCTACCTGAA 10439 || | ||||||||||||| ||||| ||||| Sbjct 646 GGTGCACTGTCAATCAAATGTGATCTGGCTGAA 614 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708476939149760